Wall clock time and date at job start Wed Apr 1 2020 04:09:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46897 * 111.00129 * 2 1 4 4 C 1.50701 * 109.47242 * 293.94929 * 3 2 1 5 5 H 1.08000 * 119.99525 * 359.97438 * 4 3 2 6 6 C 1.37873 * 120.00095 * 180.02562 * 4 3 2 7 7 N 1.31510 * 120.00022 * 0.02562 * 6 4 3 8 8 Si 1.86804 * 119.99723 * 179.97438 * 6 4 3 9 9 H 1.48500 * 109.46837 * 90.00424 * 8 6 4 10 10 H 1.48500 * 109.46976 * 209.99844 * 8 6 4 11 11 H 1.48494 * 109.47369 * 330.00150 * 8 6 4 12 12 C 1.39675 * 110.99867 * 123.95366 * 2 1 3 13 13 C 1.38933 * 120.07099 * 296.04802 * 12 2 1 14 14 C 1.38090 * 119.92528 * 179.97438 * 13 12 2 15 15 C 1.38305 * 120.06979 * 359.97438 * 14 13 12 16 16 S 1.76208 * 119.92159 * 180.02562 * 15 14 13 17 17 C 1.81401 * 104.45128 * 89.99548 * 16 15 14 18 18 O 1.42099 * 104.27518 * 206.07052 * 16 15 14 19 19 O 1.42101 * 104.27616 * 333.92209 * 16 15 14 20 20 C 1.38260 * 120.15666 * 359.97438 * 15 14 13 21 21 C 1.38133 * 120.07050 * 359.78783 * 20 15 14 22 22 S 1.76197 * 120.03515 * 180.23524 * 21 20 15 23 23 C 1.81402 * 104.44920 * 115.23397 * 22 21 20 24 24 O 1.42102 * 104.27603 * 231.30509 * 22 21 20 25 25 O 1.42096 * 104.27981 * 359.16107 * 22 21 20 26 26 H 1.08995 * 109.47128 * 296.04882 * 1 2 3 27 27 H 1.08999 * 109.46465 * 56.05013 * 1 2 3 28 28 H 1.09000 * 109.47230 * 176.04541 * 1 2 3 29 29 H 1.09000 * 109.47347 * 53.95193 * 3 2 1 30 30 H 1.09009 * 109.46998 * 173.95338 * 3 2 1 31 31 H 0.97005 * 119.99605 * 179.97438 * 7 6 4 32 32 H 1.07994 * 120.04089 * 359.97438 * 13 12 2 33 33 H 1.08003 * 119.96359 * 180.02562 * 14 13 12 34 34 H 1.09004 * 109.46535 * 60.00269 * 17 16 15 35 35 H 1.09002 * 109.46978 * 179.97438 * 17 16 15 36 36 H 1.08999 * 109.46828 * 300.00184 * 17 16 15 37 37 H 1.07999 * 119.96951 * 180.02562 * 20 15 14 38 38 H 1.09005 * 109.46900 * 59.99975 * 23 22 21 39 39 H 1.09001 * 109.47216 * 179.97438 * 23 22 21 40 40 H 1.08990 * 109.47089 * 299.99530 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6371 2.0471 -1.2985 5 1 1.0748 1.5111 -2.0488 6 6 2.0279 3.3490 -1.5289 7 7 2.7138 4.0011 -0.6158 8 14 1.5842 4.1863 -3.1388 9 1 0.2721 4.8673 -2.9974 10 1 2.6269 5.1869 -3.4801 11 1 1.5007 3.1703 -4.2186 12 6 1.9695 -0.7283 1.0816 13 6 1.7261 -0.3010 2.3810 14 6 2.2219 -1.0236 3.4482 15 6 2.9597 -2.1719 3.2245 16 16 3.5899 -3.0914 4.5892 17 6 2.2776 -4.2820 4.9776 18 8 4.7298 -3.7588 4.0654 19 8 3.7167 -2.1319 5.6296 20 6 3.2029 -2.6006 1.9328 21 6 2.7057 -1.8851 0.8609 22 16 3.0110 -2.4358 -0.7848 23 6 1.3700 -2.8577 -1.4327 24 8 3.5292 -1.2903 -1.4471 25 8 3.7991 -3.6069 -0.6220 26 1 -0.3633 0.4513 0.9232 27 1 -0.3632 0.5739 -0.8525 28 1 -0.3634 -1.0252 -0.0709 29 1 1.5611 1.9274 0.8309 30 1 3.0798 1.3443 0.1083 31 1 2.9891 4.9170 -0.7782 32 1 1.1497 0.5954 2.5563 33 1 2.0327 -0.6922 4.4585 34 1 2.0937 -4.9158 4.1100 35 1 2.5861 -4.9007 5.8203 36 1 1.3647 -3.7451 5.2355 37 1 3.7790 -3.4979 1.7617 38 1 0.7325 -1.9738 -1.4110 39 1 1.4647 -3.2119 -2.4592 40 1 0.9268 -3.6406 -0.8174 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362408944.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:09:06 Heat of formation + Delta-G solvation = -85.401060 kcal Electronic energy + Delta-G solvation = -27164.029101 eV Core-core repulsion = 23199.883841 eV Total energy + Delta-G solvation = -3964.145260 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.074 amu Computer time = 1.63 seconds Orbital eigenvalues (eV) -39.88338 -37.25133 -36.96979 -36.27012 -36.03229 -35.49694 -32.73589 -31.44502 -30.29424 -29.68727 -29.35702 -27.43199 -25.56180 -23.49444 -22.97831 -20.79347 -19.73610 -18.57147 -17.98304 -16.79079 -16.50594 -16.37940 -16.05681 -15.82893 -15.77080 -15.53503 -14.89985 -14.78233 -14.20960 -13.96759 -13.80691 -13.59991 -13.48545 -13.18742 -13.06595 -12.75789 -12.68986 -12.31039 -12.21932 -12.11112 -12.00361 -11.69081 -11.62991 -11.53145 -11.33171 -11.12478 -11.03885 -10.85383 -10.72592 -10.70099 -10.40185 -10.12732 -9.47717 -9.46399 -9.03369 -8.55615 -7.96968 -6.10951 -4.12797 -0.13361 0.36218 0.67894 0.98110 2.67838 3.05363 3.19496 3.27561 3.35385 3.39301 3.75218 3.91734 4.11156 4.17652 4.44016 4.46750 4.50027 4.62549 4.80576 4.83150 4.95511 5.10746 5.25800 5.31008 5.37665 5.44798 5.55286 5.66390 5.75586 5.77539 5.86286 5.91721 6.17707 6.34081 6.57576 6.92357 7.03645 7.54828 7.69927 7.94356 8.27138 8.90220 9.50616 11.00255 Molecular weight = 347.07amu Principal moments of inertia in cm(-1) A = 0.014514 B = 0.003857 C = 0.003375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1928.666734 B = 7257.510715 C = 8295.239027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.532 5.532 3 C 0.203 3.797 4 C -0.507 4.507 5 H 0.068 0.932 6 C 0.058 3.942 7 N -0.896 5.896 8 Si 0.901 3.099 9 H -0.282 1.282 10 H -0.286 1.286 11 H -0.271 1.271 12 C 0.263 3.737 13 C -0.188 4.188 14 C 0.031 3.969 15 C -0.699 4.699 16 S 2.503 3.497 17 C -0.652 4.652 18 O -0.934 6.934 19 O -0.938 6.938 20 C 0.074 3.926 21 C -0.669 4.669 22 S 2.505 3.495 23 C -0.649 4.649 24 O -0.894 6.894 25 O -0.957 6.957 26 H 0.030 0.970 27 H 0.095 0.905 28 H 0.053 0.947 29 H 0.003 0.997 30 H 0.042 0.958 31 H 0.263 0.737 32 H 0.141 0.859 33 H 0.144 0.856 34 H 0.133 0.867 35 H 0.131 0.869 36 H 0.131 0.869 37 H 0.161 0.839 38 H 0.144 0.856 39 H 0.128 0.872 40 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.246 -17.311 8.349 20.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.255 5.255 3 C 0.081 3.919 4 C -0.545 4.545 5 H 0.086 0.914 6 C -0.144 4.144 7 N -0.535 5.535 8 Si 0.729 3.271 9 H -0.208 1.208 10 H -0.212 1.212 11 H -0.196 1.196 12 C 0.167 3.833 13 C -0.210 4.210 14 C 0.011 3.989 15 C -0.786 4.786 16 S 2.682 3.318 17 C -0.801 4.801 18 O -0.931 6.931 19 O -0.935 6.935 20 C 0.054 3.946 21 C -0.756 4.756 22 S 2.682 3.318 23 C -0.799 4.799 24 O -0.891 6.891 25 O -0.954 6.954 26 H 0.049 0.951 27 H 0.114 0.886 28 H 0.072 0.928 29 H 0.021 0.979 30 H 0.060 0.940 31 H 0.073 0.927 32 H 0.159 0.841 33 H 0.162 0.838 34 H 0.152 0.848 35 H 0.149 0.851 36 H 0.150 0.850 37 H 0.179 0.821 38 H 0.162 0.838 39 H 0.146 0.854 40 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -5.437 -17.253 7.928 19.751 hybrid contribution -1.943 1.225 0.005 2.297 sum -7.379 -16.028 7.933 19.347 Atomic orbital electron populations 1.22492 0.85826 1.00692 1.02856 1.60334 1.08384 1.20761 1.36031 1.19904 0.96320 0.77837 0.97807 1.20981 1.35512 0.96748 1.01296 0.91424 1.24956 0.95038 0.97305 0.97093 1.69948 1.37735 1.11611 1.34188 0.86442 0.77868 0.79235 0.83557 1.20796 1.21153 1.19580 1.19096 0.85295 0.88166 0.90738 1.22062 1.03899 1.01818 0.93215 1.21031 0.87853 0.89984 1.00036 1.30499 1.19595 1.13505 1.15037 1.05084 0.76342 0.75874 0.74456 1.30249 1.19774 1.17726 1.12384 1.93605 1.44583 1.75943 1.78994 1.93585 1.85516 1.58798 1.55622 1.20703 0.87996 0.96138 0.89808 1.30746 1.14460 1.06917 1.23466 1.05163 0.77250 0.74729 0.74696 1.30250 1.24562 1.12714 1.12382 1.93706 1.75210 1.48025 1.72208 1.93538 1.65563 1.50434 1.85872 0.95119 0.88615 0.92825 0.97916 0.94011 0.92710 0.84139 0.83820 0.84841 0.85072 0.85001 0.82142 0.83760 0.85389 0.86030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 8.40 60.06 0.50 0.93 16 2 N -0.53 -10.20 2.74 -180.33 -0.49 -10.69 16 3 C 0.20 5.00 4.30 -4.98 -0.02 4.98 16 4 C -0.51 -13.52 8.46 -34.44 -0.29 -13.81 16 5 H 0.07 1.73 7.12 -52.49 -0.37 1.36 16 6 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 7 N -0.90 -26.11 13.29 55.43 0.74 -25.37 16 8 Si 0.90 21.14 29.54 -169.99 -5.02 16.12 16 9 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 10 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 12 C 0.26 4.55 4.62 -83.79 -0.39 4.16 16 13 C -0.19 -2.91 8.66 -39.38 -0.34 -3.25 16 14 C 0.03 0.40 9.46 -39.61 -0.37 0.03 16 15 C -0.70 -8.91 5.66 -39.55 -0.22 -9.14 16 16 S 2.50 25.61 5.80 -107.50 -0.62 24.98 16 17 C -0.65 -3.27 10.80 101.05 1.09 -2.18 16 18 O -0.93 -12.76 17.12 -57.54 -0.99 -13.75 16 19 O -0.94 -12.29 17.12 -57.54 -0.99 -13.28 16 20 C 0.07 1.06 8.92 -39.61 -0.35 0.70 16 21 C -0.67 -10.75 5.60 -39.38 -0.22 -10.97 16 22 S 2.50 39.31 5.36 -107.50 -0.58 38.74 16 23 C -0.65 -6.97 10.71 101.05 1.08 -5.88 16 24 O -0.89 -18.69 17.14 -57.54 -0.99 -19.68 16 25 O -0.96 -15.89 16.74 -57.54 -0.96 -16.85 16 26 H 0.03 0.45 7.34 -51.93 -0.38 0.07 16 27 H 0.10 1.58 6.76 -51.93 -0.35 1.22 16 28 H 0.05 0.63 7.00 -51.93 -0.36 0.26 16 29 H 0.00 0.08 7.48 -51.93 -0.39 -0.31 16 30 H 0.04 1.18 8.06 -51.92 -0.42 0.76 16 31 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 32 H 0.14 2.10 7.14 -52.49 -0.37 1.72 16 33 H 0.14 1.48 7.57 -52.48 -0.40 1.09 16 34 H 0.13 0.48 8.14 -51.92 -0.42 0.06 16 35 H 0.13 0.44 8.14 -51.92 -0.42 0.02 16 36 H 0.13 0.45 8.14 -51.92 -0.42 0.03 16 37 H 0.16 2.07 6.72 -52.49 -0.35 1.71 16 38 H 0.14 1.65 5.37 -51.92 -0.28 1.37 16 39 H 0.13 1.12 8.14 -51.92 -0.42 0.69 16 40 H 0.12 0.92 8.14 -51.93 -0.42 0.49 16 LS Contribution 356.76 15.07 5.38 5.38 Total: -1.00 -39.00 356.76 -9.08 -48.08 By element: Atomic # 1 Polarization: 4.19 SS G_CDS: -4.93 Total: -0.74 kcal Atomic # 6 Polarization: -33.31 SS G_CDS: 0.37 Total: -32.94 kcal Atomic # 7 Polarization: -36.31 SS G_CDS: 0.24 Total: -36.06 kcal Atomic # 8 Polarization: -59.64 SS G_CDS: -3.92 Total: -63.56 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Atomic # 16 Polarization: 64.92 SS G_CDS: -1.20 Total: 63.72 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -39.00 -9.08 -48.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362408944.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.324 kcal (2) G-P(sol) polarization free energy of solvation -38.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds