Wall clock time and date at job start Wed Apr 1 2020 04:47:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42895 * 114.00206 * 2 1 4 4 C 1.52998 * 109.47593 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47119 * 65.00020 * 4 3 2 6 6 C 1.36940 * 120.00295 * 275.00619 * 5 4 3 7 7 H 1.07996 * 120.00453 * 141.87726 * 6 5 4 8 8 C 1.38817 * 119.99538 * 321.87503 * 6 5 4 9 9 N 1.31618 * 119.99632 * 158.45116 * 8 6 5 10 10 Si 1.86796 * 120.00213 * 338.45140 * 8 6 5 11 11 H 1.48503 * 109.47360 * 95.49671 * 10 8 6 12 12 H 1.48504 * 109.46941 * 215.49812 * 10 8 6 13 13 H 1.48504 * 109.47101 * 335.49720 * 10 8 6 14 14 S 1.65601 * 119.99762 * 95.00178 * 5 4 3 15 15 O 1.42101 * 106.40016 * 162.25325 * 14 5 4 16 16 O 1.42096 * 106.40139 * 29.33532 * 14 5 4 17 17 C 1.76201 * 107.22006 * 275.79339 * 14 5 4 18 18 C 1.40305 * 126.43522 * 112.96915 * 17 14 5 19 19 C 1.36634 * 106.70441 * 179.73537 * 18 17 14 20 20 C 1.46473 * 125.99640 * 180.02562 * 19 18 17 21 21 O 1.21619 * 120.00162 * 0.02562 * 20 19 18 22 22 O 1.34904 * 119.99727 * 180.02562 * 20 19 18 23 23 C 1.45203 * 116.99704 * 180.02562 * 22 20 19 24 24 O 1.34936 * 108.00675 * 0.02562 * 19 18 17 25 25 C 1.33915 * 109.38067 * 359.97438 * 24 19 18 26 26 C 1.50696 * 125.60750 * 179.97438 * 25 24 19 27 27 H 1.08996 * 109.47029 * 59.99227 * 1 2 3 28 28 H 1.08998 * 109.46731 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46955 * 299.99631 * 1 2 3 30 30 H 1.09009 * 109.47160 * 60.00418 * 3 2 1 31 31 H 1.09001 * 109.47758 * 300.00626 * 3 2 1 32 32 H 1.09005 * 109.46901 * 305.00558 * 4 3 2 33 33 H 1.08995 * 109.47543 * 185.00687 * 4 3 2 34 34 H 0.97005 * 119.99901 * 179.97438 * 9 8 6 35 35 H 1.07998 * 126.64815 * 359.72442 * 18 17 14 36 36 H 1.09001 * 109.46797 * 60.00065 * 23 22 20 37 37 H 1.08998 * 109.46358 * 179.97438 * 23 22 20 38 38 H 1.08990 * 109.46869 * 299.99640 * 23 22 20 39 39 H 1.09005 * 109.47351 * 271.52216 * 26 25 24 40 40 H 1.09001 * 109.47639 * 31.52292 * 26 25 24 41 41 H 1.08997 * 109.47115 * 151.52183 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9757 0.5644 -1.2527 6 6 3.9988 -0.7997 -1.3701 7 1 3.7126 -1.2666 -2.3009 8 6 4.3901 -1.5825 -0.2925 9 7 4.0265 -2.8459 -0.2306 10 14 5.4327 -0.8427 1.0695 11 1 4.5531 -0.3982 2.1803 12 1 6.3873 -1.8633 1.5720 13 1 6.1866 0.3215 0.5389 14 16 4.4454 1.5131 -2.5262 15 8 5.1882 0.6735 -3.3995 16 8 4.9700 2.7081 -1.9643 17 6 2.9861 1.9730 -3.4001 18 6 2.4491 3.2651 -3.5036 19 6 1.3247 3.1626 -4.2730 20 6 0.4356 4.2643 -4.6492 21 8 0.6737 5.3947 -4.2691 22 8 -0.6473 4.0248 -5.4172 23 6 -1.4833 5.1640 -5.7514 24 8 1.1770 1.8686 -4.6255 25 6 2.1768 1.1483 -4.1013 26 6 2.3676 -0.3375 -4.2655 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.6887 1.8463 0.8901 31 1 1.6886 1.8465 -0.8899 32 1 3.8515 0.5681 0.8409 33 1 3.9786 2.1764 0.0890 34 1 4.3003 -3.3930 0.5223 35 1 2.8473 4.1660 -3.0607 36 1 -0.8933 5.8997 -6.2981 37 1 -2.3165 4.8336 -6.3715 38 1 -1.8672 5.6139 -4.8359 39 1 1.8293 -0.8624 -3.4762 40 1 1.9824 -0.6483 -5.2366 41 1 3.4292 -0.5767 -4.2023 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000414449277.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:47:57 Heat of formation + Delta-G solvation = -181.580065 kcal Electronic energy + Delta-G solvation = -30492.117659 eV Core-core repulsion = 26081.048893 eV Total energy + Delta-G solvation = -4411.068766 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.101 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -44.15327 -41.43475 -39.04456 -38.14893 -37.79814 -37.09550 -36.72223 -34.83368 -33.73809 -33.43871 -30.60929 -29.74780 -27.89371 -27.16622 -25.92398 -24.46971 -23.84275 -23.38838 -22.19276 -20.41518 -19.84687 -18.86329 -18.50946 -18.27821 -18.10639 -17.56384 -17.14453 -17.00421 -16.87413 -16.72671 -16.27577 -16.03188 -15.71585 -15.01346 -14.78761 -14.60052 -14.48003 -14.46687 -14.32554 -13.91553 -13.80966 -13.66242 -13.34814 -13.16964 -13.10754 -13.05239 -12.88993 -12.69236 -12.39944 -12.35321 -12.23796 -12.15787 -11.97823 -11.81608 -11.75147 -11.62864 -10.73677 -10.36138 -10.08594 -9.89314 -8.23771 -5.82940 -0.51137 -0.44855 0.38164 0.94282 1.31437 1.45127 1.48749 1.50937 1.70647 2.28290 2.41798 2.80748 3.06045 3.16614 3.19112 3.25703 3.72419 3.76077 4.08858 4.17089 4.21503 4.23750 4.29120 4.29608 4.40464 4.44977 4.48156 4.55527 4.60534 4.64565 4.65935 4.79561 4.88672 4.93498 4.96545 5.07492 5.27801 5.33600 5.87312 6.33658 6.38184 6.53995 7.25372 7.33111 8.89215 Molecular weight = 347.10amu Principal moments of inertia in cm(-1) A = 0.015495 B = 0.004356 C = 0.004076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1806.548460 B = 6427.050761 C = 6867.235373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.380 6.380 3 C 0.050 3.950 4 C 0.096 3.904 5 N -0.867 5.867 6 C -0.282 4.282 7 H 0.102 0.898 8 C 0.045 3.955 9 N -0.895 5.895 10 Si 0.895 3.105 11 H -0.259 1.259 12 H -0.296 1.296 13 H -0.266 1.266 14 S 2.684 3.316 15 O -0.980 6.980 16 O -1.004 7.004 17 C -0.783 4.783 18 C -0.022 4.022 19 C -0.092 4.092 20 C 0.564 3.436 21 O -0.503 6.503 22 O -0.353 6.353 23 C 0.027 3.973 24 O -0.142 6.142 25 C 0.196 3.804 26 C -0.119 4.119 27 H 0.039 0.961 28 H 0.084 0.916 29 H 0.049 0.951 30 H 0.074 0.926 31 H 0.048 0.952 32 H 0.066 0.934 33 H 0.106 0.894 34 H 0.270 0.730 35 H 0.185 0.815 36 H 0.071 0.929 37 H 0.138 0.862 38 H 0.071 0.929 39 H 0.120 0.880 40 H 0.127 0.873 41 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.447 10.420 -6.297 17.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.298 6.298 3 C -0.028 4.028 4 C -0.030 4.030 5 N -0.700 5.700 6 C -0.416 4.416 7 H 0.119 0.881 8 C -0.160 4.160 9 N -0.535 5.535 10 Si 0.723 3.277 11 H -0.185 1.185 12 H -0.224 1.224 13 H -0.191 1.191 14 S 2.780 3.220 15 O -0.970 6.970 16 O -0.994 6.994 17 C -0.870 4.870 18 C -0.042 4.042 19 C -0.141 4.141 20 C 0.409 3.591 21 O -0.394 6.394 22 O -0.269 6.269 23 C -0.065 4.065 24 O -0.035 6.035 25 C 0.138 3.862 26 C -0.174 4.174 27 H 0.057 0.943 28 H 0.103 0.897 29 H 0.068 0.932 30 H 0.092 0.908 31 H 0.066 0.934 32 H 0.084 0.916 33 H 0.124 0.876 34 H 0.080 0.920 35 H 0.203 0.797 36 H 0.090 0.910 37 H 0.156 0.844 38 H 0.090 0.910 39 H 0.138 0.862 40 H 0.145 0.855 41 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -11.732 10.714 -6.613 17.209 hybrid contribution -0.126 0.552 0.800 0.980 sum -11.858 11.265 -5.813 17.358 Atomic orbital electron populations 1.22819 0.81369 1.02852 0.99948 1.88248 1.19542 1.26831 1.95214 1.22992 0.93535 0.85644 1.00664 1.21871 0.94069 0.98785 0.88236 1.52859 1.78157 1.14540 1.24440 1.18574 1.42710 0.78004 1.02296 0.88108 1.25589 0.96255 0.94931 0.99259 1.69866 1.43376 1.08183 1.32100 0.86629 0.80418 0.78799 0.81823 1.18477 1.22354 1.19101 1.02601 0.73154 0.72203 0.74035 1.93450 1.68571 1.67674 1.67275 1.93418 1.77591 1.50140 1.78202 1.31896 1.28099 1.01697 1.25309 1.21689 0.91378 0.97079 0.94022 1.20809 1.01048 0.82211 1.10009 1.18887 0.79326 0.85054 0.75785 1.90945 1.73016 1.21780 1.53611 1.86661 1.35540 1.41914 1.62774 1.23767 0.93736 0.86628 1.02400 1.84103 1.43021 1.17742 1.58667 1.23173 0.81991 0.95273 0.85752 1.21346 1.06667 0.82069 1.07363 0.94278 0.89746 0.93243 0.90783 0.93413 0.91582 0.87597 0.91992 0.79745 0.91036 0.84389 0.91017 0.86209 0.85488 0.87463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.75 11.01 113.37 1.25 2.00 16 2 O -0.38 -14.38 9.94 -148.98 -1.48 -15.86 16 3 C 0.05 1.69 6.28 71.98 0.45 2.14 16 4 C 0.10 3.78 5.09 86.38 0.44 4.22 16 5 N -0.87 -38.01 2.46 -343.45 -0.84 -38.85 16 6 C -0.28 -13.89 8.53 84.03 0.72 -13.17 16 7 H 0.10 5.04 5.80 -2.91 -0.02 5.02 16 8 C 0.05 2.36 5.33 84.86 0.45 2.81 16 9 N -0.90 -49.03 13.97 21.65 0.30 -48.73 16 10 Si 0.90 41.59 25.00 68.60 1.72 43.31 16 11 H -0.26 -11.20 6.70 99.48 0.67 -10.54 16 12 H -0.30 -13.86 7.11 99.48 0.71 -13.15 16 13 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 14 S 2.68 112.99 5.47 -56.49 -0.31 112.68 16 15 O -0.98 -45.72 15.52 -128.00 -1.99 -47.70 16 16 O -1.00 -43.96 16.48 -128.00 -2.11 -46.07 16 17 C -0.78 -27.50 5.87 22.06 0.13 -27.38 16 18 C -0.02 -0.69 10.32 22.40 0.23 -0.45 16 19 C -0.09 -2.73 7.18 24.04 0.17 -2.56 16 20 C 0.56 15.33 7.93 69.97 0.55 15.88 16 21 O -0.50 -14.93 16.66 19.44 0.32 -14.61 16 22 O -0.35 -7.92 10.58 -56.81 -0.60 -8.52 16 23 C 0.03 0.36 10.57 113.37 1.20 1.56 16 24 O -0.14 -4.20 10.67 -4.89 -0.05 -4.26 16 25 C 0.20 6.20 7.31 24.98 0.18 6.38 16 26 C -0.12 -3.41 9.29 71.23 0.66 -2.75 16 27 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 29 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.07 2.02 8.14 -2.38 -0.02 2.00 16 31 H 0.05 1.50 7.83 -2.39 -0.02 1.49 16 32 H 0.07 2.77 3.07 -2.38 -0.01 2.77 16 33 H 0.11 3.72 7.00 -2.39 -0.02 3.70 16 34 H 0.27 14.13 8.31 -92.70 -0.77 13.36 16 35 H 0.19 5.40 8.06 -2.91 -0.02 5.37 16 36 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.14 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.12 3.49 7.92 -2.38 -0.02 3.47 16 40 H 0.13 2.64 8.14 -2.39 -0.02 2.62 16 41 H 0.11 3.60 5.41 -2.39 -0.01 3.59 16 Total: -1.00 -67.24 360.91 2.44 -64.80 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: 1.04 Total: 15.13 kcal Atomic # 6 Polarization: -17.76 SS G_CDS: 6.44 Total: -11.32 kcal Atomic # 7 Polarization: -87.04 SS G_CDS: -0.54 Total: -87.58 kcal Atomic # 8 Polarization: -131.11 SS G_CDS: -5.91 Total: -137.02 kcal Atomic # 14 Polarization: 41.59 SS G_CDS: 1.72 Total: 43.31 kcal Atomic # 16 Polarization: 112.99 SS G_CDS: -0.31 Total: 112.68 kcal Total: -67.24 2.44 -64.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414449277.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.778 kcal (2) G-P(sol) polarization free energy of solvation -67.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds