Wall clock time and date at job start Wed Apr 1 2020 04:31:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86794 * 119.99890 * 2 1 4 4 H 1.48503 * 109.47229 * 239.99933 * 3 2 1 5 5 H 1.48499 * 109.47458 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46945 * 120.00503 * 3 2 1 7 7 C 1.37876 * 119.99494 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99612 * 179.97438 * 7 2 1 9 9 C 1.50691 * 120.00431 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47380 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47491 * 179.97438 * 10 9 7 12 12 S 1.81395 * 109.47266 * 180.02562 * 11 10 9 13 13 O 1.42097 * 110.54339 * 68.37636 * 12 11 10 14 14 O 1.42101 * 110.54413 * 291.62537 * 12 11 10 15 15 N 1.65605 * 104.44886 * 180.02562 * 12 11 10 16 16 C 1.46494 * 119.99849 * 65.00138 * 15 12 11 17 17 C 1.50705 * 109.47044 * 165.00200 * 16 15 12 18 18 O 1.21294 * 119.99723 * 359.97438 * 17 16 15 19 19 C 1.46797 * 119.99854 * 180.02562 * 17 16 15 20 20 C 1.40215 * 120.21829 * 179.97438 * 19 17 16 21 21 F 1.35103 * 120.10905 * 359.70135 * 20 19 17 22 22 C 1.38155 * 119.77466 * 179.97438 * 20 19 17 23 23 C 1.38343 * 120.21781 * 0.02562 * 22 20 19 24 24 C 1.38333 * 120.45286 * 359.95453 * 23 22 20 25 25 C 1.38156 * 120.22409 * 0.04525 * 24 23 22 26 26 F 1.35098 * 120.11845 * 179.97438 * 25 24 23 27 27 H 0.97001 * 119.99208 * 359.97438 * 1 2 3 28 28 H 1.09004 * 109.47402 * 59.99901 * 9 7 2 29 29 H 1.09002 * 109.47173 * 299.99697 * 9 7 2 30 30 H 1.09004 * 109.46702 * 59.99756 * 10 9 7 31 31 H 1.09000 * 109.47288 * 299.99712 * 10 9 7 32 32 H 1.09004 * 109.47195 * 59.99746 * 11 10 9 33 33 H 1.09000 * 109.46856 * 300.00267 * 11 10 9 34 34 H 0.97006 * 119.99794 * 244.99960 * 15 12 11 35 35 H 1.08999 * 109.47278 * 45.00169 * 16 15 12 36 36 H 1.09001 * 109.47330 * 284.99435 * 16 15 12 37 37 H 1.07999 * 119.88787 * 180.02562 * 22 20 19 38 38 H 1.08001 * 119.76826 * 179.97438 * 23 22 20 39 39 H 1.08005 * 119.89092 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 2.2452 -3.6621 -0.0027 11 6 1.4802 -4.9871 -0.0033 12 16 2.6589 -6.3659 -0.0037 13 8 3.3556 -6.4267 1.2332 14 8 3.3558 -6.4258 -1.2407 15 7 1.7085 -7.7220 -0.0050 16 6 0.8496 -8.0134 -1.1554 17 6 0.3831 -9.4446 -1.0843 18 8 0.7341 -10.1518 -0.1635 19 6 -0.4952 -9.9832 -2.1300 20 6 -0.9315 -11.3143 -2.0687 21 9 -0.5402 -12.1095 -1.0491 22 6 -1.7584 -11.8115 -3.0576 23 6 -2.1554 -11.0008 -4.1060 24 6 -1.7307 -9.6861 -4.1754 25 6 -0.9036 -9.1698 -3.1966 26 9 -0.4898 -7.8857 -3.2667 27 1 -0.4849 0.8401 0.0004 28 1 0.6247 -2.5563 -0.8920 29 1 0.6241 -2.5575 0.8880 30 1 2.8719 -3.6051 0.8873 31 1 2.8718 -3.6036 -0.8927 32 1 0.8532 -5.0443 -0.8931 33 1 0.8538 -5.0453 0.8869 34 1 1.7206 -8.3235 0.7560 35 1 1.4115 -7.8597 -2.0766 36 1 -0.0142 -7.3487 -1.1415 37 1 -2.0959 -12.8363 -3.0120 38 1 -2.8015 -11.3971 -4.8753 39 1 -2.0466 -9.0611 -4.9977 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000425194195.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:31:45 Heat of formation + Delta-G solvation = -176.369765 kcal Electronic energy + Delta-G solvation = -27491.444620 eV Core-core repulsion = 22969.514275 eV Total energy + Delta-G solvation = -4521.930346 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.084 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.77673 -49.52517 -40.27951 -38.82814 -36.92327 -35.78717 -34.93606 -34.67941 -32.27902 -32.19118 -31.05148 -27.98800 -27.82088 -24.37883 -23.73404 -23.35736 -21.05399 -20.66543 -19.34025 -18.75459 -18.12576 -17.81159 -16.98484 -16.75099 -16.67413 -16.37880 -16.19300 -15.90548 -15.79555 -15.34221 -15.23889 -15.21979 -15.11051 -14.48985 -14.37312 -13.99337 -13.38664 -13.28623 -12.62685 -12.59996 -12.55813 -12.40559 -12.28718 -12.03475 -11.95836 -11.83948 -11.78776 -11.24274 -10.89826 -10.88028 -10.46438 -10.37663 -9.95355 -9.86111 -9.80332 -9.44673 -9.34700 -9.11171 -8.40531 -6.05900 -4.08898 -0.25838 0.30095 0.41234 1.69360 2.70368 2.74351 3.07602 3.26589 3.32271 3.36056 3.39406 3.65452 3.88818 3.93317 4.00736 4.35643 4.38407 4.42356 4.46957 4.87010 4.92660 4.98505 5.02425 5.10978 5.16303 5.22408 5.25810 5.30585 5.43634 5.49508 5.87477 5.98722 6.26207 6.43857 6.81729 6.86756 6.90596 7.56374 7.66469 7.92106 8.32580 8.97110 9.55758 11.05308 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.016124 B = 0.002393 C = 0.002168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1736.128617 B =11696.076168 C =12913.216695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.058 3.942 3 Si 0.895 3.105 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.527 4.527 8 H 0.058 0.942 9 C 0.031 3.969 10 C -0.106 4.106 11 C -0.609 4.609 12 S 2.602 3.398 13 O -0.957 6.957 14 O -0.960 6.960 15 N -1.120 6.120 16 C 0.072 3.928 17 C 0.396 3.604 18 O -0.425 6.425 19 C -0.244 4.244 20 C 0.189 3.811 21 F -0.107 7.107 22 C -0.180 4.180 23 C -0.026 4.026 24 C -0.175 4.175 25 C 0.179 3.821 26 F -0.112 7.112 27 H 0.262 0.738 28 H 0.021 0.979 29 H 0.021 0.979 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.128 0.872 33 H 0.131 0.869 34 H 0.422 0.578 35 H 0.122 0.878 36 H 0.108 0.892 37 H 0.151 0.849 38 H 0.151 0.849 39 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.186 -25.701 -9.810 28.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.144 4.144 3 Si 0.723 3.277 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.565 4.565 8 H 0.076 0.924 9 C -0.008 4.008 10 C -0.145 4.145 11 C -0.741 4.741 12 S 2.698 3.302 13 O -0.947 6.947 14 O -0.950 6.950 15 N -0.880 5.880 16 C -0.055 4.055 17 C 0.271 3.729 18 O -0.298 6.298 19 C -0.248 4.248 20 C 0.169 3.831 21 F -0.085 7.085 22 C -0.198 4.198 23 C -0.045 4.045 24 C -0.193 4.193 25 C 0.158 3.842 26 F -0.090 7.090 27 H 0.072 0.928 28 H 0.039 0.961 29 H 0.039 0.961 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.146 0.854 33 H 0.149 0.851 34 H 0.258 0.742 35 H 0.139 0.861 36 H 0.126 0.874 37 H 0.168 0.832 38 H 0.169 0.831 39 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -7.151 -25.858 -9.421 28.435 hybrid contribution -0.294 1.009 0.383 1.119 sum -7.445 -24.849 -9.038 27.470 Atomic orbital electron populations 1.69953 1.06086 1.26882 1.50555 1.25018 0.94894 0.99363 0.95093 0.86609 0.79564 0.82801 0.78775 1.20110 1.21260 1.20121 1.21216 0.93235 0.90895 1.51143 0.92403 1.19061 0.93523 0.90411 0.97755 1.21513 0.99413 0.91538 1.02085 1.30558 1.16367 1.15770 1.11393 1.05346 0.75560 0.75006 0.74333 1.93592 1.70394 1.85726 1.45019 1.93566 1.70168 1.85661 1.45641 1.55673 1.61958 1.43157 1.27250 1.21819 0.96787 0.95384 0.91558 1.22059 0.77691 0.89816 0.83355 1.90605 1.47981 1.59730 1.31468 1.20492 1.08575 0.94997 1.00704 1.17587 0.93412 0.86660 0.85427 1.91639 1.88370 1.72004 1.56501 1.21272 1.00972 1.02619 0.94986 1.21149 0.95203 0.91919 0.96191 1.21276 1.00454 0.97377 1.00241 1.17599 0.94050 0.78829 0.93675 1.91608 1.87777 1.34024 1.95627 0.92849 0.96081 0.96094 0.91494 0.91454 0.85369 0.85090 0.74152 0.86063 0.87405 0.83150 0.83086 0.82831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.47 13.29 55.43 0.74 -25.74 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.55 29.54 -169.99 -5.02 16.53 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.53 -14.78 9.11 -34.44 -0.31 -15.09 16 8 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 9 C 0.03 0.77 4.97 -27.89 -0.14 0.64 16 10 C -0.11 -2.13 5.16 -26.73 -0.14 -2.27 16 11 C -0.61 -9.22 6.07 37.16 0.23 -8.99 16 12 S 2.60 39.15 5.46 -107.50 -0.59 38.56 16 13 O -0.96 -17.39 18.08 -57.54 -1.04 -18.43 16 14 O -0.96 -16.85 17.49 -57.54 -1.01 -17.86 16 15 N -1.12 -13.67 5.82 -11.66 -0.07 -13.73 16 16 C 0.07 0.74 4.80 -5.19 -0.02 0.72 16 17 C 0.40 4.29 7.18 -30.85 -0.22 4.07 16 18 O -0.42 -5.70 14.72 5.55 0.08 -5.62 16 19 C -0.24 -2.12 5.88 -104.96 -0.62 -2.74 16 20 C 0.19 1.52 7.29 -38.87 -0.28 1.24 16 21 F -0.11 -1.11 15.55 2.25 0.04 -1.07 16 22 C -0.18 -0.83 10.01 -39.57 -0.40 -1.22 16 23 C -0.03 -0.08 10.03 -39.51 -0.40 -0.48 16 24 C -0.17 -0.75 10.01 -39.58 -0.40 -1.15 16 25 C 0.18 1.24 7.26 -38.87 -0.28 0.96 16 26 F -0.11 -0.87 13.76 2.25 0.03 -0.84 16 27 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 28 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 31 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 32 H 0.13 1.65 8.14 -51.92 -0.42 1.23 16 33 H 0.13 1.78 8.14 -51.92 -0.42 1.35 16 34 H 0.42 5.00 7.67 -34.47 -0.26 4.73 16 35 H 0.12 1.19 6.96 -51.93 -0.36 0.83 16 36 H 0.11 0.85 7.41 -51.93 -0.38 0.47 16 37 H 0.15 0.37 8.06 -52.49 -0.42 -0.06 16 38 H 0.15 -0.03 8.06 -52.49 -0.42 -0.45 16 39 H 0.15 0.35 8.06 -52.48 -0.42 -0.08 16 LS Contribution 359.37 15.07 5.42 5.42 Total: -1.00 -37.17 359.37 -8.86 -46.03 By element: Atomic # 1 Polarization: 3.89 SS G_CDS: -4.36 Total: -0.47 kcal Atomic # 6 Polarization: -19.69 SS G_CDS: -3.08 Total: -22.77 kcal Atomic # 7 Polarization: -40.14 SS G_CDS: 0.67 Total: -39.47 kcal Atomic # 8 Polarization: -39.95 SS G_CDS: -1.97 Total: -41.92 kcal Atomic # 9 Polarization: -1.98 SS G_CDS: 0.07 Total: -1.91 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Atomic # 16 Polarization: 39.15 SS G_CDS: -0.59 Total: 38.56 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -37.17 -8.86 -46.03 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425194195.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.342 kcal (2) G-P(sol) polarization free energy of solvation -37.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds