Wall clock time and date at job start Wed Apr 1 2020 04:31:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86794 * 119.99890 * 2 1 4 4 H 1.48503 * 109.47229 * 239.99933 * 3 2 1 5 5 H 1.48499 * 109.47458 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46945 * 120.00503 * 3 2 1 7 7 C 1.37876 * 119.99494 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99612 * 179.97438 * 7 2 1 9 9 C 1.50691 * 120.00431 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47380 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47491 * 179.97438 * 10 9 7 12 12 S 1.81395 * 109.47266 * 180.02562 * 11 10 9 13 13 O 1.42097 * 110.54339 * 68.37636 * 12 11 10 14 14 O 1.42101 * 110.54413 * 291.62537 * 12 11 10 15 15 N 1.65605 * 104.44886 * 180.02562 * 12 11 10 16 16 C 1.46494 * 119.99849 * 65.00138 * 15 12 11 17 17 C 1.50705 * 109.47044 * 165.00200 * 16 15 12 18 18 O 1.21294 * 119.99723 * 359.97438 * 17 16 15 19 19 C 1.46797 * 119.99854 * 180.02562 * 17 16 15 20 20 C 1.40215 * 120.21829 * 179.97438 * 19 17 16 21 21 F 1.35103 * 120.10905 * 359.70135 * 20 19 17 22 22 C 1.38155 * 119.77466 * 179.97438 * 20 19 17 23 23 C 1.38343 * 120.21781 * 0.02562 * 22 20 19 24 24 C 1.38333 * 120.45286 * 359.95453 * 23 22 20 25 25 C 1.38156 * 120.22409 * 0.04525 * 24 23 22 26 26 F 1.35098 * 120.11845 * 179.97438 * 25 24 23 27 27 H 0.97001 * 119.99208 * 359.97438 * 1 2 3 28 28 H 1.09004 * 109.47402 * 59.99901 * 9 7 2 29 29 H 1.09002 * 109.47173 * 299.99697 * 9 7 2 30 30 H 1.09004 * 109.46702 * 59.99756 * 10 9 7 31 31 H 1.09000 * 109.47288 * 299.99712 * 10 9 7 32 32 H 1.09004 * 109.47195 * 59.99746 * 11 10 9 33 33 H 1.09000 * 109.46856 * 300.00267 * 11 10 9 34 34 H 0.97006 * 119.99794 * 244.99960 * 15 12 11 35 35 H 1.08999 * 109.47278 * 45.00169 * 16 15 12 36 36 H 1.09001 * 109.47330 * 284.99435 * 16 15 12 37 37 H 1.07999 * 119.88787 * 180.02562 * 22 20 19 38 38 H 1.08001 * 119.76826 * 179.97438 * 23 22 20 39 39 H 1.08005 * 119.89092 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 2.2452 -3.6621 -0.0027 11 6 1.4802 -4.9871 -0.0033 12 16 2.6589 -6.3659 -0.0037 13 8 3.3556 -6.4267 1.2332 14 8 3.3558 -6.4258 -1.2407 15 7 1.7085 -7.7220 -0.0050 16 6 0.8496 -8.0134 -1.1554 17 6 0.3831 -9.4446 -1.0843 18 8 0.7341 -10.1518 -0.1635 19 6 -0.4952 -9.9832 -2.1300 20 6 -0.9315 -11.3143 -2.0687 21 9 -0.5402 -12.1095 -1.0491 22 6 -1.7584 -11.8115 -3.0576 23 6 -2.1554 -11.0008 -4.1060 24 6 -1.7307 -9.6861 -4.1754 25 6 -0.9036 -9.1698 -3.1966 26 9 -0.4898 -7.8857 -3.2667 27 1 -0.4849 0.8401 0.0004 28 1 0.6247 -2.5563 -0.8920 29 1 0.6241 -2.5575 0.8880 30 1 2.8719 -3.6051 0.8873 31 1 2.8718 -3.6036 -0.8927 32 1 0.8532 -5.0443 -0.8931 33 1 0.8538 -5.0453 0.8869 34 1 1.7206 -8.3235 0.7560 35 1 1.4115 -7.8597 -2.0766 36 1 -0.0142 -7.3487 -1.1415 37 1 -2.0959 -12.8363 -3.0120 38 1 -2.8015 -11.3971 -4.8753 39 1 -2.0466 -9.0611 -4.9977 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000425194195.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:31:44 Heat of formation + Delta-G solvation = -203.098230 kcal Electronic energy + Delta-G solvation = -27492.603654 eV Core-core repulsion = 22969.514275 eV Total energy + Delta-G solvation = -4523.089379 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.084 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -50.30054 -50.15029 -41.02042 -39.34367 -38.27096 -37.13760 -36.46683 -35.91843 -34.16197 -32.81317 -31.45877 -29.66173 -28.78320 -25.62904 -24.92499 -23.81886 -22.44512 -21.71233 -20.50395 -19.33847 -18.95948 -18.73950 -18.50470 -17.66024 -17.45085 -17.41935 -17.15002 -16.75424 -16.52753 -16.49966 -16.40705 -16.12854 -15.80266 -15.73929 -15.62807 -14.83415 -14.48767 -14.29600 -14.01369 -13.75909 -13.52406 -13.33282 -13.26463 -13.19899 -13.03872 -12.99500 -12.95504 -12.85706 -12.72854 -12.65194 -12.17468 -11.73554 -11.39305 -11.22857 -11.15308 -10.59056 -10.55731 -10.29117 -9.88107 -8.21702 -6.32322 -0.84209 -0.79039 -0.11253 1.03282 1.41049 1.43381 1.51263 1.60241 2.31105 2.40503 2.48746 2.61953 2.71322 3.11929 3.16563 3.20595 3.40114 3.60749 3.71494 3.84948 3.91899 4.10618 4.13100 4.15627 4.38035 4.43042 4.58156 4.65649 4.68554 4.87989 4.94552 4.96716 5.07497 5.11827 5.46714 5.61400 5.64672 5.80667 5.84354 6.10167 6.20960 6.83079 7.36777 8.89563 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.016124 B = 0.002393 C = 0.002168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1736.128617 B =11696.076168 C =12913.216695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.003 3.997 3 Si 0.962 3.038 4 H -0.267 1.267 5 H -0.281 1.281 6 H -0.269 1.269 7 C -0.553 4.553 8 H 0.060 0.940 9 C 0.031 3.969 10 C -0.107 4.107 11 C -0.605 4.605 12 S 2.631 3.369 13 O -0.989 6.989 14 O -0.985 6.985 15 N -1.113 6.113 16 C 0.060 3.940 17 C 0.396 3.604 18 O -0.464 6.464 19 C -0.267 4.267 20 C 0.161 3.839 21 F -0.130 7.130 22 C -0.170 4.170 23 C -0.006 4.006 24 C -0.166 4.166 25 C 0.167 3.833 26 F -0.121 7.121 27 H 0.265 0.735 28 H 0.007 0.993 29 H 0.003 0.997 30 H 0.065 0.935 31 H 0.070 0.930 32 H 0.154 0.846 33 H 0.149 0.851 34 H 0.425 0.575 35 H 0.128 0.872 36 H 0.135 0.865 37 H 0.175 0.825 38 H 0.195 0.805 39 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.393 -26.257 -11.835 30.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.195 4.195 3 Si 0.786 3.214 4 H -0.192 1.192 5 H -0.206 1.206 6 H -0.194 1.194 7 C -0.591 4.591 8 H 0.078 0.922 9 C -0.007 4.007 10 C -0.146 4.146 11 C -0.737 4.737 12 S 2.727 3.273 13 O -0.980 6.980 14 O -0.974 6.974 15 N -0.875 5.875 16 C -0.067 4.067 17 C 0.274 3.726 18 O -0.340 6.340 19 C -0.270 4.270 20 C 0.141 3.859 21 F -0.108 7.108 22 C -0.189 4.189 23 C -0.024 4.024 24 C -0.184 4.184 25 C 0.147 3.853 26 F -0.099 7.099 27 H 0.074 0.926 28 H 0.026 0.974 29 H 0.021 0.979 30 H 0.083 0.917 31 H 0.089 0.911 32 H 0.172 0.828 33 H 0.167 0.833 34 H 0.262 0.738 35 H 0.146 0.854 36 H 0.153 0.847 37 H 0.192 0.808 38 H 0.213 0.787 39 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -8.353 -26.412 -11.459 29.978 hybrid contribution -0.029 1.110 0.909 1.435 sum -8.382 -25.303 -10.551 28.667 Atomic orbital electron populations 1.70064 1.07571 1.27930 1.51351 1.25914 0.95814 1.03146 0.94614 0.85552 0.78373 0.78299 0.79171 1.19159 1.20632 1.19422 1.21715 0.93743 0.92546 1.51082 0.92197 1.18962 0.94000 0.91645 0.96105 1.21337 0.98753 0.92272 1.02281 1.30478 1.16432 1.13074 1.13696 1.04290 0.75097 0.75007 0.72950 1.93544 1.71669 1.86365 1.46381 1.93531 1.71149 1.86194 1.46569 1.55336 1.62034 1.42017 1.28075 1.22175 0.97479 0.96136 0.90862 1.22328 0.77342 0.89593 0.83341 1.90585 1.49807 1.60492 1.33095 1.20401 1.09632 0.95888 1.01118 1.18011 0.95109 0.86565 0.86207 1.91578 1.88933 1.72502 1.57767 1.21639 0.99300 1.03940 0.93975 1.21691 0.93910 0.90878 0.95890 1.21689 0.98795 0.98224 0.99708 1.17810 0.94972 0.78457 0.94090 1.91579 1.88057 1.34571 1.95680 0.92634 0.97438 0.97900 0.91654 0.91139 0.82826 0.83333 0.73788 0.85424 0.84731 0.80803 0.78744 0.80249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.32 13.29 21.45 0.28 -55.04 16 2 C 0.00 0.19 5.46 84.65 0.46 0.66 16 3 Si 0.96 44.01 29.54 68.60 2.03 46.04 16 4 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 5 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 6 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 7 C -0.55 -31.25 9.11 25.60 0.23 -31.02 16 8 H 0.06 3.26 7.74 -2.91 -0.02 3.24 16 9 C 0.03 1.59 4.97 29.85 0.15 1.74 16 10 C -0.11 -4.29 5.16 30.59 0.16 -4.13 16 11 C -0.61 -17.77 6.07 71.98 0.44 -17.33 16 12 S 2.63 78.33 5.46 -56.49 -0.31 78.02 16 13 O -0.99 -36.11 18.08 -127.65 -2.31 -38.42 16 14 O -0.98 -34.23 17.49 -127.65 -2.23 -36.46 16 15 N -1.11 -26.98 5.82 -190.79 -1.11 -28.09 16 16 C 0.06 1.22 4.80 85.64 0.41 1.63 16 17 C 0.40 8.81 7.18 27.93 0.20 9.01 16 18 O -0.46 -13.12 14.72 -3.07 -0.05 -13.16 16 19 C -0.27 -4.57 5.88 -20.08 -0.12 -4.69 16 20 C 0.16 2.52 7.29 22.73 0.17 2.69 16 21 F -0.13 -2.80 15.55 44.97 0.70 -2.10 16 22 C -0.17 -1.12 10.01 22.27 0.22 -0.89 16 23 C -0.01 -0.01 10.03 22.32 0.22 0.21 16 24 C -0.17 -0.86 10.01 22.27 0.22 -0.63 16 25 C 0.17 2.06 7.26 22.73 0.17 2.22 16 26 F -0.12 -1.71 13.76 44.97 0.62 -1.09 16 27 H 0.26 14.83 8.31 -92.71 -0.77 14.06 16 28 H 0.01 0.38 8.14 -2.38 -0.02 0.36 16 29 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 30 H 0.06 2.60 8.14 -2.38 -0.02 2.58 16 31 H 0.07 2.74 8.14 -2.39 -0.02 2.72 16 32 H 0.15 3.71 8.14 -2.39 -0.02 3.69 16 33 H 0.15 3.86 8.14 -2.39 -0.02 3.84 16 34 H 0.42 10.25 7.67 -96.74 -0.74 9.51 16 35 H 0.13 2.44 6.96 -2.39 -0.02 2.43 16 36 H 0.14 1.97 7.41 -2.39 -0.02 1.95 16 37 H 0.17 0.28 8.06 -2.91 -0.02 0.25 16 38 H 0.20 -1.28 8.06 -2.91 -0.02 -1.31 16 39 H 0.18 0.02 8.06 -2.91 -0.02 -0.01 16 Total: -1.00 -82.42 359.37 0.92 -81.50 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: 0.37 Total: 9.35 kcal Atomic # 6 Polarization: -43.48 SS G_CDS: 2.93 Total: -40.55 kcal Atomic # 7 Polarization: -82.30 SS G_CDS: -0.83 Total: -83.13 kcal Atomic # 8 Polarization: -83.46 SS G_CDS: -4.59 Total: -88.04 kcal Atomic # 9 Polarization: -4.51 SS G_CDS: 1.32 Total: -3.19 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.04 kcal Atomic # 16 Polarization: 78.33 SS G_CDS: -0.31 Total: 78.02 kcal Total: -82.42 0.92 -81.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425194195.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.598 kcal (2) G-P(sol) polarization free energy of solvation -82.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -204.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -203.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds