Wall clock time and date at job start Wed Apr 1 2020 04:27:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39789 * 120.07033 * 111.09289 * 3 2 1 5 5 C 1.37678 * 119.94503 * 179.67637 * 4 3 2 6 6 C 1.39136 * 120.08960 * 0.57474 * 5 4 3 7 7 N 1.39408 * 119.93153 * 179.72081 * 6 5 4 8 8 C 1.34780 * 119.99424 * 21.06353 * 7 6 5 9 9 O 1.21371 * 120.00320 * 5.32999 * 8 7 6 10 10 C 1.49357 * 119.99499 * 185.33012 * 8 7 6 11 11 O 1.21357 * 120.00192 * 5.16550 * 10 8 7 12 12 N 1.34775 * 119.99849 * 185.16919 * 10 8 7 13 13 C 1.46500 * 119.99806 * 184.99775 * 12 10 8 14 14 C 1.53008 * 109.47022 * 184.49376 * 13 12 10 15 15 C 1.50708 * 115.54835 * 303.78612 * 14 13 12 16 16 H 1.07997 * 120.00198 * 92.74026 * 15 14 13 17 17 C 1.37883 * 119.99730 * 272.46785 * 15 14 13 18 18 N 1.31518 * 119.99458 * 355.77923 * 17 15 14 19 19 Si 1.86791 * 119.99901 * 175.78237 * 17 15 14 20 20 H 1.48498 * 109.47568 * 89.99752 * 19 17 15 21 21 H 1.48506 * 109.47242 * 209.99976 * 19 17 15 22 22 H 1.48504 * 109.46952 * 329.99453 * 19 17 15 23 23 C 1.52999 * 117.50113 * 89.45378 * 14 13 12 24 24 C 1.52989 * 117.49954 * 158.11601 * 14 13 12 25 25 C 1.39234 * 120.14291 * 359.44233 * 6 5 4 26 26 Cl 1.73601 * 119.97857 * 180.27300 * 25 6 5 27 27 C 1.37812 * 120.04778 * 0.25939 * 25 6 5 28 28 H 1.07996 * 120.02388 * 359.97438 * 4 3 2 29 29 H 1.08002 * 119.95584 * 180.29092 * 5 4 3 30 30 H 0.96995 * 120.00194 * 201.06002 * 7 6 5 31 31 H 0.97005 * 120.00076 * 4.98968 * 12 10 8 32 32 H 1.08997 * 109.47233 * 64.49201 * 13 12 10 33 33 H 1.08997 * 109.46958 * 304.48697 * 13 12 10 34 34 H 0.97005 * 119.98851 * 185.00659 * 18 17 15 35 35 H 1.09000 * 117.49859 * 215.00595 * 23 14 13 36 36 H 1.09000 * 117.49577 * 0.02562 * 23 14 13 37 37 H 1.08998 * 117.50235 * 359.97438 * 24 14 13 38 38 H 1.09003 * 117.50216 * 144.97219 * 24 14 13 39 39 H 1.08000 * 120.03931 * 179.97438 * 27 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2682 0.4363 -1.1287 5 6 4.6450 0.4421 -1.1235 6 6 5.3402 0.0038 -0.0008 7 7 6.7342 0.0056 -0.0012 8 6 7.4067 0.7940 -0.8630 9 8 6.8025 1.5729 -1.5711 10 6 8.8955 0.7092 -0.9466 11 8 9.4921 -0.1332 -0.3085 12 7 9.5764 1.5682 -1.7308 13 6 11.0239 1.4166 -1.8988 14 6 11.5638 2.5756 -2.7393 15 6 10.9229 2.7515 -4.0919 16 1 10.0822 3.4194 -4.2084 17 6 11.4134 2.0639 -5.1818 18 7 12.4906 1.3194 -5.0591 19 14 10.5479 2.1899 -6.8323 20 1 11.1170 3.3235 -7.6044 21 1 10.7417 0.9278 -7.5905 22 1 9.0969 2.4184 -6.6141 23 6 12.0081 3.8385 -1.9985 24 6 13.0527 2.9048 -2.6149 25 6 4.6465 -0.4313 1.1253 26 17 5.5182 -0.9707 2.5264 27 6 3.2684 -0.4338 1.1287 28 1 2.7297 0.7726 -2.0023 29 1 5.1862 0.7831 -1.9937 30 1 7.2202 -0.5605 0.6187 31 1 9.1081 2.2867 -2.1840 32 1 11.2343 0.4734 -2.4029 33 1 11.5056 1.4216 -0.9211 34 1 12.8776 0.8942 -5.8404 35 1 11.8367 4.7965 -2.4895 36 1 11.9160 3.8435 -0.9124 37 1 13.6476 2.2960 -1.9341 38 1 13.5689 3.2481 -3.5114 39 1 2.7305 -0.7717 2.0021 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430342527.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:27:43 Heat of formation + Delta-G solvation = 13.027373 kcal Electronic energy + Delta-G solvation = -26328.090945 eV Core-core repulsion = 22263.018955 eV Total energy + Delta-G solvation = -4065.071990 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.082 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.37455 -39.73551 -38.46264 -37.25073 -36.85428 -36.60932 -35.35929 -33.54161 -32.05156 -31.46575 -30.67838 -27.35851 -25.70637 -24.98047 -23.61467 -22.82136 -21.22511 -20.23896 -19.71896 -19.53836 -18.68153 -17.83915 -16.58523 -16.30667 -16.10172 -15.78257 -15.38652 -14.95822 -14.83077 -14.64042 -14.40378 -14.29786 -14.07796 -13.93692 -13.50325 -13.28057 -13.21424 -12.89181 -12.82924 -12.18236 -12.09304 -11.89551 -11.72102 -11.55037 -11.37746 -11.07802 -11.02639 -10.98777 -10.59321 -10.30771 -9.74997 -9.50920 -9.37318 -9.18539 -8.69404 -8.60720 -8.51594 -8.24804 -6.16977 -4.27971 0.09968 0.64917 1.40166 1.51946 2.16082 2.32546 2.47552 3.20782 3.22078 3.29412 3.31900 3.39386 3.45670 3.60693 4.16333 4.28227 4.45185 4.55772 4.68540 4.83248 5.09644 5.14268 5.24958 5.41503 5.49739 5.67774 5.79056 5.85963 6.17901 6.24838 6.30877 6.36110 6.54590 6.65080 6.66398 6.87823 7.01465 7.09876 7.20078 7.35867 7.46731 7.72303 7.86037 8.20773 8.29606 8.74725 9.40730 10.89544 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.013901 B = 0.002563 C = 0.002264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2013.811389 B =10920.484197 C =12362.757779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C 0.260 3.740 3 C -0.045 4.045 4 C -0.036 4.036 5 C -0.131 4.131 6 C 0.200 3.800 7 N -0.645 5.645 8 C 0.513 3.487 9 O -0.484 6.484 10 C 0.497 3.503 11 O -0.533 6.533 12 N -0.657 5.657 13 C 0.158 3.842 14 C 0.018 3.982 15 C -0.504 4.504 16 H 0.062 0.938 17 C 0.075 3.925 18 N -0.874 5.874 19 Si 0.890 3.110 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.271 1.271 23 C -0.210 4.210 24 C -0.137 4.137 25 C -0.078 4.078 26 Cl -0.048 7.048 27 C -0.036 4.036 28 H 0.145 0.855 29 H 0.175 0.825 30 H 0.428 0.572 31 H 0.417 0.583 32 H 0.075 0.925 33 H 0.051 0.949 34 H 0.262 0.738 35 H 0.079 0.921 36 H 0.065 0.935 37 H 0.064 0.936 38 H 0.089 0.911 39 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.170 -3.617 11.617 17.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.091 5.091 2 C -0.056 4.056 3 C -0.050 4.050 4 C -0.057 4.057 5 C -0.151 4.151 6 C 0.101 3.899 7 N -0.290 5.290 8 C 0.296 3.704 9 O -0.356 6.356 10 C 0.275 3.725 11 O -0.412 6.412 12 N -0.306 5.306 13 C 0.036 3.964 14 C 0.017 3.983 15 C -0.541 4.541 16 H 0.081 0.919 17 C -0.130 4.130 18 N -0.510 5.510 19 Si 0.717 3.283 20 H -0.206 1.206 21 H -0.212 1.212 22 H -0.196 1.196 23 C -0.248 4.248 24 C -0.175 4.175 25 C -0.108 4.108 26 Cl -0.020 7.020 27 C -0.057 4.057 28 H 0.163 0.837 29 H 0.192 0.808 30 H 0.268 0.732 31 H 0.254 0.746 32 H 0.093 0.907 33 H 0.069 0.931 34 H 0.072 0.928 35 H 0.098 0.902 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.108 0.892 39 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -14.608 -3.869 11.521 19.002 hybrid contribution 0.237 -0.040 -0.703 0.743 sum -14.371 -3.909 10.818 18.407 Atomic orbital electron populations 1.81284 1.11912 1.08736 1.07191 1.25468 0.92335 0.93748 0.94002 1.15807 0.84603 1.08265 0.96353 1.21237 0.93551 0.94183 0.96760 1.21658 0.93764 1.01328 0.98392 1.17799 0.82999 0.96459 0.92688 1.43324 1.04223 1.43182 1.38256 1.20873 0.89990 0.79762 0.79781 1.90705 1.69429 1.34968 1.40534 1.19521 0.86475 0.83913 0.82547 1.90761 1.69322 1.36579 1.44540 1.45895 1.10596 1.29768 1.44390 1.21249 0.76231 1.01117 0.97846 1.19029 0.94853 0.90075 0.94304 1.20352 1.16409 1.26429 0.90914 0.91947 1.24994 0.94850 0.94253 0.98889 1.69990 1.20006 1.31085 1.29875 0.86619 0.80387 0.77523 0.83732 1.20619 1.21155 1.19554 1.23084 1.08473 0.96265 0.96950 1.22455 0.92665 1.01623 1.00755 1.20375 0.92337 1.09078 0.89022 1.98405 1.75890 1.88554 1.39107 1.20785 0.91088 0.96103 0.97757 0.83681 0.80817 0.73156 0.74612 0.90714 0.93097 0.92779 0.90199 0.91637 0.91723 0.89238 0.83433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -4.73 18.54 41.84 0.78 -3.95 16 2 C 0.26 2.33 15.33 -22.47 -0.34 1.99 16 3 C -0.05 -0.34 5.74 -106.82 -0.61 -0.95 16 4 C -0.04 -0.27 9.74 -39.21 -0.38 -0.65 16 5 C -0.13 -1.23 8.74 -39.45 -0.34 -1.57 16 6 C 0.20 1.95 6.48 -83.71 -0.54 1.40 16 7 N -0.64 -7.14 5.20 -10.25 -0.05 -7.19 16 8 C 0.51 6.99 7.72 -11.63 -0.09 6.91 16 9 O -0.48 -7.04 13.43 5.48 0.07 -6.97 16 10 C 0.50 8.12 7.88 -11.63 -0.09 8.02 16 11 O -0.53 -9.59 16.49 5.49 0.09 -9.50 16 12 N -0.66 -11.71 5.40 -60.76 -0.33 -12.04 16 13 C 0.16 3.20 5.57 -4.04 -0.02 3.17 16 14 C 0.02 0.40 1.64 -155.66 -0.26 0.14 16 15 C -0.50 -12.22 8.18 -34.43 -0.28 -12.50 16 16 H 0.06 1.50 7.82 -52.49 -0.41 1.09 16 17 C 0.07 1.88 5.42 -17.82 -0.10 1.78 16 18 N -0.87 -22.94 12.47 55.43 0.69 -22.25 16 19 Si 0.89 19.74 29.54 -169.99 -5.02 14.72 16 20 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 21 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 22 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 23 C -0.21 -4.12 9.93 -26.69 -0.27 -4.39 16 24 C -0.14 -2.94 9.05 -26.70 -0.24 -3.18 16 25 C -0.08 -0.65 6.33 -39.37 -0.25 -0.90 16 26 Cl -0.05 -0.39 27.71 -51.86 -1.44 -1.83 16 27 C -0.04 -0.25 9.52 -39.17 -0.37 -0.62 16 28 H 0.15 0.81 8.06 -52.49 -0.42 0.38 16 29 H 0.17 1.86 5.48 -52.49 -0.29 1.57 16 30 H 0.43 4.44 7.14 -40.82 -0.29 4.15 16 31 H 0.42 7.34 7.51 -40.82 -0.31 7.03 16 32 H 0.07 1.69 8.14 -51.93 -0.42 1.27 16 33 H 0.05 0.98 8.07 -51.93 -0.42 0.56 16 34 H 0.26 6.66 8.32 -40.82 -0.34 6.32 16 35 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 36 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 37 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 38 H 0.09 2.09 8.06 -51.93 -0.42 1.67 16 39 H 0.15 0.75 8.06 -52.49 -0.42 0.32 16 LS Contribution 368.45 15.07 5.55 5.55 Total: -1.00 -27.38 368.45 -7.66 -35.03 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: -3.81 Total: 9.75 kcal Atomic # 6 Polarization: 2.86 SS G_CDS: -4.19 Total: -1.33 kcal Atomic # 7 Polarization: -46.51 SS G_CDS: 1.09 Total: -45.43 kcal Atomic # 8 Polarization: -16.63 SS G_CDS: 0.16 Total: -16.46 kcal Atomic # 14 Polarization: 19.74 SS G_CDS: -5.02 Total: 14.72 kcal Atomic # 17 Polarization: -0.39 SS G_CDS: -1.44 Total: -1.83 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -27.38 -7.66 -35.03 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430342527.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.059 kcal (2) G-P(sol) polarization free energy of solvation -27.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.031 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds