Wall clock time and date at job start Wed Apr 1 2020 04:27:43
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.13602 * 1
3 3 C 1.43199 * 179.97438 * 2 1
4 4 C 1.39789 * 120.07033 * 111.09289 * 3 2 1
5 5 C 1.37678 * 119.94503 * 179.67637 * 4 3 2
6 6 C 1.39136 * 120.08960 * 0.57474 * 5 4 3
7 7 N 1.39408 * 119.93153 * 179.72081 * 6 5 4
8 8 C 1.34780 * 119.99424 * 21.06353 * 7 6 5
9 9 O 1.21371 * 120.00320 * 5.32999 * 8 7 6
10 10 C 1.49357 * 119.99499 * 185.33012 * 8 7 6
11 11 O 1.21357 * 120.00192 * 5.16550 * 10 8 7
12 12 N 1.34775 * 119.99849 * 185.16919 * 10 8 7
13 13 C 1.46500 * 119.99806 * 184.99775 * 12 10 8
14 14 C 1.53008 * 109.47022 * 184.49376 * 13 12 10
15 15 C 1.50708 * 115.54835 * 303.78612 * 14 13 12
16 16 H 1.07997 * 120.00198 * 92.74026 * 15 14 13
17 17 C 1.37883 * 119.99730 * 272.46785 * 15 14 13
18 18 N 1.31518 * 119.99458 * 355.77923 * 17 15 14
19 19 Si 1.86791 * 119.99901 * 175.78237 * 17 15 14
20 20 H 1.48498 * 109.47568 * 89.99752 * 19 17 15
21 21 H 1.48506 * 109.47242 * 209.99976 * 19 17 15
22 22 H 1.48504 * 109.46952 * 329.99453 * 19 17 15
23 23 C 1.52999 * 117.50113 * 89.45378 * 14 13 12
24 24 C 1.52989 * 117.49954 * 158.11601 * 14 13 12
25 25 C 1.39234 * 120.14291 * 359.44233 * 6 5 4
26 26 Cl 1.73601 * 119.97857 * 180.27300 * 25 6 5
27 27 C 1.37812 * 120.04778 * 0.25939 * 25 6 5
28 28 H 1.07996 * 120.02388 * 359.97438 * 4 3 2
29 29 H 1.08002 * 119.95584 * 180.29092 * 5 4 3
30 30 H 0.96995 * 120.00194 * 201.06002 * 7 6 5
31 31 H 0.97005 * 120.00076 * 4.98968 * 12 10 8
32 32 H 1.08997 * 109.47233 * 64.49201 * 13 12 10
33 33 H 1.08997 * 109.46958 * 304.48697 * 13 12 10
34 34 H 0.97005 * 119.98851 * 185.00659 * 18 17 15
35 35 H 1.09000 * 117.49859 * 215.00595 * 23 14 13
36 36 H 1.09000 * 117.49577 * 0.02562 * 23 14 13
37 37 H 1.08998 * 117.50235 * 359.97438 * 24 14 13
38 38 H 1.09003 * 117.50216 * 144.97219 * 24 14 13
39 39 H 1.08000 * 120.03931 * 179.97438 * 27 25 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.1360 0.0000 0.0000
3 6 2.5680 0.0006 0.0000
4 6 3.2682 0.4363 -1.1287
5 6 4.6450 0.4421 -1.1235
6 6 5.3402 0.0038 -0.0008
7 7 6.7342 0.0056 -0.0012
8 6 7.4067 0.7940 -0.8630
9 8 6.8025 1.5729 -1.5711
10 6 8.8955 0.7092 -0.9466
11 8 9.4921 -0.1332 -0.3085
12 7 9.5764 1.5682 -1.7308
13 6 11.0239 1.4166 -1.8988
14 6 11.5638 2.5756 -2.7393
15 6 10.9229 2.7515 -4.0919
16 1 10.0822 3.4194 -4.2084
17 6 11.4134 2.0639 -5.1818
18 7 12.4906 1.3194 -5.0591
19 14 10.5479 2.1899 -6.8323
20 1 11.1170 3.3235 -7.6044
21 1 10.7417 0.9278 -7.5905
22 1 9.0969 2.4184 -6.6141
23 6 12.0081 3.8385 -1.9985
24 6 13.0527 2.9048 -2.6149
25 6 4.6465 -0.4313 1.1253
26 17 5.5182 -0.9707 2.5264
27 6 3.2684 -0.4338 1.1287
28 1 2.7297 0.7726 -2.0023
29 1 5.1862 0.7831 -1.9937
30 1 7.2202 -0.5605 0.6187
31 1 9.1081 2.2867 -2.1840
32 1 11.2343 0.4734 -2.4029
33 1 11.5056 1.4216 -0.9211
34 1 12.8776 0.8942 -5.8404
35 1 11.8367 4.7965 -2.4895
36 1 11.9160 3.8435 -0.9124
37 1 13.6476 2.2960 -1.9341
38 1 13.5689 3.2481 -3.5114
39 1 2.7305 -0.7717 2.0021
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000430342527.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:27:43
Heat of formation + Delta-G solvation = 13.027373 kcal
Electronic energy + Delta-G solvation = -26328.090945 eV
Core-core repulsion = 22263.018955 eV
Total energy + Delta-G solvation = -4065.071990 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 347.082 amu
Computer time = 0.59 seconds
Orbital eigenvalues (eV)
-41.37455 -39.73551 -38.46264 -37.25073 -36.85428 -36.60932 -35.35929 -33.54161
-32.05156 -31.46575 -30.67838 -27.35851 -25.70637 -24.98047 -23.61467 -22.82136
-21.22511 -20.23896 -19.71896 -19.53836 -18.68153 -17.83915 -16.58523 -16.30667
-16.10172 -15.78257 -15.38652 -14.95822 -14.83077 -14.64042 -14.40378 -14.29786
-14.07796 -13.93692 -13.50325 -13.28057 -13.21424 -12.89181 -12.82924 -12.18236
-12.09304 -11.89551 -11.72102 -11.55037 -11.37746 -11.07802 -11.02639 -10.98777
-10.59321 -10.30771 -9.74997 -9.50920 -9.37318 -9.18539 -8.69404 -8.60720
-8.51594 -8.24804 -6.16977 -4.27971 0.09968 0.64917 1.40166 1.51946
2.16082 2.32546 2.47552 3.20782 3.22078 3.29412 3.31900 3.39386
3.45670 3.60693 4.16333 4.28227 4.45185 4.55772 4.68540 4.83248
5.09644 5.14268 5.24958 5.41503 5.49739 5.67774 5.79056 5.85963
6.17901 6.24838 6.30877 6.36110 6.54590 6.65080 6.66398 6.87823
7.01465 7.09876 7.20078 7.35867 7.46731 7.72303 7.86037 8.20773
8.29606 8.74725 9.40730 10.89544
Molecular weight = 347.08amu
Principal moments of inertia in cm(-1)
A = 0.013901 B = 0.002563 C = 0.002264
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2013.811389 B =10920.484197 C =12362.757779
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.416 5.416
2 C 0.260 3.740
3 C -0.045 4.045
4 C -0.036 4.036
5 C -0.131 4.131
6 C 0.200 3.800
7 N -0.645 5.645
8 C 0.513 3.487
9 O -0.484 6.484
10 C 0.497 3.503
11 O -0.533 6.533
12 N -0.657 5.657
13 C 0.158 3.842
14 C 0.018 3.982
15 C -0.504 4.504
16 H 0.062 0.938
17 C 0.075 3.925
18 N -0.874 5.874
19 Si 0.890 3.110
20 H -0.280 1.280
21 H -0.286 1.286
22 H -0.271 1.271
23 C -0.210 4.210
24 C -0.137 4.137
25 C -0.078 4.078
26 Cl -0.048 7.048
27 C -0.036 4.036
28 H 0.145 0.855
29 H 0.175 0.825
30 H 0.428 0.572
31 H 0.417 0.583
32 H 0.075 0.925
33 H 0.051 0.949
34 H 0.262 0.738
35 H 0.079 0.921
36 H 0.065 0.935
37 H 0.064 0.936
38 H 0.089 0.911
39 H 0.148 0.852
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -13.170 -3.617 11.617 17.930
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.091 5.091
2 C -0.056 4.056
3 C -0.050 4.050
4 C -0.057 4.057
5 C -0.151 4.151
6 C 0.101 3.899
7 N -0.290 5.290
8 C 0.296 3.704
9 O -0.356 6.356
10 C 0.275 3.725
11 O -0.412 6.412
12 N -0.306 5.306
13 C 0.036 3.964
14 C 0.017 3.983
15 C -0.541 4.541
16 H 0.081 0.919
17 C -0.130 4.130
18 N -0.510 5.510
19 Si 0.717 3.283
20 H -0.206 1.206
21 H -0.212 1.212
22 H -0.196 1.196
23 C -0.248 4.248
24 C -0.175 4.175
25 C -0.108 4.108
26 Cl -0.020 7.020
27 C -0.057 4.057
28 H 0.163 0.837
29 H 0.192 0.808
30 H 0.268 0.732
31 H 0.254 0.746
32 H 0.093 0.907
33 H 0.069 0.931
34 H 0.072 0.928
35 H 0.098 0.902
36 H 0.084 0.916
37 H 0.083 0.917
38 H 0.108 0.892
39 H 0.166 0.834
Dipole moment (debyes) X Y Z Total
from point charges -14.608 -3.869 11.521 19.002
hybrid contribution 0.237 -0.040 -0.703 0.743
sum -14.371 -3.909 10.818 18.407
Atomic orbital electron populations
1.81284 1.11912 1.08736 1.07191 1.25468 0.92335 0.93748 0.94002
1.15807 0.84603 1.08265 0.96353 1.21237 0.93551 0.94183 0.96760
1.21658 0.93764 1.01328 0.98392 1.17799 0.82999 0.96459 0.92688
1.43324 1.04223 1.43182 1.38256 1.20873 0.89990 0.79762 0.79781
1.90705 1.69429 1.34968 1.40534 1.19521 0.86475 0.83913 0.82547
1.90761 1.69322 1.36579 1.44540 1.45895 1.10596 1.29768 1.44390
1.21249 0.76231 1.01117 0.97846 1.19029 0.94853 0.90075 0.94304
1.20352 1.16409 1.26429 0.90914 0.91947 1.24994 0.94850 0.94253
0.98889 1.69990 1.20006 1.31085 1.29875 0.86619 0.80387 0.77523
0.83732 1.20619 1.21155 1.19554 1.23084 1.08473 0.96265 0.96950
1.22455 0.92665 1.01623 1.00755 1.20375 0.92337 1.09078 0.89022
1.98405 1.75890 1.88554 1.39107 1.20785 0.91088 0.96103 0.97757
0.83681 0.80817 0.73156 0.74612 0.90714 0.93097 0.92779 0.90199
0.91637 0.91723 0.89238 0.83433
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.42 -4.73 18.54 41.84 0.78 -3.95 16
2 C 0.26 2.33 15.33 -22.47 -0.34 1.99 16
3 C -0.05 -0.34 5.74 -106.82 -0.61 -0.95 16
4 C -0.04 -0.27 9.74 -39.21 -0.38 -0.65 16
5 C -0.13 -1.23 8.74 -39.45 -0.34 -1.57 16
6 C 0.20 1.95 6.48 -83.71 -0.54 1.40 16
7 N -0.64 -7.14 5.20 -10.25 -0.05 -7.19 16
8 C 0.51 6.99 7.72 -11.63 -0.09 6.91 16
9 O -0.48 -7.04 13.43 5.48 0.07 -6.97 16
10 C 0.50 8.12 7.88 -11.63 -0.09 8.02 16
11 O -0.53 -9.59 16.49 5.49 0.09 -9.50 16
12 N -0.66 -11.71 5.40 -60.76 -0.33 -12.04 16
13 C 0.16 3.20 5.57 -4.04 -0.02 3.17 16
14 C 0.02 0.40 1.64 -155.66 -0.26 0.14 16
15 C -0.50 -12.22 8.18 -34.43 -0.28 -12.50 16
16 H 0.06 1.50 7.82 -52.49 -0.41 1.09 16
17 C 0.07 1.88 5.42 -17.82 -0.10 1.78 16
18 N -0.87 -22.94 12.47 55.43 0.69 -22.25 16
19 Si 0.89 19.74 29.54 -169.99 -5.02 14.72 16
20 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16
21 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16
22 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16
23 C -0.21 -4.12 9.93 -26.69 -0.27 -4.39 16
24 C -0.14 -2.94 9.05 -26.70 -0.24 -3.18 16
25 C -0.08 -0.65 6.33 -39.37 -0.25 -0.90 16
26 Cl -0.05 -0.39 27.71 -51.86 -1.44 -1.83 16
27 C -0.04 -0.25 9.52 -39.17 -0.37 -0.62 16
28 H 0.15 0.81 8.06 -52.49 -0.42 0.38 16
29 H 0.17 1.86 5.48 -52.49 -0.29 1.57 16
30 H 0.43 4.44 7.14 -40.82 -0.29 4.15 16
31 H 0.42 7.34 7.51 -40.82 -0.31 7.03 16
32 H 0.07 1.69 8.14 -51.93 -0.42 1.27 16
33 H 0.05 0.98 8.07 -51.93 -0.42 0.56 16
34 H 0.26 6.66 8.32 -40.82 -0.34 6.32 16
35 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16
36 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16
37 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16
38 H 0.09 2.09 8.06 -51.93 -0.42 1.67 16
39 H 0.15 0.75 8.06 -52.49 -0.42 0.32 16
LS Contribution 368.45 15.07 5.55 5.55
Total: -1.00 -27.38 368.45 -7.66 -35.03
By element:
Atomic # 1 Polarization: 13.56 SS G_CDS: -3.81 Total: 9.75 kcal
Atomic # 6 Polarization: 2.86 SS G_CDS: -4.19 Total: -1.33 kcal
Atomic # 7 Polarization: -46.51 SS G_CDS: 1.09 Total: -45.43 kcal
Atomic # 8 Polarization: -16.63 SS G_CDS: 0.16 Total: -16.46 kcal
Atomic # 14 Polarization: 19.74 SS G_CDS: -5.02 Total: 14.72 kcal
Atomic # 17 Polarization: -0.39 SS G_CDS: -1.44 Total: -1.83 kcal
Total LS contribution 5.55 Total: 5.55 kcal
Total: -27.38 -7.66 -35.03 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000430342527.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 48.059 kcal
(2) G-P(sol) polarization free energy of solvation -27.375 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.683 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.656 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.031 kcal
(6) G-S(sol) free energy of system = (1) + (5) 13.027 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.59 seconds