Wall clock time and date at job start Wed Apr 1 2020 04:27:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39789 * 120.07033 * 111.09289 * 3 2 1 5 5 C 1.37678 * 119.94503 * 179.67637 * 4 3 2 6 6 C 1.39136 * 120.08960 * 0.57474 * 5 4 3 7 7 N 1.39408 * 119.93153 * 179.72081 * 6 5 4 8 8 C 1.34780 * 119.99424 * 21.06353 * 7 6 5 9 9 O 1.21371 * 120.00320 * 5.32999 * 8 7 6 10 10 C 1.49357 * 119.99499 * 185.33012 * 8 7 6 11 11 O 1.21357 * 120.00192 * 5.16550 * 10 8 7 12 12 N 1.34775 * 119.99849 * 185.16919 * 10 8 7 13 13 C 1.46500 * 119.99806 * 184.99775 * 12 10 8 14 14 C 1.53008 * 109.47022 * 184.49376 * 13 12 10 15 15 C 1.50708 * 115.54835 * 303.78612 * 14 13 12 16 16 H 1.07997 * 120.00198 * 92.74026 * 15 14 13 17 17 C 1.37883 * 119.99730 * 272.46785 * 15 14 13 18 18 N 1.31518 * 119.99458 * 355.77923 * 17 15 14 19 19 Si 1.86791 * 119.99901 * 175.78237 * 17 15 14 20 20 H 1.48498 * 109.47568 * 89.99752 * 19 17 15 21 21 H 1.48506 * 109.47242 * 209.99976 * 19 17 15 22 22 H 1.48504 * 109.46952 * 329.99453 * 19 17 15 23 23 C 1.52999 * 117.50113 * 89.45378 * 14 13 12 24 24 C 1.52989 * 117.49954 * 158.11601 * 14 13 12 25 25 C 1.39234 * 120.14291 * 359.44233 * 6 5 4 26 26 Cl 1.73601 * 119.97857 * 180.27300 * 25 6 5 27 27 C 1.37812 * 120.04778 * 0.25939 * 25 6 5 28 28 H 1.07996 * 120.02388 * 359.97438 * 4 3 2 29 29 H 1.08002 * 119.95584 * 180.29092 * 5 4 3 30 30 H 0.96995 * 120.00194 * 201.06002 * 7 6 5 31 31 H 0.97005 * 120.00076 * 4.98968 * 12 10 8 32 32 H 1.08997 * 109.47233 * 64.49201 * 13 12 10 33 33 H 1.08997 * 109.46958 * 304.48697 * 13 12 10 34 34 H 0.97005 * 119.98851 * 185.00659 * 18 17 15 35 35 H 1.09000 * 117.49859 * 215.00595 * 23 14 13 36 36 H 1.09000 * 117.49577 * 0.02562 * 23 14 13 37 37 H 1.08998 * 117.50235 * 359.97438 * 24 14 13 38 38 H 1.09003 * 117.50216 * 144.97219 * 24 14 13 39 39 H 1.08000 * 120.03931 * 179.97438 * 27 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2682 0.4363 -1.1287 5 6 4.6450 0.4421 -1.1235 6 6 5.3402 0.0038 -0.0008 7 7 6.7342 0.0056 -0.0012 8 6 7.4067 0.7940 -0.8630 9 8 6.8025 1.5729 -1.5711 10 6 8.8955 0.7092 -0.9466 11 8 9.4921 -0.1332 -0.3085 12 7 9.5764 1.5682 -1.7308 13 6 11.0239 1.4166 -1.8988 14 6 11.5638 2.5756 -2.7393 15 6 10.9229 2.7515 -4.0919 16 1 10.0822 3.4194 -4.2084 17 6 11.4134 2.0639 -5.1818 18 7 12.4906 1.3194 -5.0591 19 14 10.5479 2.1899 -6.8323 20 1 11.1170 3.3235 -7.6044 21 1 10.7417 0.9278 -7.5905 22 1 9.0969 2.4184 -6.6141 23 6 12.0081 3.8385 -1.9985 24 6 13.0527 2.9048 -2.6149 25 6 4.6465 -0.4313 1.1253 26 17 5.5182 -0.9707 2.5264 27 6 3.2684 -0.4338 1.1287 28 1 2.7297 0.7726 -2.0023 29 1 5.1862 0.7831 -1.9937 30 1 7.2202 -0.5605 0.6187 31 1 9.1081 2.2867 -2.1840 32 1 11.2343 0.4734 -2.4029 33 1 11.5056 1.4216 -0.9211 34 1 12.8776 0.8942 -5.8404 35 1 11.8367 4.7965 -2.4895 36 1 11.9160 3.8435 -0.9124 37 1 13.6476 2.2960 -1.9341 38 1 13.5689 3.2481 -3.5114 39 1 2.7305 -0.7717 2.0021 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000430342527.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:27:43 Heat of formation + Delta-G solvation = -2.308086 kcal Electronic energy + Delta-G solvation = -26328.755941 eV Core-core repulsion = 22263.018955 eV Total energy + Delta-G solvation = -4065.736985 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.082 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.36793 -40.74363 -39.60411 -38.47400 -37.97828 -37.35983 -36.30377 -34.97099 -33.93510 -32.12006 -31.47365 -28.80744 -27.45502 -26.12462 -24.32636 -23.82653 -22.86426 -21.49972 -21.21888 -20.26764 -19.86678 -18.86646 -17.98678 -17.67287 -17.24323 -16.78390 -16.56288 -16.30512 -16.03861 -15.77638 -15.50860 -15.24541 -15.07648 -14.90555 -14.72918 -14.43878 -14.23998 -14.01978 -13.72882 -13.63970 -13.48298 -12.96767 -12.91184 -12.81264 -12.66443 -12.43287 -12.34394 -12.15651 -11.97637 -11.83290 -11.37912 -10.96240 -10.78239 -10.43209 -10.16404 -10.05281 -9.91012 -9.38640 -8.08234 -6.22326 -0.65765 0.02045 0.30053 0.84832 1.10748 1.43708 1.48111 1.55249 1.60172 1.69840 2.07142 2.42518 2.48286 2.68106 2.75972 3.18758 3.27685 3.52046 3.58674 3.86847 3.92187 4.13717 4.22616 4.46877 4.53726 4.66537 4.70957 4.73273 4.82547 4.94039 5.00655 5.06241 5.08244 5.30964 5.33162 5.52067 5.53903 5.70843 5.76995 5.79631 6.27175 6.37998 6.39088 6.55392 6.85324 6.91713 7.48067 8.97781 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.013901 B = 0.002563 C = 0.002264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2013.811389 B =10920.484197 C =12362.757779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.456 5.456 2 C 0.285 3.715 3 C -0.039 4.039 4 C -0.024 4.024 5 C -0.139 4.139 6 C 0.183 3.817 7 N -0.634 5.634 8 C 0.522 3.478 9 O -0.494 6.494 10 C 0.499 3.501 11 O -0.550 6.550 12 N -0.662 5.662 13 C 0.173 3.827 14 C -0.003 4.003 15 C -0.506 4.506 16 H 0.062 0.938 17 C 0.030 3.970 18 N -0.903 5.903 19 Si 0.943 3.057 20 H -0.279 1.279 21 H -0.291 1.291 22 H -0.265 1.265 23 C -0.182 4.182 24 C -0.146 4.146 25 C -0.076 4.076 26 Cl -0.045 7.045 27 C -0.023 4.023 28 H 0.165 0.835 29 H 0.162 0.838 30 H 0.432 0.568 31 H 0.418 0.582 32 H 0.043 0.957 33 H 0.060 0.940 34 H 0.259 0.741 35 H 0.081 0.919 36 H 0.091 0.909 37 H 0.075 0.925 38 H 0.064 0.936 39 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.958 -3.399 12.683 19.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.132 5.132 2 C -0.030 4.030 3 C -0.044 4.044 4 C -0.045 4.045 5 C -0.159 4.159 6 C 0.085 3.915 7 N -0.279 5.279 8 C 0.305 3.695 9 O -0.368 6.368 10 C 0.279 3.721 11 O -0.429 6.429 12 N -0.311 5.311 13 C 0.049 3.951 14 C -0.004 4.004 15 C -0.544 4.544 16 H 0.080 0.920 17 C -0.172 4.172 18 N -0.540 5.540 19 Si 0.769 3.231 20 H -0.205 1.205 21 H -0.217 1.217 22 H -0.189 1.189 23 C -0.219 4.219 24 C -0.184 4.184 25 C -0.105 4.105 26 Cl -0.016 7.016 27 C -0.044 4.044 28 H 0.183 0.817 29 H 0.179 0.821 30 H 0.272 0.728 31 H 0.255 0.745 32 H 0.061 0.939 33 H 0.079 0.921 34 H 0.068 0.932 35 H 0.099 0.901 36 H 0.109 0.891 37 H 0.093 0.907 38 H 0.083 0.917 39 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -16.435 -3.653 12.610 21.035 hybrid contribution 0.742 -0.128 -0.963 1.223 sum -15.693 -3.781 11.647 19.905 Atomic orbital electron populations 1.81325 1.13126 1.10180 1.08524 1.25479 0.92225 0.92510 0.92760 1.15766 0.83772 1.08232 0.96585 1.21375 0.92774 0.92975 0.97363 1.21552 0.94445 1.01990 0.97952 1.17933 0.82087 0.97802 0.93648 1.43146 1.04968 1.42432 1.37365 1.20178 0.88501 0.80381 0.80469 1.90718 1.69095 1.35685 1.41271 1.19923 0.87811 0.82898 0.81457 1.90746 1.70222 1.36982 1.44987 1.45766 1.09757 1.30464 1.45157 1.20866 0.77813 0.98872 0.97520 1.19097 0.95037 0.92000 0.94281 1.20637 1.16050 1.25581 0.92086 0.92033 1.25620 0.95434 0.94406 1.01711 1.70095 1.21314 1.32339 1.30301 0.85782 0.79710 0.77026 0.80534 1.20527 1.21687 1.18913 1.23070 1.05557 0.95136 0.98180 1.22366 0.92702 1.02958 1.00419 1.20358 0.92670 1.08846 0.88653 1.98414 1.75939 1.88488 1.38806 1.20995 0.90525 0.94684 0.98215 0.81719 0.82128 0.72782 0.74455 0.93853 0.92138 0.93162 0.90074 0.89076 0.90692 0.91744 0.81162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -9.60 18.54 19.00 0.35 -9.25 16 2 C 0.28 4.45 15.33 88.33 1.35 5.80 16 3 C -0.04 -0.47 5.74 -21.29 -0.12 -0.59 16 4 C -0.02 -0.30 9.74 22.51 0.22 -0.08 16 5 C -0.14 -2.37 8.74 22.35 0.20 -2.17 16 6 C 0.18 3.26 6.48 38.39 0.25 3.51 16 7 N -0.63 -13.28 5.20 -304.69 -1.58 -14.87 16 8 C 0.52 13.82 7.72 87.24 0.67 14.50 16 9 O -0.49 -13.96 13.43 -3.31 -0.04 -14.00 16 10 C 0.50 16.08 7.88 87.24 0.69 16.77 16 11 O -0.55 -19.55 16.49 -3.27 -0.05 -19.61 16 12 N -0.66 -23.40 5.40 -464.50 -2.51 -25.91 16 13 C 0.17 7.00 5.57 86.38 0.48 7.48 16 14 C 0.00 -0.15 1.64 -52.93 -0.09 -0.24 16 15 C -0.51 -24.56 8.18 25.60 0.21 -24.36 16 16 H 0.06 2.93 7.82 -2.91 -0.02 2.91 16 17 C 0.03 1.50 5.42 84.66 0.46 1.95 16 18 N -0.90 -48.38 12.47 21.45 0.27 -48.11 16 19 Si 0.94 40.73 29.54 68.60 2.03 42.76 16 20 H -0.28 -11.93 7.11 99.48 0.71 -11.23 16 21 H -0.29 -12.70 7.11 99.48 0.71 -12.00 16 22 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 23 C -0.18 -6.87 9.93 30.62 0.30 -6.57 16 24 C -0.15 -6.27 9.05 30.61 0.28 -5.99 16 25 C -0.08 -1.07 6.33 22.41 0.14 -0.93 16 26 Cl -0.05 -0.64 27.71 -2.72 -0.08 -0.72 16 27 C -0.02 -0.25 9.52 22.54 0.21 -0.03 16 28 H 0.17 1.37 8.06 -2.91 -0.02 1.35 16 29 H 0.16 3.27 5.48 -2.91 -0.02 3.25 16 30 H 0.43 8.44 7.14 -92.71 -0.66 7.78 16 31 H 0.42 14.55 7.51 -92.70 -0.70 13.85 16 32 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16 33 H 0.06 2.30 8.07 -2.39 -0.02 2.28 16 34 H 0.26 13.46 8.32 -92.70 -0.77 12.69 16 35 H 0.08 3.04 8.14 -2.39 -0.02 3.02 16 36 H 0.09 2.98 8.14 -2.39 -0.02 2.96 16 37 H 0.07 3.00 8.14 -2.39 -0.02 2.98 16 38 H 0.06 3.07 8.06 -2.39 -0.02 3.05 16 39 H 0.17 1.11 8.06 -2.91 -0.02 1.09 16 Total: -1.00 -58.43 368.45 3.42 -55.01 By element: Atomic # 1 Polarization: 25.85 SS G_CDS: -0.21 Total: 25.64 kcal Atomic # 6 Polarization: 3.79 SS G_CDS: 5.26 Total: 9.05 kcal Atomic # 7 Polarization: -94.65 SS G_CDS: -3.47 Total: -98.13 kcal Atomic # 8 Polarization: -33.51 SS G_CDS: -0.10 Total: -33.61 kcal Atomic # 14 Polarization: 40.73 SS G_CDS: 2.03 Total: 42.76 kcal Atomic # 17 Polarization: -0.64 SS G_CDS: -0.08 Total: -0.72 kcal Total: -58.43 3.42 -55.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430342527.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.697 kcal (2) G-P(sol) polarization free energy of solvation -58.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds