Wall clock time and date at job start Wed Apr 1 2020 04:29:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 C 1.39712 * 120.09994 * 281.81365 * 3 2 1 5 5 C 1.37941 * 120.00493 * 180.02562 * 4 3 2 6 6 C 1.38367 * 120.22461 * 359.97438 * 5 4 3 7 7 Cl 1.73608 * 119.89709 * 179.97438 * 6 5 4 8 8 C 1.39143 * 120.20704 * 0.02562 * 6 5 4 9 9 N 1.39795 * 120.00965 * 180.02562 * 8 6 5 10 10 C 1.34770 * 120.00363 * 200.34357 * 9 8 6 11 11 O 1.21384 * 120.00161 * 5.31953 * 10 9 8 12 12 C 1.49348 * 120.00235 * 185.32277 * 10 9 8 13 13 O 1.21357 * 120.00331 * 5.16939 * 12 10 9 14 14 N 1.34776 * 120.00196 * 185.16989 * 12 10 9 15 15 C 1.46498 * 120.00298 * 184.95045 * 14 12 10 16 16 C 1.53004 * 109.47342 * 184.48678 * 15 14 12 17 17 C 1.50699 * 115.54692 * 303.78792 * 16 15 14 18 18 H 1.07997 * 120.00420 * 92.70611 * 17 16 15 19 19 C 1.37880 * 119.99741 * 272.42939 * 17 16 15 20 20 N 1.31514 * 120.00137 * 355.79660 * 19 17 16 21 21 Si 1.86803 * 119.99801 * 175.79580 * 19 17 16 22 22 H 1.48497 * 109.47194 * 60.00361 * 21 19 17 23 23 H 1.48510 * 109.46939 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.47029 * 299.99976 * 21 19 17 25 25 C 1.52997 * 117.50029 * 89.45235 * 16 15 14 26 26 C 1.52997 * 117.49852 * 158.11787 * 16 15 14 27 27 C 1.38615 * 119.98313 * 0.27662 * 8 6 5 28 28 H 1.07989 * 119.99600 * 0.02562 * 4 3 2 29 29 H 1.08004 * 119.88838 * 179.97438 * 5 4 3 30 30 H 0.97005 * 119.99638 * 20.33992 * 9 8 6 31 31 H 0.97003 * 119.99996 * 4.94843 * 14 12 10 32 32 H 1.08997 * 109.47377 * 64.48569 * 15 14 12 33 33 H 1.09003 * 109.47141 * 304.48068 * 15 14 12 34 34 H 0.97000 * 119.99975 * 185.00160 * 20 19 17 35 35 H 1.09000 * 117.50087 * 215.00392 * 25 16 15 36 36 H 1.09005 * 117.49963 * 0.03091 * 25 16 15 37 37 H 1.08996 * 117.50176 * 359.97438 * 26 16 15 38 38 H 1.09001 * 117.49567 * 144.97962 * 26 16 15 39 39 H 1.08007 * 120.10685 * 179.72143 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2688 -0.2465 1.1831 5 6 4.6482 -0.2449 1.1810 6 6 5.3426 0.0004 0.0096 7 17 7.0787 0.0011 0.0168 8 6 4.6539 0.2476 -1.1739 9 7 5.3596 0.4945 -2.3551 10 6 4.7552 1.1236 -3.3823 11 8 3.6311 1.5616 -3.2490 12 6 5.4686 1.2818 -4.6849 13 8 6.5534 0.7634 -4.8495 14 7 4.9075 2.0004 -5.6775 15 6 5.5546 2.0661 -6.9902 16 6 4.7798 3.0281 -7.8932 17 6 3.3176 2.7126 -8.0759 18 1 2.5824 3.1640 -7.4263 19 6 2.9178 1.8519 -9.0762 20 7 3.8023 1.3712 -9.9225 21 14 1.1199 1.3687 -9.2293 22 1 0.2977 2.5849 -9.4528 23 1 0.9527 0.4411 -10.3769 24 1 0.6800 0.6963 -7.9805 25 6 5.1865 4.5028 -7.8681 26 6 5.5255 3.6355 -9.0830 27 6 3.2678 0.2543 -1.1803 28 1 2.7305 -0.4388 2.0993 29 1 5.1880 -0.4358 2.0968 30 1 6.2845 0.2130 -2.4353 31 1 4.0753 2.4740 -5.5228 32 1 5.5645 1.0736 -7.4406 33 1 6.5781 2.4224 -6.8734 34 1 3.5118 0.8244 -10.6692 35 1 4.3964 5.2448 -7.9838 36 1 6.0063 4.7877 -7.2086 37 1 6.5682 3.3501 -9.2224 38 1 4.9586 3.8066 -9.9981 39 1 2.7311 0.4504 -2.0968 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430344768.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:29:30 Heat of formation + Delta-G solvation = 14.052416 kcal Electronic energy + Delta-G solvation = -26515.867342 eV Core-core repulsion = 22450.839802 eV Total energy + Delta-G solvation = -4065.027540 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.082 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.33923 -39.70995 -38.39472 -37.28866 -36.83290 -36.52577 -35.36203 -33.51448 -32.03194 -31.61703 -30.45556 -27.25823 -25.59733 -24.63808 -24.42893 -22.60921 -21.20736 -20.20343 -19.85821 -19.52689 -18.15857 -17.30252 -17.03180 -16.38418 -16.24803 -15.90858 -15.53232 -14.90040 -14.82147 -14.57422 -14.41058 -14.04812 -13.93771 -13.80933 -13.52429 -13.35960 -13.19791 -12.80864 -12.60296 -12.40470 -12.07069 -11.87754 -11.70271 -11.54908 -11.31969 -11.07337 -11.02582 -10.99533 -10.58776 -10.29128 -9.72741 -9.47332 -9.31115 -9.16121 -8.67591 -8.61765 -8.49877 -8.22910 -6.14922 -4.25968 0.09146 0.62950 1.48506 1.53673 2.15601 2.39858 2.47812 3.24646 3.25473 3.30265 3.33552 3.41231 3.43634 3.70776 4.17700 4.30478 4.49925 4.60763 4.68457 4.78027 5.11629 5.21193 5.26864 5.31557 5.53787 5.69302 5.78369 5.87798 6.19640 6.22362 6.32564 6.37858 6.56672 6.68108 6.68742 6.90308 7.03055 7.16624 7.22177 7.39532 7.49138 7.74311 7.88876 8.22880 8.32062 8.76570 9.42807 10.91569 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.011518 B = 0.002934 C = 0.002458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2430.392970 B = 9540.207054 C =11386.369955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.404 5.404 2 C 0.254 3.746 3 C 0.003 3.997 4 C -0.082 4.082 5 C -0.086 4.086 6 C -0.048 4.048 7 Cl -0.049 7.049 8 C 0.167 3.833 9 N -0.644 5.644 10 C 0.512 3.488 11 O -0.489 6.489 12 C 0.498 3.502 13 O -0.534 6.534 14 N -0.657 5.657 15 C 0.158 3.842 16 C 0.019 3.981 17 C -0.505 4.505 18 H 0.062 0.938 19 C 0.076 3.924 20 N -0.874 5.874 21 Si 0.890 3.110 22 H -0.276 1.276 23 H -0.287 1.287 24 H -0.275 1.275 25 C -0.211 4.211 26 C -0.137 4.137 27 C -0.084 4.084 28 H 0.144 0.856 29 H 0.150 0.850 30 H 0.428 0.572 31 H 0.417 0.583 32 H 0.074 0.926 33 H 0.051 0.949 34 H 0.263 0.737 35 H 0.079 0.921 36 H 0.065 0.935 37 H 0.064 0.936 38 H 0.089 0.911 39 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.736 -3.362 21.036 22.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.079 5.079 2 C -0.061 4.061 3 C -0.001 4.001 4 C -0.104 4.104 5 C -0.105 4.105 6 C -0.078 4.078 7 Cl -0.020 7.020 8 C 0.070 3.930 9 N -0.291 5.291 10 C 0.295 3.705 11 O -0.362 6.362 12 C 0.276 3.724 13 O -0.412 6.412 14 N -0.307 5.307 15 C 0.036 3.964 16 C 0.018 3.982 17 C -0.542 4.542 18 H 0.080 0.920 19 C -0.129 4.129 20 N -0.510 5.510 21 Si 0.717 3.283 22 H -0.202 1.202 23 H -0.212 1.212 24 H -0.200 1.200 25 C -0.248 4.248 26 C -0.175 4.175 27 C -0.106 4.106 28 H 0.162 0.838 29 H 0.168 0.832 30 H 0.268 0.732 31 H 0.254 0.746 32 H 0.093 0.907 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.098 0.902 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.108 0.892 39 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 4.136 -3.573 20.706 21.415 hybrid contribution -0.246 -0.258 -0.228 0.423 sum 3.890 -3.831 20.478 21.194 Atomic orbital electron populations 1.81282 1.11866 1.07841 1.06879 1.25448 0.92388 0.94185 0.94122 1.15872 0.84819 1.04678 0.94740 1.21104 0.93299 0.98724 0.97237 1.20784 0.93474 0.99487 0.96718 1.20914 0.85554 1.07577 0.93767 1.98409 1.08248 1.96870 1.98503 1.17291 0.90938 0.99724 0.85036 1.43293 1.17316 1.56640 1.11802 1.20859 0.86652 0.77544 0.85430 1.90700 1.18278 1.45153 1.82025 1.19516 0.86182 0.82047 0.84637 1.90755 1.20053 1.48593 1.81843 1.45896 1.27098 1.46410 1.11287 1.21245 0.93797 1.01680 0.79697 1.19013 0.95153 0.88096 0.95917 1.20320 0.89495 1.27241 1.17163 0.92015 1.24978 0.97338 0.95042 0.95511 1.69972 1.33355 1.33761 1.13881 0.86694 0.85148 0.78627 0.77813 1.20154 1.21222 1.19992 1.23086 1.02182 0.96333 1.03185 1.22454 0.98330 1.03274 0.93409 1.21746 0.91698 0.97446 0.99734 0.83788 0.83239 0.73166 0.74631 0.90742 0.93105 0.92718 0.90211 0.91638 0.91725 0.89243 0.80814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.40 -5.42 18.54 41.84 0.78 -4.64 16 2 C 0.25 2.79 15.33 -22.47 -0.34 2.45 16 3 C 0.00 0.03 5.73 -106.94 -0.61 -0.59 16 4 C -0.08 -0.49 9.75 -39.14 -0.38 -0.88 16 5 C -0.09 -0.49 9.80 -39.64 -0.39 -0.88 16 6 C -0.05 -0.38 6.34 -39.20 -0.25 -0.63 16 7 Cl -0.05 -0.38 27.70 -51.86 -1.44 -1.82 16 8 C 0.17 1.70 6.49 -83.75 -0.54 1.16 16 9 N -0.64 -7.46 5.22 -10.30 -0.05 -7.51 16 10 C 0.51 7.37 7.73 -11.64 -0.09 7.28 16 11 O -0.49 -7.64 13.40 5.47 0.07 -7.56 16 12 C 0.50 8.42 7.88 -11.63 -0.09 8.33 16 13 O -0.53 -9.82 16.49 5.49 0.09 -9.73 16 14 N -0.66 -12.14 5.40 -60.76 -0.33 -12.46 16 15 C 0.16 3.28 5.57 -4.04 -0.02 3.25 16 16 C 0.02 0.42 1.64 -155.66 -0.26 0.17 16 17 C -0.50 -12.55 8.18 -34.44 -0.28 -12.83 16 18 H 0.06 1.53 7.82 -52.49 -0.41 1.12 16 19 C 0.08 1.95 5.42 -17.82 -0.10 1.86 16 20 N -0.87 -23.32 12.47 55.43 0.69 -22.63 16 21 Si 0.89 20.32 29.54 -169.99 -5.02 15.30 16 22 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 23 H -0.29 -6.57 7.11 56.52 0.40 -6.16 16 24 H -0.27 -6.31 7.11 56.52 0.40 -5.90 16 25 C -0.21 -4.21 9.93 -26.69 -0.27 -4.48 16 26 C -0.14 -2.98 9.05 -26.69 -0.24 -3.22 16 27 C -0.08 -0.89 8.48 -38.96 -0.33 -1.22 16 28 H 0.14 0.51 8.06 -52.49 -0.42 0.09 16 29 H 0.15 0.47 8.06 -52.48 -0.42 0.05 16 30 H 0.43 4.58 7.13 -40.82 -0.29 4.29 16 31 H 0.42 7.65 7.51 -40.82 -0.31 7.34 16 32 H 0.07 1.72 8.14 -51.93 -0.42 1.30 16 33 H 0.05 1.00 8.07 -51.93 -0.42 0.58 16 34 H 0.26 6.80 8.32 -40.82 -0.34 6.46 16 35 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 36 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 38 H 0.09 2.12 8.06 -51.93 -0.42 1.70 16 39 H 0.17 2.21 5.43 -52.48 -0.29 1.92 16 LS Contribution 368.42 15.07 5.55 5.55 Total: -1.00 -28.35 368.42 -7.65 -36.00 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: -3.80 Total: 9.73 kcal Atomic # 6 Polarization: 3.96 SS G_CDS: -4.19 Total: -0.23 kcal Atomic # 7 Polarization: -48.33 SS G_CDS: 1.08 Total: -47.25 kcal Atomic # 8 Polarization: -17.45 SS G_CDS: 0.16 Total: -17.29 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.30 kcal Atomic # 17 Polarization: -0.38 SS G_CDS: -1.44 Total: -1.82 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -28.35 -7.65 -36.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430344768.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.056 kcal (2) G-P(sol) polarization free energy of solvation -28.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.004 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds