Wall clock time and date at job start Wed Apr 1 2020 04:29:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 C 1.39712 * 120.09994 * 281.81365 * 3 2 1 5 5 C 1.37941 * 120.00493 * 180.02562 * 4 3 2 6 6 C 1.38367 * 120.22461 * 359.97438 * 5 4 3 7 7 Cl 1.73608 * 119.89709 * 179.97438 * 6 5 4 8 8 C 1.39143 * 120.20704 * 0.02562 * 6 5 4 9 9 N 1.39795 * 120.00965 * 180.02562 * 8 6 5 10 10 C 1.34770 * 120.00363 * 200.34357 * 9 8 6 11 11 O 1.21384 * 120.00161 * 5.31953 * 10 9 8 12 12 C 1.49348 * 120.00235 * 185.32277 * 10 9 8 13 13 O 1.21357 * 120.00331 * 5.16939 * 12 10 9 14 14 N 1.34776 * 120.00196 * 185.16989 * 12 10 9 15 15 C 1.46498 * 120.00298 * 184.95045 * 14 12 10 16 16 C 1.53004 * 109.47342 * 184.48678 * 15 14 12 17 17 C 1.50699 * 115.54692 * 303.78792 * 16 15 14 18 18 H 1.07997 * 120.00420 * 92.70611 * 17 16 15 19 19 C 1.37880 * 119.99741 * 272.42939 * 17 16 15 20 20 N 1.31514 * 120.00137 * 355.79660 * 19 17 16 21 21 Si 1.86803 * 119.99801 * 175.79580 * 19 17 16 22 22 H 1.48497 * 109.47194 * 60.00361 * 21 19 17 23 23 H 1.48510 * 109.46939 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.47029 * 299.99976 * 21 19 17 25 25 C 1.52997 * 117.50029 * 89.45235 * 16 15 14 26 26 C 1.52997 * 117.49852 * 158.11787 * 16 15 14 27 27 C 1.38615 * 119.98313 * 0.27662 * 8 6 5 28 28 H 1.07989 * 119.99600 * 0.02562 * 4 3 2 29 29 H 1.08004 * 119.88838 * 179.97438 * 5 4 3 30 30 H 0.97005 * 119.99638 * 20.33992 * 9 8 6 31 31 H 0.97003 * 119.99996 * 4.94843 * 14 12 10 32 32 H 1.08997 * 109.47377 * 64.48569 * 15 14 12 33 33 H 1.09003 * 109.47141 * 304.48068 * 15 14 12 34 34 H 0.97000 * 119.99975 * 185.00160 * 20 19 17 35 35 H 1.09000 * 117.50087 * 215.00392 * 25 16 15 36 36 H 1.09005 * 117.49963 * 0.03091 * 25 16 15 37 37 H 1.08996 * 117.50176 * 359.97438 * 26 16 15 38 38 H 1.09001 * 117.49567 * 144.97962 * 26 16 15 39 39 H 1.08007 * 120.10685 * 179.72143 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2688 -0.2465 1.1831 5 6 4.6482 -0.2449 1.1810 6 6 5.3426 0.0004 0.0096 7 17 7.0787 0.0011 0.0168 8 6 4.6539 0.2476 -1.1739 9 7 5.3596 0.4945 -2.3551 10 6 4.7552 1.1236 -3.3823 11 8 3.6311 1.5616 -3.2490 12 6 5.4686 1.2818 -4.6849 13 8 6.5534 0.7634 -4.8495 14 7 4.9075 2.0004 -5.6775 15 6 5.5546 2.0661 -6.9902 16 6 4.7798 3.0281 -7.8932 17 6 3.3176 2.7126 -8.0759 18 1 2.5824 3.1640 -7.4263 19 6 2.9178 1.8519 -9.0762 20 7 3.8023 1.3712 -9.9225 21 14 1.1199 1.3687 -9.2293 22 1 0.2977 2.5849 -9.4528 23 1 0.9527 0.4411 -10.3769 24 1 0.6800 0.6963 -7.9805 25 6 5.1865 4.5028 -7.8681 26 6 5.5255 3.6355 -9.0830 27 6 3.2678 0.2543 -1.1803 28 1 2.7305 -0.4388 2.0993 29 1 5.1880 -0.4358 2.0968 30 1 6.2845 0.2130 -2.4353 31 1 4.0753 2.4740 -5.5228 32 1 5.5645 1.0736 -7.4406 33 1 6.5781 2.4224 -6.8734 34 1 3.5118 0.8244 -10.6692 35 1 4.3964 5.2448 -7.9838 36 1 6.0063 4.7877 -7.2086 37 1 6.5682 3.3501 -9.2224 38 1 4.9586 3.8066 -9.9981 39 1 2.7311 0.4504 -2.0968 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000430344768.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:29:29 Heat of formation + Delta-G solvation = -2.698830 kcal Electronic energy + Delta-G solvation = -26516.593731 eV Core-core repulsion = 22450.839802 eV Total energy + Delta-G solvation = -4065.753929 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.082 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.36968 -40.75444 -39.58017 -38.49625 -38.05129 -37.32750 -36.34859 -34.99085 -33.96717 -32.29712 -31.26531 -28.76769 -27.44978 -25.73045 -25.24257 -23.53661 -22.87638 -21.51466 -21.23477 -20.65467 -19.41876 -18.20788 -18.05980 -17.85976 -17.26437 -17.07774 -16.77862 -16.56483 -16.10751 -15.84361 -15.42743 -15.21665 -15.09796 -14.74120 -14.62827 -14.46254 -14.29895 -14.12713 -13.73044 -13.52521 -13.35497 -13.19439 -12.95950 -12.84365 -12.63773 -12.51861 -12.40516 -12.09177 -11.99585 -11.88730 -11.41699 -10.98264 -10.79248 -10.45905 -10.19070 -10.01334 -9.93194 -9.40101 -8.11650 -6.25534 -0.61909 -0.17449 0.43697 0.87270 1.10132 1.40780 1.43824 1.48738 1.51633 1.67135 2.02942 2.38917 2.44489 2.66597 2.73274 3.15414 3.27314 3.54051 3.56920 3.94491 3.98952 4.03916 4.20266 4.51381 4.56739 4.60974 4.64322 4.68418 4.91312 4.92948 5.02888 5.04207 5.12669 5.28373 5.30861 5.50538 5.51636 5.69215 5.75901 5.76371 6.26613 6.32962 6.35185 6.53840 6.81718 6.88319 7.44673 8.94209 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.011518 B = 0.002934 C = 0.002458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2430.392970 B = 9540.207054 C =11386.369955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C 0.277 3.723 3 C -0.006 4.006 4 C -0.054 4.054 5 C -0.071 4.071 6 C -0.040 4.040 7 Cl -0.044 7.044 8 C 0.143 3.857 9 N -0.631 5.631 10 C 0.519 3.481 11 O -0.505 6.505 12 C 0.500 3.500 13 O -0.548 6.548 14 N -0.663 5.663 15 C 0.173 3.827 16 C -0.003 4.003 17 C -0.509 4.509 18 H 0.059 0.941 19 C 0.033 3.967 20 N -0.901 5.901 21 Si 0.941 3.059 22 H -0.272 1.272 23 H -0.288 1.288 24 H -0.277 1.277 25 C -0.183 4.183 26 C -0.144 4.144 27 C -0.095 4.095 28 H 0.180 0.820 29 H 0.188 0.812 30 H 0.432 0.568 31 H 0.417 0.583 32 H 0.043 0.957 33 H 0.062 0.938 34 H 0.260 0.740 35 H 0.080 0.920 36 H 0.092 0.908 37 H 0.076 0.924 38 H 0.064 0.936 39 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.522 -3.484 24.255 25.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.129 5.129 2 C -0.038 4.038 3 C -0.011 4.011 4 C -0.075 4.075 5 C -0.089 4.089 6 C -0.070 4.070 7 Cl -0.015 7.015 8 C 0.048 3.952 9 N -0.278 5.278 10 C 0.302 3.698 11 O -0.380 6.380 12 C 0.280 3.720 13 O -0.428 6.428 14 N -0.313 5.313 15 C 0.050 3.950 16 C -0.004 4.004 17 C -0.547 4.547 18 H 0.077 0.923 19 C -0.169 4.169 20 N -0.538 5.538 21 Si 0.767 3.233 22 H -0.197 1.197 23 H -0.213 1.213 24 H -0.202 1.202 25 C -0.220 4.220 26 C -0.182 4.182 27 C -0.118 4.118 28 H 0.197 0.803 29 H 0.205 0.795 30 H 0.273 0.727 31 H 0.254 0.746 32 H 0.061 0.939 33 H 0.080 0.920 34 H 0.069 0.931 35 H 0.098 0.902 36 H 0.110 0.890 37 H 0.095 0.905 38 H 0.083 0.917 39 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 4.927 -3.703 23.967 24.747 hybrid contribution -0.410 -0.244 -1.093 1.192 sum 4.518 -3.947 22.875 23.648 Atomic orbital electron populations 1.81300 1.13313 1.09816 1.08456 1.25729 0.92654 0.92710 0.92686 1.15896 0.83636 1.06117 0.95405 1.21503 0.93436 0.95444 0.97093 1.21226 0.93302 0.97375 0.97038 1.21081 0.85874 1.06413 0.93606 1.98422 1.07865 1.96763 1.98467 1.17334 0.90796 1.02017 0.85102 1.43097 1.17339 1.55652 1.11690 1.20216 0.86239 0.78295 0.85095 1.90719 1.18733 1.46318 1.82191 1.19905 0.85891 0.80914 0.85303 1.90737 1.20782 1.48828 1.82414 1.45789 1.27227 1.47297 1.10985 1.20873 0.94300 0.99494 0.80354 1.19067 0.94262 0.90125 0.96958 1.20604 0.90995 1.26547 1.16506 0.92336 1.25567 1.00211 0.95412 0.95675 1.70068 1.34571 1.34734 1.14420 0.85892 0.81792 0.78243 0.77359 1.19719 1.21339 1.20234 1.23073 1.02467 0.94675 1.01766 1.22367 0.98530 1.04505 0.92812 1.21488 0.92043 0.98692 0.99557 0.80279 0.79494 0.72695 0.74613 0.93892 0.91978 0.93065 0.90171 0.88997 0.90548 0.91705 0.83399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -12.09 18.54 19.00 0.35 -11.74 16 2 C 0.28 5.84 15.33 88.33 1.35 7.19 16 3 C -0.01 -0.10 5.73 -21.37 -0.12 -0.22 16 4 C -0.05 -0.42 9.75 22.56 0.22 -0.20 16 5 C -0.07 -0.49 9.80 22.23 0.22 -0.27 16 6 C -0.04 -0.52 6.34 22.52 0.14 -0.37 16 7 Cl -0.04 -0.57 27.70 -2.72 -0.08 -0.64 16 8 C 0.14 2.72 6.49 38.18 0.25 2.97 16 9 N -0.63 -14.19 5.22 -304.86 -1.59 -15.78 16 10 C 0.52 14.98 7.73 87.24 0.67 15.66 16 11 O -0.51 -16.06 13.40 -3.35 -0.04 -16.11 16 12 C 0.50 17.02 7.88 87.24 0.69 17.70 16 13 O -0.55 -20.15 16.49 -3.27 -0.05 -20.20 16 14 N -0.66 -24.73 5.40 -464.52 -2.51 -27.24 16 15 C 0.17 7.24 5.57 86.38 0.48 7.72 16 16 C 0.00 -0.15 1.64 -52.93 -0.09 -0.24 16 17 C -0.51 -25.60 8.18 25.60 0.21 -25.39 16 18 H 0.06 2.91 7.82 -2.91 -0.02 2.89 16 19 C 0.03 1.71 5.42 84.66 0.46 2.17 16 20 N -0.90 -49.19 12.47 21.45 0.27 -48.92 16 21 Si 0.94 42.36 29.54 68.60 2.03 44.38 16 22 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 23 H -0.29 -12.91 7.11 99.48 0.71 -12.20 16 24 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 25 C -0.18 -7.08 9.93 30.62 0.30 -6.78 16 26 C -0.14 -6.29 9.05 30.62 0.28 -6.01 16 27 C -0.09 -1.96 8.48 22.67 0.19 -1.77 16 28 H 0.18 0.26 8.06 -2.92 -0.02 0.23 16 29 H 0.19 0.02 8.06 -2.91 -0.02 0.00 16 30 H 0.43 8.84 7.13 -92.70 -0.66 8.18 16 31 H 0.42 15.51 7.51 -92.71 -0.70 14.81 16 32 H 0.04 2.05 8.14 -2.39 -0.02 2.03 16 33 H 0.06 2.42 8.07 -2.39 -0.02 2.40 16 34 H 0.26 13.79 8.32 -92.71 -0.77 13.02 16 35 H 0.08 3.10 8.14 -2.39 -0.02 3.08 16 36 H 0.09 3.09 8.14 -2.38 -0.02 3.07 16 37 H 0.08 3.10 8.14 -2.39 -0.02 3.08 16 38 H 0.06 3.13 8.06 -2.39 -0.02 3.11 16 39 H 0.15 3.89 5.43 -2.91 -0.02 3.87 16 Total: -1.00 -62.96 368.42 3.42 -59.54 By element: Atomic # 1 Polarization: 24.78 SS G_CDS: -0.21 Total: 24.57 kcal Atomic # 6 Polarization: 6.89 SS G_CDS: 5.26 Total: 12.15 kcal Atomic # 7 Polarization: -100.21 SS G_CDS: -3.48 Total: -103.69 kcal Atomic # 8 Polarization: -36.21 SS G_CDS: -0.10 Total: -36.31 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 2.03 Total: 44.38 kcal Atomic # 17 Polarization: -0.57 SS G_CDS: -0.08 Total: -0.64 kcal Total: -62.96 3.42 -59.54 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430344768.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.840 kcal (2) G-P(sol) polarization free energy of solvation -62.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds