Wall clock time and date at job start Wed Apr 1 2020 05:02:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47157 * 2 1 4 4 H 1.08999 * 109.47272 * 54.38524 * 3 2 1 5 5 C 1.53002 * 109.47198 * 174.38490 * 3 2 1 6 6 O 1.42900 * 109.46964 * 54.99764 * 5 3 2 7 7 C 1.42900 * 113.99957 * 180.02562 * 6 5 3 8 8 N 1.46500 * 109.47072 * 294.38266 * 3 2 1 9 9 S 1.65604 * 119.99905 * 146.75631 * 8 3 2 10 10 O 1.42099 * 106.40398 * 179.26045 * 9 8 3 11 11 O 1.42101 * 106.40277 * 46.33948 * 9 8 3 12 12 C 1.76202 * 107.21756 * 292.80187 * 9 8 3 13 13 C 1.38636 * 119.75303 * 114.14161 * 12 9 8 14 14 C 1.37610 * 120.25721 * 179.76351 * 13 12 9 15 15 C 1.40738 * 119.77228 * 0.50699 * 14 13 12 16 16 C 1.41396 * 120.23723 * 179.76676 * 15 14 13 17 17 H 1.08007 * 120.00173 * 26.81772 * 16 15 14 18 18 C 1.39942 * 119.99989 * 206.81365 * 16 15 14 19 19 N 1.30821 * 120.00153 * 17.73341 * 18 16 15 20 20 Si 1.86802 * 119.99997 * 197.72632 * 18 16 15 21 21 H 1.48508 * 109.46730 * 60.00346 * 20 18 16 22 22 H 1.48493 * 109.47383 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47256 * 300.00339 * 20 18 16 24 24 C 1.40674 * 119.52493 * 359.74609 * 15 14 13 25 25 C 1.37753 * 119.73310 * 0.02562 * 24 15 14 26 26 Cl 1.73602 * 119.89103 * 179.97438 * 25 24 15 27 27 H 1.08996 * 109.47078 * 66.50493 * 1 2 3 28 28 H 1.08999 * 109.47571 * 186.50941 * 1 2 3 29 29 H 1.09001 * 109.47301 * 306.50788 * 1 2 3 30 30 H 1.08994 * 109.46992 * 239.99919 * 2 1 3 31 31 H 1.09002 * 109.46775 * 120.00125 * 2 1 3 32 32 H 1.09002 * 109.47128 * 174.99852 * 5 3 2 33 33 H 1.09007 * 109.46900 * 294.99869 * 5 3 2 34 34 H 1.08997 * 109.47233 * 59.99852 * 7 6 5 35 35 H 1.09001 * 109.47375 * 180.02562 * 7 6 5 36 36 H 1.09004 * 109.47226 * 300.00143 * 7 6 5 37 37 H 0.96998 * 120.00128 * 326.75755 * 8 3 2 38 38 H 1.07998 * 119.87105 * 359.97438 * 13 12 9 39 39 H 1.08007 * 120.11179 * 180.23253 * 14 13 12 40 40 H 0.96998 * 120.00406 * 180.02562 * 19 18 16 41 41 H 1.08005 * 120.13270 * 180.02562 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5969 1.9845 0.8354 5 6 3.5635 1.4448 0.1411 6 8 4.1384 0.6371 -0.8880 7 6 5.5653 0.5711 -0.8462 8 7 1.6652 2.0929 -1.2580 9 16 1.3108 3.7105 -1.2803 10 8 1.0075 4.0363 -2.6298 11 8 2.3350 4.3559 -0.5362 12 6 -0.1807 3.9302 -0.3682 13 6 -0.1609 4.6409 0.8220 14 6 -1.3204 4.8229 1.5403 15 6 -2.5281 4.2756 1.0683 16 6 -3.7244 4.4525 1.8010 17 1 -3.8419 5.3124 2.4438 18 6 -4.7563 3.5133 1.6931 19 7 -4.5091 2.3222 1.2120 20 14 -6.4868 3.9605 2.2363 21 1 -6.9710 5.1184 1.4424 22 1 -7.3885 2.8005 2.0212 23 1 -6.4763 4.3182 3.6775 24 6 -2.5365 3.5517 -0.1378 25 6 -1.3649 3.3856 -0.8432 26 17 -1.3705 2.4924 -2.3318 27 1 -0.3633 0.4097 -0.9424 28 1 -0.3634 -1.0210 0.1165 29 1 -0.3634 0.6114 0.8260 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 3.9351 2.4656 0.0521 33 1 3.8387 1.0416 1.1158 34 1 5.8816 0.1496 0.1079 35 1 5.9238 -0.0600 -1.6593 36 1 5.9788 1.5737 -0.9554 37 1 1.6246 1.5762 -2.0779 38 1 0.7676 5.0561 1.1852 39 1 -1.3030 5.3802 2.4654 40 1 -5.2243 1.6713 1.1369 41 1 -3.4578 3.1278 -0.5094 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451217614.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:02:30 Heat of formation + Delta-G solvation = -127.602411 kcal Electronic energy + Delta-G solvation = -27264.282530 eV Core-core repulsion = 23296.263575 eV Total energy + Delta-G solvation = -3968.018955 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.079 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -38.37763 -37.86607 -36.48101 -35.87530 -35.56489 -35.08241 -34.09783 -31.33398 -30.33624 -29.48343 -28.76797 -26.11929 -26.01691 -23.27965 -21.78451 -21.35587 -20.73504 -18.96763 -17.83308 -17.26312 -16.60817 -16.37157 -15.86799 -15.68690 -15.31789 -15.13533 -14.54489 -14.45171 -13.78951 -13.73941 -13.41579 -12.98055 -12.74571 -12.59887 -12.47823 -12.36623 -12.34670 -11.66863 -11.54386 -11.51831 -11.37849 -11.33961 -11.28361 -11.18038 -11.09335 -10.72410 -10.61065 -10.56598 -10.40184 -10.31107 -10.07333 -9.66518 -9.59073 -9.57393 -9.00516 -8.10984 -7.72970 -7.27292 -4.95389 1.26541 2.04017 2.63719 2.81400 2.84484 2.88203 3.00516 3.58116 3.67860 3.87144 4.08523 4.50915 4.88916 5.06313 5.14823 5.22885 5.29277 5.33540 5.39039 5.45380 5.58668 5.63763 5.73849 5.92364 5.96651 6.10114 6.19625 6.29306 6.39276 6.54014 6.58788 6.67110 6.76176 6.78803 6.98654 7.15753 7.19789 7.31105 7.46998 7.55858 7.75083 8.06574 8.32983 8.39315 9.64170 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.016634 B = 0.003788 C = 0.003656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.906661 B = 7390.820542 C = 7657.055891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.118 4.118 3 C 0.165 3.835 4 H 0.099 0.901 5 C 0.040 3.960 6 O -0.383 6.383 7 C 0.031 3.969 8 N -1.107 6.107 9 S 2.695 3.305 10 O -0.970 6.970 11 O -0.988 6.988 12 C -0.793 4.793 13 C 0.008 3.992 14 C -0.236 4.236 15 C 0.145 3.855 16 C -0.428 4.428 17 H 0.092 0.908 18 C 0.071 3.929 19 N -0.758 5.758 20 Si 0.919 3.081 21 H -0.258 1.258 22 H -0.273 1.273 23 H -0.260 1.260 24 C -0.167 4.167 25 C 0.080 3.920 26 Cl -0.100 7.100 27 H 0.064 0.936 28 H 0.048 0.952 29 H 0.060 0.940 30 H 0.073 0.927 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.055 0.945 34 H 0.037 0.963 35 H 0.082 0.918 36 H 0.039 0.961 37 H 0.414 0.586 38 H 0.117 0.883 39 H 0.106 0.894 40 H 0.293 0.707 41 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.941 -5.430 0.319 9.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.157 4.157 3 C 0.057 3.943 4 H 0.117 0.883 5 C -0.038 4.038 6 O -0.302 6.302 7 C -0.066 4.066 8 N -0.864 5.864 9 S 2.791 3.209 10 O -0.961 6.961 11 O -0.978 6.978 12 C -0.887 4.887 13 C -0.012 4.012 14 C -0.256 4.256 15 C 0.141 3.859 16 C -0.454 4.454 17 H 0.110 0.890 18 C -0.152 4.152 19 N -0.380 5.380 20 Si 0.741 3.259 21 H -0.182 1.182 22 H -0.198 1.198 23 H -0.185 1.185 24 C -0.188 4.188 25 C 0.052 3.948 26 Cl -0.071 7.071 27 H 0.083 0.917 28 H 0.068 0.932 29 H 0.079 0.921 30 H 0.092 0.908 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.073 0.927 34 H 0.056 0.944 35 H 0.100 0.900 36 H 0.058 0.942 37 H 0.248 0.752 38 H 0.134 0.866 39 H 0.124 0.876 40 H 0.104 0.896 41 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 8.255 -5.116 -0.262 9.715 hybrid contribution -1.231 -0.362 0.468 1.366 sum 7.024 -5.477 0.207 8.910 Atomic orbital electron populations 1.21839 0.94678 1.01305 1.03604 1.21670 0.96654 0.94738 1.02632 1.20785 0.91524 0.95515 0.86504 0.88312 1.23264 0.94608 0.95520 0.90430 1.87869 1.19276 1.70398 1.52616 1.22712 0.81845 1.00814 1.01248 1.55596 1.85370 1.29751 1.15670 1.01297 0.74125 0.71935 0.73549 1.93549 1.85731 1.81912 1.34894 1.93461 1.56802 1.73639 1.73940 1.29123 1.15660 1.27286 1.16665 1.20205 0.97938 0.92394 0.90655 1.21120 0.92496 1.10530 1.01478 1.17694 0.92078 0.86795 0.89325 1.19931 0.97468 1.06756 1.21273 0.88976 1.26157 1.02003 0.93910 0.93141 1.69778 1.35735 1.03267 1.29175 0.86162 0.79610 0.79654 0.80429 1.18231 1.19781 1.18453 1.21187 0.95954 1.05963 0.95652 1.19990 0.94721 0.94362 0.85728 1.98318 1.98697 1.74624 1.35499 0.91673 0.93241 0.92121 0.90845 0.91459 0.91588 0.92681 0.94392 0.89982 0.94187 0.75215 0.86551 0.87595 0.89593 0.85266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.31 9.73 37.16 0.36 -1.95 16 2 C -0.12 -1.52 5.22 -26.73 -0.14 -1.66 16 3 C 0.16 2.35 2.54 -67.93 -0.17 2.18 16 4 H 0.10 1.45 7.99 -51.93 -0.42 1.04 16 5 C 0.04 0.53 5.77 37.16 0.21 0.74 16 6 O -0.38 -4.98 9.88 -35.23 -0.35 -5.33 16 7 C 0.03 0.30 11.01 101.05 1.11 1.42 16 8 N -1.11 -17.73 4.84 -4.89 -0.02 -17.75 16 9 S 2.70 52.75 4.99 -107.50 -0.54 52.21 16 10 O -0.97 -21.25 16.42 -57.17 -0.94 -22.19 16 11 O -0.99 -20.34 15.93 -57.17 -0.91 -21.25 16 12 C -0.79 -16.95 5.92 -39.25 -0.23 -17.19 16 13 C 0.01 0.17 9.52 -39.66 -0.38 -0.20 16 14 C -0.24 -5.20 9.79 -38.87 -0.38 -5.58 16 15 C 0.15 3.46 5.54 -106.83 -0.59 2.86 16 16 C -0.43 -9.84 9.04 -37.74 -0.34 -10.18 16 17 H 0.09 1.99 7.91 -52.48 -0.41 1.57 16 18 C 0.07 1.55 5.12 -17.34 -0.09 1.46 16 19 N -0.76 -17.01 11.11 55.55 0.62 -16.39 16 20 Si 0.92 16.21 29.59 -169.99 -5.03 11.18 16 21 H -0.26 -4.59 7.11 56.52 0.40 -4.19 16 22 H -0.27 -4.72 7.11 56.52 0.40 -4.32 16 23 H -0.26 -4.53 7.11 56.52 0.40 -4.13 16 24 C -0.17 -3.96 8.45 -38.84 -0.33 -4.29 16 25 C 0.08 1.79 6.29 -39.58 -0.25 1.54 16 26 Cl -0.10 -2.01 25.32 -51.86 -1.31 -3.32 16 27 H 0.06 1.03 6.81 -51.93 -0.35 0.68 16 28 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 30 H 0.07 0.93 7.75 -51.93 -0.40 0.52 16 31 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.07 0.95 7.40 -51.93 -0.38 0.57 16 33 H 0.06 0.60 8.14 -51.92 -0.42 0.18 16 34 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.04 0.39 8.14 -51.93 -0.42 -0.04 16 37 H 0.41 6.13 8.82 -34.47 -0.30 5.83 16 38 H 0.12 2.24 7.31 -52.49 -0.38 1.85 16 39 H 0.11 2.13 8.06 -52.48 -0.42 1.70 16 40 H 0.29 5.94 8.30 -40.82 -0.34 5.60 16 41 H 0.13 3.15 6.34 -52.48 -0.33 2.82 16 LS Contribution 367.05 15.07 5.53 5.53 Total: -1.00 -27.50 367.05 -9.67 -37.17 By element: Atomic # 1 Polarization: 16.51 SS G_CDS: -5.51 Total: 11.00 kcal Atomic # 6 Polarization: -29.64 SS G_CDS: -1.21 Total: -30.86 kcal Atomic # 7 Polarization: -34.74 SS G_CDS: 0.59 Total: -34.14 kcal Atomic # 8 Polarization: -46.58 SS G_CDS: -2.20 Total: -48.77 kcal Atomic # 14 Polarization: 16.21 SS G_CDS: -5.03 Total: 11.18 kcal Atomic # 16 Polarization: 52.75 SS G_CDS: -0.54 Total: 52.21 kcal Atomic # 17 Polarization: -2.01 SS G_CDS: -1.31 Total: -3.32 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -27.50 -9.67 -37.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451217614.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.428 kcal (2) G-P(sol) polarization free energy of solvation -27.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds