Wall clock time and date at job start Wed Apr 1 2020 05:02:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47157 * 2 1 4 4 H 1.08999 * 109.47272 * 54.38524 * 3 2 1 5 5 C 1.53002 * 109.47198 * 174.38490 * 3 2 1 6 6 O 1.42900 * 109.46964 * 54.99764 * 5 3 2 7 7 C 1.42900 * 113.99957 * 180.02562 * 6 5 3 8 8 N 1.46500 * 109.47072 * 294.38266 * 3 2 1 9 9 S 1.65604 * 119.99905 * 146.75631 * 8 3 2 10 10 O 1.42099 * 106.40398 * 179.26045 * 9 8 3 11 11 O 1.42101 * 106.40277 * 46.33948 * 9 8 3 12 12 C 1.76202 * 107.21756 * 292.80187 * 9 8 3 13 13 C 1.38636 * 119.75303 * 114.14161 * 12 9 8 14 14 C 1.37610 * 120.25721 * 179.76351 * 13 12 9 15 15 C 1.40738 * 119.77228 * 0.50699 * 14 13 12 16 16 C 1.41396 * 120.23723 * 179.76676 * 15 14 13 17 17 H 1.08007 * 120.00173 * 26.81772 * 16 15 14 18 18 C 1.39942 * 119.99989 * 206.81365 * 16 15 14 19 19 N 1.30821 * 120.00153 * 17.73341 * 18 16 15 20 20 Si 1.86802 * 119.99997 * 197.72632 * 18 16 15 21 21 H 1.48508 * 109.46730 * 60.00346 * 20 18 16 22 22 H 1.48493 * 109.47383 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47256 * 300.00339 * 20 18 16 24 24 C 1.40674 * 119.52493 * 359.74609 * 15 14 13 25 25 C 1.37753 * 119.73310 * 0.02562 * 24 15 14 26 26 Cl 1.73602 * 119.89103 * 179.97438 * 25 24 15 27 27 H 1.08996 * 109.47078 * 66.50493 * 1 2 3 28 28 H 1.08999 * 109.47571 * 186.50941 * 1 2 3 29 29 H 1.09001 * 109.47301 * 306.50788 * 1 2 3 30 30 H 1.08994 * 109.46992 * 239.99919 * 2 1 3 31 31 H 1.09002 * 109.46775 * 120.00125 * 2 1 3 32 32 H 1.09002 * 109.47128 * 174.99852 * 5 3 2 33 33 H 1.09007 * 109.46900 * 294.99869 * 5 3 2 34 34 H 1.08997 * 109.47233 * 59.99852 * 7 6 5 35 35 H 1.09001 * 109.47375 * 180.02562 * 7 6 5 36 36 H 1.09004 * 109.47226 * 300.00143 * 7 6 5 37 37 H 0.96998 * 120.00128 * 326.75755 * 8 3 2 38 38 H 1.07998 * 119.87105 * 359.97438 * 13 12 9 39 39 H 1.08007 * 120.11179 * 180.23253 * 14 13 12 40 40 H 0.96998 * 120.00406 * 180.02562 * 19 18 16 41 41 H 1.08005 * 120.13270 * 180.02562 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5969 1.9845 0.8354 5 6 3.5635 1.4448 0.1411 6 8 4.1384 0.6371 -0.8880 7 6 5.5653 0.5711 -0.8462 8 7 1.6652 2.0929 -1.2580 9 16 1.3108 3.7105 -1.2803 10 8 1.0075 4.0363 -2.6298 11 8 2.3350 4.3559 -0.5362 12 6 -0.1807 3.9302 -0.3682 13 6 -0.1609 4.6409 0.8220 14 6 -1.3204 4.8229 1.5403 15 6 -2.5281 4.2756 1.0683 16 6 -3.7244 4.4525 1.8010 17 1 -3.8419 5.3124 2.4438 18 6 -4.7563 3.5133 1.6931 19 7 -4.5091 2.3222 1.2120 20 14 -6.4868 3.9605 2.2363 21 1 -6.9710 5.1184 1.4424 22 1 -7.3885 2.8005 2.0212 23 1 -6.4763 4.3182 3.6775 24 6 -2.5365 3.5517 -0.1378 25 6 -1.3649 3.3856 -0.8432 26 17 -1.3705 2.4924 -2.3318 27 1 -0.3633 0.4097 -0.9424 28 1 -0.3634 -1.0210 0.1165 29 1 -0.3634 0.6114 0.8260 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 3.9351 2.4656 0.0521 33 1 3.8387 1.0416 1.1158 34 1 5.8816 0.1496 0.1079 35 1 5.9238 -0.0600 -1.6593 36 1 5.9788 1.5737 -0.9554 37 1 1.6246 1.5762 -2.0779 38 1 0.7676 5.0561 1.1852 39 1 -1.3030 5.3802 2.4654 40 1 -5.2243 1.6713 1.1369 41 1 -3.4578 3.1278 -0.5094 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451217614.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:02:29 Heat of formation + Delta-G solvation = -144.686795 kcal Electronic energy + Delta-G solvation = -27265.023364 eV Core-core repulsion = 23296.263575 eV Total energy + Delta-G solvation = -3968.759789 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.079 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.59977 -39.39147 -38.10915 -37.31858 -36.91637 -36.74332 -35.77149 -32.57306 -32.05062 -31.21191 -29.82899 -27.72895 -26.97602 -24.37457 -23.49474 -23.05712 -21.89943 -20.47205 -19.54079 -18.77225 -18.20312 -17.57855 -17.25971 -16.87935 -16.49736 -16.31027 -16.10970 -15.81477 -15.37264 -15.05656 -15.01073 -14.44645 -14.21343 -14.04521 -13.95485 -13.58695 -13.43299 -13.25787 -13.07769 -13.03975 -12.93915 -12.83782 -12.70291 -12.35443 -12.24911 -12.21776 -12.11271 -12.03229 -11.79237 -11.69511 -11.61009 -11.28471 -11.19629 -10.51296 -10.32154 -9.84867 -9.46229 -8.91161 -6.70016 -0.30498 0.33718 0.88274 1.27737 1.37233 1.44542 1.50927 2.10592 2.21753 2.45405 2.90691 2.94648 3.38674 3.66142 3.78547 4.05481 4.21598 4.26381 4.37491 4.48222 4.55731 4.64101 4.67696 4.71734 4.83626 4.84769 4.90632 4.93747 4.98012 5.05795 5.08498 5.19564 5.26205 5.42624 5.45204 5.56163 5.57268 5.81796 6.03006 6.20760 6.29995 6.33699 6.60515 6.65842 8.03361 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.016634 B = 0.003788 C = 0.003656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.906661 B = 7390.820542 C = 7657.055891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.107 4.107 3 C 0.156 3.844 4 H 0.093 0.907 5 C 0.044 3.956 6 O -0.398 6.398 7 C 0.023 3.977 8 N -1.097 6.097 9 S 2.715 3.285 10 O -0.994 6.994 11 O -0.996 6.996 12 C -0.802 4.802 13 C 0.006 3.994 14 C -0.247 4.247 15 C 0.120 3.880 16 C -0.453 4.453 17 H 0.099 0.901 18 C 0.037 3.963 19 N -0.785 5.785 20 Si 0.988 3.012 21 H -0.260 1.260 22 H -0.266 1.266 23 H -0.253 1.253 24 C -0.188 4.188 25 C 0.076 3.924 26 Cl -0.085 7.085 27 H 0.050 0.950 28 H 0.061 0.939 29 H 0.036 0.964 30 H 0.081 0.919 31 H 0.090 0.910 32 H 0.051 0.949 33 H 0.081 0.919 34 H 0.054 0.946 35 H 0.097 0.903 36 H 0.038 0.962 37 H 0.421 0.579 38 H 0.136 0.864 39 H 0.121 0.879 40 H 0.300 0.700 41 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.561 -6.309 0.913 10.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.146 4.146 3 C 0.048 3.952 4 H 0.111 0.889 5 C -0.035 4.035 6 O -0.318 6.318 7 C -0.073 4.073 8 N -0.857 5.857 9 S 2.809 3.191 10 O -0.985 6.985 11 O -0.986 6.986 12 C -0.895 4.895 13 C -0.014 4.014 14 C -0.268 4.268 15 C 0.116 3.884 16 C -0.480 4.480 17 H 0.117 0.883 18 C -0.184 4.184 19 N -0.407 5.407 20 Si 0.807 3.193 21 H -0.184 1.184 22 H -0.190 1.190 23 H -0.177 1.177 24 C -0.209 4.209 25 C 0.048 3.952 26 Cl -0.056 7.056 27 H 0.069 0.931 28 H 0.081 0.919 29 H 0.056 0.944 30 H 0.099 0.901 31 H 0.108 0.892 32 H 0.069 0.931 33 H 0.099 0.901 34 H 0.073 0.927 35 H 0.115 0.885 36 H 0.057 0.943 37 H 0.257 0.743 38 H 0.153 0.847 39 H 0.139 0.861 40 H 0.112 0.888 41 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 8.881 -5.995 0.336 10.720 hybrid contribution -1.310 -0.164 0.239 1.342 sum 7.571 -6.158 0.575 9.776 Atomic orbital electron populations 1.21812 0.96254 1.01467 1.01769 1.21610 0.94973 0.93927 1.04082 1.21027 0.92833 0.96084 0.85222 0.88950 1.23168 0.93339 0.95124 0.91858 1.87836 1.21045 1.70164 1.52724 1.22918 0.80205 1.01281 1.02887 1.55301 1.84893 1.28570 1.16889 1.00661 0.73282 0.72633 0.72509 1.93510 1.85932 1.82989 1.36057 1.93446 1.56594 1.74559 1.74035 1.29482 1.16395 1.26870 1.16764 1.20464 0.98453 0.91993 0.90519 1.21344 0.92344 1.10793 1.02280 1.18026 0.93171 0.87442 0.89740 1.20242 0.98202 1.07553 1.21962 0.88280 1.26962 1.05328 0.93375 0.92766 1.69814 1.37180 1.04145 1.29578 0.85131 0.74707 0.79299 0.80128 1.18388 1.18971 1.17664 1.21141 0.95997 1.07355 0.96443 1.20105 0.94675 0.94194 0.86213 1.98310 1.98687 1.74225 1.34412 0.93139 0.91947 0.94432 0.90072 0.89181 0.93120 0.90075 0.92718 0.88464 0.94346 0.74338 0.84674 0.86100 0.88829 0.86632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.48 9.73 71.98 0.70 -3.78 16 2 C -0.11 -2.55 5.22 30.59 0.16 -2.39 16 3 C 0.16 4.22 2.54 44.99 0.11 4.34 16 4 H 0.09 2.64 7.99 -2.39 -0.02 2.62 16 5 C 0.04 1.05 5.77 71.98 0.42 1.47 16 6 O -0.40 -9.43 9.88 -148.98 -1.47 -10.90 16 7 C 0.02 0.40 11.01 113.37 1.25 1.65 16 8 N -1.10 -34.16 4.84 -169.39 -0.82 -34.98 16 9 S 2.72 105.08 4.99 -56.49 -0.28 104.79 16 10 O -0.99 -43.24 16.42 -128.00 -2.10 -45.35 16 11 O -1.00 -40.19 15.93 -128.00 -2.04 -42.23 16 12 C -0.80 -34.47 5.92 22.48 0.13 -34.33 16 13 C 0.01 0.24 9.52 22.22 0.21 0.45 16 14 C -0.25 -11.03 9.79 22.73 0.22 -10.80 16 15 C 0.12 5.85 5.54 -21.30 -0.12 5.74 16 16 C -0.45 -21.18 9.04 23.46 0.21 -20.96 16 17 H 0.10 4.31 7.91 -2.91 -0.02 4.29 16 18 C 0.04 1.60 5.12 85.26 0.44 2.04 16 19 N -0.79 -35.75 11.11 21.83 0.24 -35.50 16 20 Si 0.99 32.77 29.59 68.60 2.03 34.80 16 21 H -0.26 -8.62 7.11 99.48 0.71 -7.91 16 22 H -0.27 -8.39 7.11 99.48 0.71 -7.69 16 23 H -0.25 -8.04 7.11 99.48 0.71 -7.33 16 24 C -0.19 -9.22 8.45 22.75 0.19 -9.02 16 25 C 0.08 3.46 6.29 22.27 0.14 3.60 16 26 Cl -0.09 -3.44 25.32 -2.72 -0.07 -3.51 16 27 H 0.05 1.58 6.81 -2.39 -0.02 1.56 16 28 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 29 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.08 1.84 7.75 -2.39 -0.02 1.83 16 31 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.05 1.38 7.40 -2.39 -0.02 1.37 16 33 H 0.08 1.54 8.14 -2.38 -0.02 1.52 16 34 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.04 0.67 8.14 -2.38 -0.02 0.65 16 37 H 0.42 12.04 8.82 -96.75 -0.85 11.19 16 38 H 0.14 5.10 7.31 -2.91 -0.02 5.08 16 39 H 0.12 4.86 8.06 -2.91 -0.02 4.84 16 40 H 0.30 12.27 8.30 -92.71 -0.77 11.50 16 41 H 0.12 5.86 6.34 -2.91 -0.02 5.84 16 Total: -1.00 -58.68 367.05 -0.24 -58.91 By element: Atomic # 1 Polarization: 35.77 SS G_CDS: 0.20 Total: 35.97 kcal Atomic # 6 Polarization: -66.08 SS G_CDS: 4.07 Total: -62.01 kcal Atomic # 7 Polarization: -69.90 SS G_CDS: -0.58 Total: -70.48 kcal Atomic # 8 Polarization: -92.86 SS G_CDS: -5.61 Total: -98.47 kcal Atomic # 14 Polarization: 32.77 SS G_CDS: 2.03 Total: 34.80 kcal Atomic # 16 Polarization: 105.08 SS G_CDS: -0.28 Total: 104.79 kcal Atomic # 17 Polarization: -3.44 SS G_CDS: -0.07 Total: -3.51 kcal Total: -58.68 -0.24 -58.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451217614.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.774 kcal (2) G-P(sol) polarization free energy of solvation -58.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds