Wall clock time and date at job start Wed Apr 1 2020 04:58:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.46848 * 2 1 4 4 C 1.52995 * 109.47368 * 119.99636 * 2 1 3 5 5 H 1.09002 * 109.47238 * 300.00434 * 4 2 1 6 6 O 1.42909 * 109.46951 * 60.00063 * 4 2 1 7 7 C 1.52995 * 109.47519 * 180.02562 * 4 2 1 8 8 N 1.46501 * 109.47260 * 180.02562 * 7 4 2 9 9 S 1.65600 * 120.00381 * 165.00068 * 8 7 4 10 10 O 1.42105 * 106.40076 * 311.45657 * 9 8 7 11 11 O 1.42092 * 106.40546 * 178.53952 * 9 8 7 12 12 C 1.76199 * 107.21920 * 64.99430 * 9 8 7 13 13 C 1.38630 * 119.75693 * 115.00426 * 12 9 8 14 14 C 1.37601 * 120.26310 * 180.27486 * 13 12 9 15 15 C 1.40744 * 119.77345 * 359.47822 * 14 13 12 16 16 C 1.41388 * 120.24085 * 180.24638 * 15 14 13 17 17 H 1.08004 * 120.00275 * 204.55455 * 16 15 14 18 18 C 1.39943 * 120.00257 * 24.54842 * 16 15 14 19 19 N 1.30828 * 119.99433 * 17.71797 * 18 16 15 20 20 Si 1.86799 * 120.00323 * 197.71863 * 18 16 15 21 21 H 1.48501 * 109.46924 * 60.00391 * 20 18 16 22 22 H 1.48501 * 109.47055 * 179.97438 * 20 18 16 23 23 H 1.48490 * 109.47233 * 300.00198 * 20 18 16 24 24 C 1.40676 * 119.52177 * 0.49611 * 15 14 13 25 25 C 1.37756 * 119.73263 * 359.75193 * 24 15 14 26 26 Cl 1.73596 * 119.89202 * 179.97438 * 25 24 15 27 27 H 1.08995 * 109.47791 * 300.00367 * 1 2 3 28 28 H 1.08999 * 109.46985 * 60.00303 * 1 2 3 29 29 H 1.09005 * 109.46814 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47708 * 240.00172 * 2 1 3 31 31 H 1.09002 * 109.47144 * 59.99943 * 3 2 1 32 32 H 1.09006 * 109.47278 * 179.97438 * 3 2 1 33 33 H 1.08999 * 109.47080 * 299.99638 * 3 2 1 34 34 H 0.96697 * 113.99338 * 60.00550 * 6 4 2 35 35 H 1.08997 * 109.47473 * 59.99906 * 7 4 2 36 36 H 1.09000 * 109.46873 * 299.99643 * 7 4 2 37 37 H 0.96999 * 120.00015 * 344.99623 * 8 7 4 38 38 H 1.08005 * 119.86659 * 359.97438 * 13 12 9 39 39 H 1.08006 * 120.11730 * 179.72067 * 14 13 12 40 40 H 0.97003 * 119.99594 * 179.97438 * 19 18 16 41 41 H 1.07995 * 120.13761 * 179.77383 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7211 1.2492 5 1 1.6766 -0.2073 2.1392 6 8 1.5637 -2.0685 1.2493 7 6 3.5700 -0.7206 1.2496 8 7 4.0583 -1.4117 2.4455 9 16 5.6405 -1.8921 2.5363 10 8 5.9255 -2.5666 1.3184 11 8 5.8051 -2.4919 3.8138 12 6 6.6290 -0.4335 2.5402 13 6 7.3829 -0.1163 3.6596 14 6 8.1542 1.0231 3.6761 15 6 8.1850 1.8627 2.5469 16 6 8.9781 3.0331 2.5512 17 1 8.7248 3.8596 1.9037 18 6 10.0914 3.1209 3.3946 19 7 10.6069 2.0356 3.9122 20 14 10.8414 4.7875 3.7811 21 1 9.8247 5.6472 4.4386 22 1 12.0013 4.6093 4.6910 23 1 11.2939 5.4308 2.5216 24 6 7.4167 1.5316 1.4159 25 6 6.6477 0.3888 1.4229 26 17 5.6976 -0.0233 0.0297 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.6765 1.9564 0.8900 32 1 3.1300 1.4426 0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.8491 -2.5865 0.4843 35 1 3.9330 0.3071 1.2497 36 1 3.9336 -1.2343 0.3597 37 1 3.4549 -1.5878 3.1842 38 1 7.3609 -0.7636 4.5239 39 1 8.7371 1.2703 4.5511 40 1 11.3789 2.0964 4.4965 41 1 7.4301 2.1707 0.5454 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451228521.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:58:36 Heat of formation + Delta-G solvation = -125.695444 kcal Electronic energy + Delta-G solvation = -26844.168015 eV Core-core repulsion = 22876.231752 eV Total energy + Delta-G solvation = -3967.936262 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.079 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -38.73856 -37.92694 -36.55899 -35.91412 -35.10482 -34.26172 -34.15471 -34.09625 -30.50170 -29.42826 -28.10807 -26.84096 -26.06746 -23.16811 -21.72786 -21.51655 -20.70597 -18.80935 -17.90438 -17.34919 -16.98799 -16.56891 -15.87942 -15.58636 -15.41951 -14.65751 -14.63778 -14.52492 -14.11358 -13.72508 -13.43127 -13.05369 -12.90215 -12.77736 -12.50873 -12.33589 -12.21939 -12.12751 -11.77886 -11.53836 -11.51237 -11.45224 -11.36157 -11.30014 -11.13718 -11.06830 -10.88430 -10.66666 -10.57229 -10.23522 -10.08685 -9.86303 -9.61633 -9.37896 -8.95842 -8.18814 -7.74895 -7.29951 -4.98735 1.21079 2.01376 2.56079 2.73229 2.80078 2.82703 2.86576 3.55303 3.66878 4.07132 4.32015 4.43405 4.55673 4.74072 4.87972 5.11887 5.16548 5.20831 5.31866 5.46798 5.52230 5.69301 5.72336 5.82886 5.87926 5.90574 5.98801 6.16311 6.17942 6.28758 6.46403 6.49394 6.62552 6.69973 6.93472 7.07678 7.33291 7.38550 7.52490 7.59579 7.70009 8.10368 8.29507 8.38047 9.61124 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.015426 B = 0.003598 C = 0.003169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1814.666844 B = 7780.850640 C = 8833.230533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.126 4.126 3 C -0.155 4.155 4 C 0.101 3.899 5 H 0.103 0.897 6 O -0.557 6.557 7 C 0.079 3.921 8 N -1.116 6.116 9 S 2.699 3.301 10 O -0.971 6.971 11 O -0.984 6.984 12 C -0.789 4.789 13 C -0.007 4.007 14 C -0.181 4.181 15 C 0.142 3.858 16 C -0.424 4.424 17 H 0.091 0.909 18 C 0.070 3.930 19 N -0.757 5.757 20 Si 0.922 3.078 21 H -0.258 1.258 22 H -0.273 1.273 23 H -0.260 1.260 24 C -0.222 4.222 25 C 0.085 3.915 26 Cl -0.101 7.101 27 H 0.054 0.946 28 H 0.052 0.948 29 H 0.060 0.940 30 H 0.074 0.926 31 H 0.058 0.942 32 H 0.066 0.934 33 H 0.057 0.943 34 H 0.374 0.626 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.413 0.587 38 H 0.117 0.883 39 H 0.128 0.872 40 H 0.293 0.707 41 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.668 0.872 -4.063 12.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.145 4.145 3 C -0.212 4.212 4 C 0.040 3.960 5 H 0.121 0.879 6 O -0.362 6.362 7 C -0.047 4.047 8 N -0.873 5.873 9 S 2.795 3.205 10 O -0.961 6.961 11 O -0.975 6.975 12 C -0.884 4.884 13 C -0.027 4.027 14 C -0.201 4.201 15 C 0.138 3.862 16 C -0.451 4.451 17 H 0.109 0.891 18 C -0.153 4.153 19 N -0.379 5.379 20 Si 0.744 3.256 21 H -0.182 1.182 22 H -0.197 1.197 23 H -0.184 1.184 24 C -0.243 4.243 25 C 0.058 3.942 26 Cl -0.072 7.072 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.079 0.921 30 H 0.092 0.908 31 H 0.077 0.923 32 H 0.085 0.915 33 H 0.076 0.924 34 H 0.222 0.778 35 H 0.104 0.896 36 H 0.101 0.899 37 H 0.247 0.753 38 H 0.135 0.865 39 H 0.145 0.855 40 H 0.105 0.895 41 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -11.414 0.069 -3.606 11.971 hybrid contribution 0.614 1.255 -0.212 1.413 sum -10.800 1.324 -3.818 11.531 Atomic orbital electron populations 1.21743 0.94421 1.02168 1.01495 1.21775 0.96856 0.97432 0.98486 1.21927 1.02120 0.95072 1.02127 1.22323 0.92085 0.83071 0.98478 0.87928 1.86547 1.76606 1.23221 1.49829 1.22867 0.95028 0.98752 0.88075 1.55475 1.29283 1.76413 1.26155 1.01168 0.72140 0.74264 0.72928 1.93529 1.83607 1.72271 1.46717 1.93487 1.85531 1.76120 1.42322 1.29138 1.29075 1.26919 1.03250 1.20279 0.92571 0.95758 0.94105 1.21421 1.02756 0.96534 0.99385 1.17710 0.87885 0.91302 0.89295 1.19940 1.06784 1.00575 1.17763 0.89058 1.26188 0.96480 0.99224 0.93434 1.69801 1.17341 1.30019 1.20708 0.86112 0.78926 0.80777 0.79744 1.18198 1.19734 1.18391 1.20942 1.05498 0.98303 0.99601 1.20028 0.93799 0.95338 0.85074 1.98311 1.70055 1.93016 1.45794 0.92718 0.92876 0.92095 0.90796 0.92290 0.91498 0.92384 0.77835 0.89614 0.89878 0.75338 0.86515 0.85450 0.89516 0.87017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.21 9.05 37.16 0.34 -0.88 16 2 C -0.13 -1.20 2.69 -90.62 -0.24 -1.45 16 3 C -0.16 -1.51 8.84 37.16 0.33 -1.18 16 4 C 0.10 1.12 2.64 -26.74 -0.07 1.05 16 5 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 6 O -0.56 -6.32 12.53 -35.23 -0.44 -6.76 16 7 C 0.08 1.09 3.41 -4.04 -0.01 1.08 16 8 N -1.12 -17.17 5.86 -10.62 -0.06 -17.23 16 9 S 2.70 52.98 5.44 -107.50 -0.58 52.40 16 10 O -0.97 -20.88 15.94 -57.17 -0.91 -21.79 16 11 O -0.98 -21.23 16.94 -57.17 -0.97 -22.20 16 12 C -0.79 -17.17 5.91 -39.25 -0.23 -17.40 16 13 C -0.01 -0.15 9.52 -39.67 -0.38 -0.53 16 14 C -0.18 -4.32 8.70 -38.87 -0.34 -4.66 16 15 C 0.14 3.41 5.57 -106.83 -0.60 2.81 16 16 C -0.42 -9.77 9.05 -37.75 -0.34 -10.11 16 17 H 0.09 1.96 7.91 -52.48 -0.41 1.54 16 18 C 0.07 1.53 5.14 -17.34 -0.09 1.44 16 19 N -0.76 -17.23 10.95 55.55 0.61 -16.62 16 20 Si 0.92 16.06 29.59 -169.99 -5.03 11.03 16 21 H -0.26 -4.46 7.11 56.52 0.40 -4.06 16 22 H -0.27 -4.65 7.11 56.52 0.40 -4.25 16 23 H -0.26 -4.48 7.11 56.52 0.40 -4.08 16 24 C -0.22 -4.98 9.57 -38.84 -0.37 -5.35 16 25 C 0.09 1.83 6.08 -39.57 -0.24 1.58 16 26 Cl -0.10 -1.79 20.52 -51.86 -1.06 -2.86 16 27 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.53 7.68 -51.93 -0.40 0.13 16 30 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.07 0.73 6.43 -51.93 -0.33 0.40 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.37 3.34 9.05 45.56 0.41 3.75 16 35 H 0.09 1.22 4.42 -51.93 -0.23 0.99 16 36 H 0.08 1.19 5.86 -51.93 -0.30 0.89 16 37 H 0.41 5.59 8.65 -34.47 -0.30 5.29 16 38 H 0.12 2.49 7.31 -52.48 -0.38 2.11 16 39 H 0.13 3.06 6.16 -52.48 -0.32 2.73 16 40 H 0.29 5.98 8.30 -40.82 -0.34 5.64 16 41 H 0.11 2.31 8.06 -52.49 -0.42 1.89 16 LS Contribution 353.95 15.07 5.33 5.33 Total: -1.00 -28.38 353.95 -9.74 -38.12 By element: Atomic # 1 Polarization: 18.53 SS G_CDS: -4.37 Total: 14.16 kcal Atomic # 6 Polarization: -31.33 SS G_CDS: -2.25 Total: -33.58 kcal Atomic # 7 Polarization: -34.39 SS G_CDS: 0.55 Total: -33.85 kcal Atomic # 8 Polarization: -48.43 SS G_CDS: -2.32 Total: -50.75 kcal Atomic # 14 Polarization: 16.06 SS G_CDS: -5.03 Total: 11.03 kcal Atomic # 16 Polarization: 52.98 SS G_CDS: -0.58 Total: 52.40 kcal Atomic # 17 Polarization: -1.79 SS G_CDS: -1.06 Total: -2.86 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -28.38 -9.74 -38.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451228521.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.576 kcal (2) G-P(sol) polarization free energy of solvation -28.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds