Wall clock time and date at job start Wed Apr 1 2020 04:58:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.46848 * 2 1 4 4 C 1.52995 * 109.47368 * 119.99636 * 2 1 3 5 5 H 1.09002 * 109.47238 * 300.00434 * 4 2 1 6 6 O 1.42909 * 109.46951 * 60.00063 * 4 2 1 7 7 C 1.52995 * 109.47519 * 180.02562 * 4 2 1 8 8 N 1.46501 * 109.47260 * 180.02562 * 7 4 2 9 9 S 1.65600 * 120.00381 * 165.00068 * 8 7 4 10 10 O 1.42105 * 106.40076 * 311.45657 * 9 8 7 11 11 O 1.42092 * 106.40546 * 178.53952 * 9 8 7 12 12 C 1.76199 * 107.21920 * 64.99430 * 9 8 7 13 13 C 1.38630 * 119.75693 * 115.00426 * 12 9 8 14 14 C 1.37601 * 120.26310 * 180.27486 * 13 12 9 15 15 C 1.40744 * 119.77345 * 359.47822 * 14 13 12 16 16 C 1.41388 * 120.24085 * 180.24638 * 15 14 13 17 17 H 1.08004 * 120.00275 * 204.55455 * 16 15 14 18 18 C 1.39943 * 120.00257 * 24.54842 * 16 15 14 19 19 N 1.30828 * 119.99433 * 17.71797 * 18 16 15 20 20 Si 1.86799 * 120.00323 * 197.71863 * 18 16 15 21 21 H 1.48501 * 109.46924 * 60.00391 * 20 18 16 22 22 H 1.48501 * 109.47055 * 179.97438 * 20 18 16 23 23 H 1.48490 * 109.47233 * 300.00198 * 20 18 16 24 24 C 1.40676 * 119.52177 * 0.49611 * 15 14 13 25 25 C 1.37756 * 119.73263 * 359.75193 * 24 15 14 26 26 Cl 1.73596 * 119.89202 * 179.97438 * 25 24 15 27 27 H 1.08995 * 109.47791 * 300.00367 * 1 2 3 28 28 H 1.08999 * 109.46985 * 60.00303 * 1 2 3 29 29 H 1.09005 * 109.46814 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47708 * 240.00172 * 2 1 3 31 31 H 1.09002 * 109.47144 * 59.99943 * 3 2 1 32 32 H 1.09006 * 109.47278 * 179.97438 * 3 2 1 33 33 H 1.08999 * 109.47080 * 299.99638 * 3 2 1 34 34 H 0.96697 * 113.99338 * 60.00550 * 6 4 2 35 35 H 1.08997 * 109.47473 * 59.99906 * 7 4 2 36 36 H 1.09000 * 109.46873 * 299.99643 * 7 4 2 37 37 H 0.96999 * 120.00015 * 344.99623 * 8 7 4 38 38 H 1.08005 * 119.86659 * 359.97438 * 13 12 9 39 39 H 1.08006 * 120.11730 * 179.72067 * 14 13 12 40 40 H 0.97003 * 119.99594 * 179.97438 * 19 18 16 41 41 H 1.07995 * 120.13761 * 179.77383 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7211 1.2492 5 1 1.6766 -0.2073 2.1392 6 8 1.5637 -2.0685 1.2493 7 6 3.5700 -0.7206 1.2496 8 7 4.0583 -1.4117 2.4455 9 16 5.6405 -1.8921 2.5363 10 8 5.9255 -2.5666 1.3184 11 8 5.8051 -2.4919 3.8138 12 6 6.6290 -0.4335 2.5402 13 6 7.3829 -0.1163 3.6596 14 6 8.1542 1.0231 3.6761 15 6 8.1850 1.8627 2.5469 16 6 8.9781 3.0331 2.5512 17 1 8.7248 3.8596 1.9037 18 6 10.0914 3.1209 3.3946 19 7 10.6069 2.0356 3.9122 20 14 10.8414 4.7875 3.7811 21 1 9.8247 5.6472 4.4386 22 1 12.0013 4.6093 4.6910 23 1 11.2939 5.4308 2.5216 24 6 7.4167 1.5316 1.4159 25 6 6.6477 0.3888 1.4229 26 17 5.6976 -0.0233 0.0297 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.6765 1.9564 0.8900 32 1 3.1300 1.4426 0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.8491 -2.5865 0.4843 35 1 3.9330 0.3071 1.2497 36 1 3.9336 -1.2343 0.3597 37 1 3.4549 -1.5878 3.1842 38 1 7.3609 -0.7636 4.5239 39 1 8.7371 1.2703 4.5511 40 1 11.3789 2.0964 4.4965 41 1 7.4301 2.1707 0.5454 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451228521.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:58:36 Heat of formation + Delta-G solvation = -145.911539 kcal Electronic energy + Delta-G solvation = -26845.044650 eV Core-core repulsion = 22876.231752 eV Total energy + Delta-G solvation = -3968.812898 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.079 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.75062 -39.55308 -38.20064 -37.50790 -36.78209 -35.77736 -35.37315 -35.06741 -32.23419 -31.16217 -29.07946 -27.78850 -27.64392 -24.19127 -23.42852 -23.23949 -21.57580 -20.29948 -19.61223 -18.85248 -18.35816 -17.79506 -17.28025 -16.93287 -16.63401 -16.26588 -16.09874 -15.55158 -15.34550 -15.16128 -14.91842 -14.54287 -14.26417 -14.02729 -13.80256 -13.56766 -13.37095 -13.22742 -13.10099 -13.02065 -12.99241 -12.93695 -12.76530 -12.71533 -12.48679 -12.20486 -12.07176 -11.90697 -11.81372 -11.76927 -11.49636 -11.23684 -11.12779 -10.65432 -10.25830 -9.93065 -9.46120 -8.94601 -6.74591 -0.36382 0.30132 0.80180 1.10001 1.36649 1.44297 1.51753 2.09314 2.19362 2.44353 2.84736 3.36513 3.43045 3.60327 3.70993 3.87941 4.06477 4.17701 4.26053 4.41159 4.57085 4.66397 4.73571 4.75772 4.84043 4.89181 4.90533 4.99724 5.02121 5.03741 5.12317 5.21623 5.25821 5.34205 5.46401 5.48144 5.58418 5.77892 5.94225 6.16424 6.35648 6.55830 6.62198 6.81761 7.99993 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.015426 B = 0.003598 C = 0.003169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1814.666844 B = 7780.850640 C = 8833.230533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.122 4.122 3 C -0.157 4.157 4 C 0.110 3.890 5 H 0.107 0.893 6 O -0.565 6.565 7 C 0.073 3.927 8 N -1.101 6.101 9 S 2.721 3.279 10 O -0.989 6.989 11 O -1.004 7.004 12 C -0.804 4.804 13 C -0.015 4.015 14 C -0.202 4.202 15 C 0.117 3.883 16 C -0.448 4.448 17 H 0.101 0.899 18 C 0.034 3.966 19 N -0.789 5.789 20 Si 0.995 3.005 21 H -0.254 1.254 22 H -0.266 1.266 23 H -0.253 1.253 24 C -0.237 4.237 25 C 0.081 3.919 26 Cl -0.069 7.069 27 H 0.054 0.946 28 H 0.063 0.937 29 H 0.059 0.941 30 H 0.078 0.922 31 H 0.061 0.939 32 H 0.051 0.949 33 H 0.069 0.931 34 H 0.385 0.615 35 H 0.083 0.917 36 H 0.079 0.921 37 H 0.424 0.576 38 H 0.123 0.877 39 H 0.118 0.882 40 H 0.302 0.698 41 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.833 1.718 -4.791 13.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.141 4.141 3 C -0.214 4.214 4 C 0.049 3.951 5 H 0.125 0.875 6 O -0.372 6.372 7 C -0.053 4.053 8 N -0.862 5.862 9 S 2.815 3.185 10 O -0.979 6.979 11 O -0.995 6.995 12 C -0.896 4.896 13 C -0.035 4.035 14 C -0.222 4.222 15 C 0.113 3.887 16 C -0.474 4.474 17 H 0.119 0.881 18 C -0.187 4.187 19 N -0.411 5.411 20 Si 0.814 3.186 21 H -0.178 1.178 22 H -0.190 1.190 23 H -0.177 1.177 24 C -0.258 4.258 25 C 0.053 3.947 26 Cl -0.040 7.040 27 H 0.073 0.927 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.097 0.903 31 H 0.080 0.920 32 H 0.070 0.930 33 H 0.088 0.912 34 H 0.234 0.766 35 H 0.100 0.900 36 H 0.097 0.903 37 H 0.261 0.739 38 H 0.141 0.859 39 H 0.136 0.864 40 H 0.113 0.887 41 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -12.576 0.907 -4.341 13.335 hybrid contribution 0.881 0.909 -0.056 1.268 sum -11.695 1.817 -4.397 12.625 Atomic orbital electron populations 1.21707 0.93368 1.02279 1.02075 1.21745 0.97609 0.97059 0.97704 1.21945 1.01147 0.95405 1.02929 1.22260 0.89775 0.83444 0.99643 0.87490 1.86531 1.76539 1.23357 1.50736 1.23021 0.97237 0.98151 0.86924 1.55090 1.27599 1.76258 1.27266 1.00466 0.72672 0.73348 0.72024 1.93501 1.84453 1.72535 1.47374 1.93452 1.86277 1.76482 1.43259 1.29501 1.29512 1.27549 1.03059 1.20435 0.92591 0.95614 0.94905 1.21434 1.03682 0.97591 0.99498 1.18044 0.88845 0.91974 0.89856 1.20292 1.07416 1.00735 1.18918 0.88109 1.27087 0.96338 1.02769 0.92505 1.69840 1.17998 1.32186 1.21116 0.85030 0.78092 0.75830 0.79686 1.17837 1.19006 1.17710 1.21115 1.05901 0.99106 0.99672 1.20145 0.93584 0.94818 0.86124 1.98314 1.68871 1.92724 1.44063 0.92668 0.91810 0.92205 0.90320 0.91951 0.92971 0.91245 0.76588 0.89954 0.90315 0.73942 0.85923 0.86409 0.88652 0.85878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.01 9.05 71.98 0.65 -1.36 16 2 C -0.12 -2.05 2.69 -10.79 -0.03 -2.08 16 3 C -0.16 -2.75 8.84 71.98 0.64 -2.11 16 4 C 0.11 2.22 2.64 30.59 0.08 2.30 16 5 H 0.11 2.10 8.14 -2.39 -0.02 2.08 16 6 O -0.57 -11.56 12.53 -148.98 -1.87 -13.42 16 7 C 0.07 1.90 3.41 86.38 0.29 2.19 16 8 N -1.10 -32.53 5.86 -187.50 -1.10 -33.63 16 9 S 2.72 105.55 5.44 -56.49 -0.31 105.24 16 10 O -0.99 -41.76 15.94 -128.00 -2.04 -43.80 16 11 O -1.00 -43.07 16.94 -128.00 -2.17 -45.24 16 12 C -0.80 -35.21 5.91 22.48 0.13 -35.08 16 13 C -0.02 -0.71 9.52 22.21 0.21 -0.50 16 14 C -0.20 -9.98 8.70 22.73 0.20 -9.78 16 15 C 0.12 5.74 5.57 -21.30 -0.12 5.62 16 16 C -0.45 -20.88 9.05 23.46 0.21 -20.67 16 17 H 0.10 4.33 7.91 -2.91 -0.02 4.31 16 18 C 0.03 1.47 5.14 85.26 0.44 1.91 16 19 N -0.79 -36.50 10.95 21.83 0.24 -36.26 16 20 Si 0.99 32.28 29.59 68.60 2.03 34.31 16 21 H -0.25 -8.07 7.11 99.48 0.71 -7.36 16 22 H -0.27 -8.25 7.11 99.48 0.71 -7.54 16 23 H -0.25 -7.91 7.11 99.48 0.71 -7.21 16 24 C -0.24 -10.73 9.57 22.75 0.22 -10.51 16 25 C 0.08 3.47 6.08 22.28 0.14 3.61 16 26 Cl -0.07 -2.38 20.52 -2.72 -0.06 -2.44 16 27 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.06 0.90 7.68 -2.38 -0.02 0.88 16 30 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.05 1.07 6.43 -2.38 -0.02 1.05 16 33 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.39 6.00 9.05 -74.06 -0.67 5.33 16 35 H 0.08 2.24 4.42 -2.39 -0.01 2.23 16 36 H 0.08 2.13 5.86 -2.39 -0.01 2.11 16 37 H 0.42 10.83 8.65 -96.75 -0.84 9.99 16 38 H 0.12 5.40 7.31 -2.91 -0.02 5.38 16 39 H 0.12 5.91 6.16 -2.91 -0.02 5.89 16 40 H 0.30 12.42 8.30 -92.71 -0.77 11.65 16 41 H 0.12 5.10 8.06 -2.91 -0.02 5.08 16 Total: -1.00 -60.33 353.95 -2.62 -62.95 By element: Atomic # 1 Polarization: 39.17 SS G_CDS: -0.42 Total: 38.75 kcal Atomic # 6 Polarization: -69.52 SS G_CDS: 3.06 Total: -66.46 kcal Atomic # 7 Polarization: -69.03 SS G_CDS: -0.86 Total: -69.89 kcal Atomic # 8 Polarization: -96.39 SS G_CDS: -6.08 Total: -102.46 kcal Atomic # 14 Polarization: 32.28 SS G_CDS: 2.03 Total: 34.31 kcal Atomic # 16 Polarization: 105.55 SS G_CDS: -0.31 Total: 105.24 kcal Atomic # 17 Polarization: -2.38 SS G_CDS: -0.06 Total: -2.44 kcal Total: -60.33 -2.62 -62.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451228521.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.961 kcal (2) G-P(sol) polarization free energy of solvation -60.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds