Wall clock time and date at job start Wed Apr 1 2020 05:03:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53009 * 109.47192 * 2 1 4 4 N 1.46497 * 109.46948 * 180.02562 * 3 2 1 5 5 C 1.46492 * 120.00158 * 274.99791 * 4 3 2 6 6 C 1.53002 * 109.47364 * 273.78878 * 5 4 3 7 7 O 1.42907 * 109.46902 * 65.00302 * 6 5 4 8 8 S 1.65607 * 119.99780 * 95.00519 * 4 3 2 9 9 O 1.42099 * 106.39909 * 155.25668 * 8 4 3 10 10 O 1.42103 * 106.40287 * 22.33701 * 8 4 3 11 11 C 1.76198 * 107.21688 * 268.79763 * 8 4 3 12 12 C 1.38641 * 119.75608 * 344.80003 * 11 8 4 13 13 C 1.37608 * 120.26268 * 180.29816 * 12 11 8 14 14 C 1.40738 * 119.76732 * 359.72292 * 13 12 11 15 15 C 1.41399 * 120.23482 * 180.02562 * 14 13 12 16 16 H 1.08006 * 119.99781 * 29.04131 * 15 14 13 17 17 C 1.39946 * 120.00283 * 209.03379 * 15 14 13 18 18 N 1.30830 * 119.99625 * 11.82515 * 17 15 14 19 19 Si 1.86797 * 120.00270 * 191.82078 * 17 15 14 20 20 H 1.48499 * 109.46798 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.46764 * 119.99933 * 19 17 15 22 22 H 1.48489 * 109.47174 * 240.00288 * 19 17 15 23 23 C 1.40676 * 119.52867 * 359.97438 * 14 13 12 24 24 C 1.37758 * 119.73231 * 0.02562 * 23 14 13 25 25 Cl 1.73597 * 119.88854 * 179.97438 * 24 23 14 26 26 H 1.09006 * 109.47012 * 299.99510 * 1 2 3 27 27 H 1.09003 * 109.47090 * 59.99817 * 1 2 3 28 28 H 1.08992 * 109.47055 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47012 * 240.00490 * 2 1 3 30 30 H 1.08993 * 109.47570 * 120.00436 * 2 1 3 31 31 H 1.08999 * 109.46776 * 59.99907 * 3 2 1 32 32 H 1.09001 * 109.46971 * 300.00549 * 3 2 1 33 33 H 1.09004 * 109.46998 * 33.79233 * 5 4 3 34 34 H 1.09001 * 109.47330 * 153.78914 * 5 4 3 35 35 H 1.09000 * 109.46842 * 184.99613 * 6 5 4 36 36 H 1.08996 * 109.47185 * 304.99842 * 6 5 4 37 37 H 0.96702 * 113.99550 * 180.02562 * 7 6 5 38 38 H 1.07997 * 119.86824 * 359.97438 * 12 11 8 39 39 H 1.07995 * 120.11101 * 179.69586 * 13 12 11 40 40 H 0.96998 * 119.99889 * 179.97438 * 18 17 15 41 41 H 1.08000 * 120.13313 * 180.02562 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.2380 1.3318 1.2629 6 6 4.4108 2.7229 1.8759 7 8 3.1302 3.2512 2.2269 8 16 4.3324 1.5678 -1.4297 9 8 5.6053 2.1124 -1.1099 10 8 3.4406 2.1694 -2.3583 11 6 4.6234 -0.0705 -2.0092 12 6 4.4623 -1.1441 -1.1470 13 6 4.6927 -2.4275 -1.5869 14 6 5.0878 -2.6490 -2.9194 15 6 5.3266 -3.9637 -3.3820 16 1 4.7971 -4.7957 -2.9416 17 6 6.2490 -4.1868 -4.4105 18 7 7.0551 -3.2271 -4.7858 19 14 6.3294 -5.8549 -5.2475 20 1 5.3195 -6.7608 -4.6436 21 1 6.0473 -5.6956 -6.6967 22 1 7.6849 -6.4340 -5.0678 23 6 5.2423 -1.5534 -3.7881 24 6 5.0063 -0.2770 -3.3265 25 17 5.1964 1.0781 -4.3948 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 1.6767 1.9564 0.8900 32 1 1.6766 1.9564 -0.8900 33 1 3.6803 0.6977 1.9521 34 1 5.2181 0.8923 1.0771 35 1 5.0317 2.6518 2.7690 36 1 4.8898 3.3821 1.1520 37 1 3.1635 4.1332 2.6219 38 1 4.1598 -0.9722 -0.1246 39 1 4.5712 -3.2616 -0.9118 40 1 7.6947 -3.3818 -5.4985 41 1 5.5447 -1.7122 -4.8126 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451229837.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:03:30 Heat of formation + Delta-G solvation = -145.795183 kcal Electronic energy + Delta-G solvation = -27194.082410 eV Core-core repulsion = 23225.274558 eV Total energy + Delta-G solvation = -3968.807852 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.079 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.65127 -38.81347 -38.18085 -37.51150 -36.81718 -36.76543 -35.77364 -33.85159 -32.07828 -31.29831 -30.00344 -27.76422 -26.42469 -23.65193 -23.53545 -23.23830 -22.11259 -19.86290 -19.58005 -18.93311 -18.34362 -17.84778 -17.43159 -17.33737 -16.22512 -16.14708 -15.84438 -15.55927 -15.39992 -15.02493 -14.68141 -14.41006 -14.34401 -14.22200 -14.10061 -13.70005 -13.43342 -13.29807 -13.09380 -13.05154 -12.97942 -12.80778 -12.70604 -12.39421 -12.33600 -12.24935 -12.16861 -12.06622 -11.98063 -11.83207 -11.44746 -11.32932 -11.24477 -10.82796 -9.97947 -9.82057 -9.52859 -8.87590 -6.72755 -0.43459 0.28378 0.82039 1.15438 1.36660 1.41466 1.54063 2.06256 2.10692 2.41904 2.79307 3.31536 3.44515 3.66481 3.76931 4.11526 4.15691 4.23678 4.30986 4.42778 4.50879 4.57415 4.62389 4.77332 4.78903 4.89624 4.91900 4.95924 5.04258 5.06594 5.11886 5.18512 5.28006 5.39452 5.42448 5.49507 5.50683 5.74546 5.81030 5.98596 6.32875 6.59546 6.64229 6.97348 8.06899 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.015210 B = 0.003844 C = 0.003520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1840.481312 B = 7283.187875 C = 7953.288509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.151 4.151 3 C 0.119 3.881 4 N -0.984 5.984 5 C 0.109 3.891 6 C 0.057 3.943 7 O -0.579 6.579 8 S 2.707 3.293 9 O -0.998 6.998 10 O -0.991 6.991 11 C -0.800 4.800 12 C 0.010 3.990 13 C -0.240 4.240 14 C 0.117 3.883 15 C -0.455 4.455 16 H 0.103 0.897 17 C 0.029 3.971 18 N -0.804 5.804 19 Si 0.995 3.005 20 H -0.247 1.247 21 H -0.266 1.266 22 H -0.263 1.263 23 C -0.184 4.184 24 C 0.055 3.945 25 Cl -0.104 7.104 26 H 0.072 0.928 27 H 0.049 0.951 28 H 0.061 0.939 29 H 0.045 0.955 30 H 0.082 0.918 31 H 0.113 0.887 32 H 0.071 0.929 33 H 0.116 0.884 34 H 0.094 0.906 35 H 0.085 0.915 36 H 0.033 0.967 37 H 0.394 0.606 38 H 0.148 0.852 39 H 0.129 0.871 40 H 0.298 0.702 41 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.881 3.599 12.162 14.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.190 4.190 3 C -0.005 4.005 4 N -0.823 5.823 5 C -0.016 4.016 6 C -0.022 4.022 7 O -0.387 6.387 8 S 2.801 3.199 9 O -0.988 6.988 10 O -0.981 6.981 11 C -0.891 4.891 12 C -0.009 4.009 13 C -0.260 4.260 14 C 0.113 3.887 15 C -0.482 4.482 16 H 0.121 0.879 17 C -0.189 4.189 18 N -0.427 5.427 19 Si 0.814 3.186 20 H -0.170 1.170 21 H -0.191 1.191 22 H -0.188 1.188 23 C -0.205 4.205 24 C 0.027 3.973 25 Cl -0.075 7.075 26 H 0.091 0.909 27 H 0.068 0.932 28 H 0.080 0.920 29 H 0.064 0.936 30 H 0.101 0.899 31 H 0.131 0.869 32 H 0.089 0.911 33 H 0.134 0.866 34 H 0.112 0.888 35 H 0.103 0.897 36 H 0.051 0.949 37 H 0.243 0.757 38 H 0.166 0.834 39 H 0.147 0.853 40 H 0.109 0.891 41 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -6.597 4.010 11.275 13.664 hybrid contribution 0.784 -0.490 -0.902 1.292 sum -5.813 3.521 10.372 12.400 Atomic orbital electron populations 1.21664 0.93898 1.02381 1.02395 1.22079 0.97555 0.96838 1.02567 1.21602 0.76718 0.97534 1.04648 1.57205 1.15704 1.89380 1.20017 1.21722 0.97497 0.97602 0.84740 1.22666 0.85617 0.94760 0.99183 1.86411 1.29358 1.38463 1.84455 1.01084 0.72544 0.73759 0.72464 1.93471 1.42966 1.78036 1.84335 1.93473 1.66000 1.76107 1.62499 1.29620 1.34181 1.23086 1.02192 1.20468 0.92047 0.91090 0.97291 1.21425 1.12332 0.96823 0.95433 1.18095 0.86230 0.93251 0.91150 1.20288 1.18941 0.93777 1.15152 0.87859 1.27087 0.92878 1.03566 0.95391 1.69847 1.13808 1.35970 1.23103 0.84942 0.79750 0.75782 0.78109 1.17029 1.19092 1.18775 1.21264 1.08235 0.90120 1.00879 1.20277 0.99665 0.87990 0.89390 1.98309 1.96128 1.45978 1.67078 0.90897 0.93168 0.91992 0.93606 0.89923 0.86911 0.91069 0.86598 0.88781 0.89672 0.94906 0.75687 0.83424 0.85272 0.89076 0.86444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.87 9.91 71.98 0.71 -2.15 16 2 C -0.15 -3.61 5.77 30.60 0.18 -3.43 16 3 C 0.12 3.10 5.51 86.38 0.48 3.57 16 4 N -0.98 -28.95 1.91 -515.79 -0.98 -29.93 16 5 C 0.11 2.50 5.03 86.38 0.43 2.93 16 6 C 0.06 1.15 7.39 71.98 0.53 1.68 16 7 O -0.58 -10.39 12.08 -148.98 -1.80 -12.19 16 8 S 2.71 110.19 4.80 -56.49 -0.27 109.92 16 9 O -1.00 -44.40 16.93 -128.00 -2.17 -46.57 16 10 O -0.99 -44.69 15.19 -128.00 -1.94 -46.64 16 11 C -0.80 -36.00 5.86 22.48 0.13 -35.86 16 12 C 0.01 0.41 8.42 22.22 0.19 0.60 16 13 C -0.24 -10.43 9.79 22.73 0.22 -10.21 16 14 C 0.12 5.82 5.54 -21.29 -0.12 5.71 16 15 C -0.45 -21.67 9.06 23.46 0.21 -21.46 16 16 H 0.10 4.51 7.87 -2.91 -0.02 4.48 16 17 C 0.03 1.34 5.23 85.26 0.45 1.78 16 18 N -0.80 -39.24 10.92 21.83 0.24 -39.00 16 19 Si 0.99 33.91 29.58 68.60 2.03 35.94 16 20 H -0.25 -7.99 7.11 99.48 0.71 -7.28 16 21 H -0.27 -8.95 7.11 99.48 0.71 -8.24 16 22 H -0.26 -8.65 7.11 99.48 0.71 -7.94 16 23 C -0.18 -9.65 8.43 22.75 0.19 -9.46 16 24 C 0.06 2.78 6.29 22.27 0.14 2.92 16 25 Cl -0.10 -4.95 26.75 -2.72 -0.07 -5.03 16 26 H 0.07 1.15 8.14 -2.38 -0.02 1.13 16 27 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.05 1.35 7.08 -2.38 -0.02 1.33 16 30 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.11 2.46 6.71 -2.39 -0.02 2.44 16 32 H 0.07 2.10 6.90 -2.39 -0.02 2.08 16 33 H 0.12 1.97 8.10 -2.38 -0.02 1.95 16 34 H 0.09 2.20 7.69 -2.39 -0.02 2.18 16 35 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.03 0.80 8.02 -2.39 -0.02 0.78 16 37 H 0.39 3.69 9.12 -74.06 -0.68 3.01 16 38 H 0.15 4.53 6.27 -2.91 -0.02 4.52 16 39 H 0.13 4.88 8.06 -2.91 -0.02 4.85 16 40 H 0.30 13.05 8.30 -92.71 -0.77 12.28 16 41 H 0.12 6.42 6.29 -2.91 -0.02 6.40 16 Total: -1.00 -67.10 362.83 -0.83 -67.94 By element: Atomic # 1 Polarization: 28.56 SS G_CDS: 0.39 Total: 28.95 kcal Atomic # 6 Polarization: -67.14 SS G_CDS: 3.75 Total: -63.39 kcal Atomic # 7 Polarization: -68.19 SS G_CDS: -0.75 Total: -68.93 kcal Atomic # 8 Polarization: -99.49 SS G_CDS: -5.91 Total: -105.40 kcal Atomic # 14 Polarization: 33.91 SS G_CDS: 2.03 Total: 35.94 kcal Atomic # 16 Polarization: 110.19 SS G_CDS: -0.27 Total: 109.92 kcal Atomic # 17 Polarization: -4.95 SS G_CDS: -0.07 Total: -5.03 kcal Total: -67.10 -0.83 -67.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451229837.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.857 kcal (2) G-P(sol) polarization free energy of solvation -67.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds