Wall clock time and date at job start Wed Apr 1 2020 04:58:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47218 * 2 1 4 4 C 1.53009 * 109.47130 * 305.00175 * 3 2 1 5 5 O 1.42897 * 109.47070 * 64.99770 * 3 2 1 6 6 C 1.52999 * 109.47548 * 184.99994 * 3 2 1 7 7 N 1.46504 * 109.47368 * 179.97438 * 6 3 2 8 8 S 1.65593 * 120.00086 * 165.00163 * 7 6 3 9 9 O 1.42100 * 106.40359 * 311.46272 * 8 7 6 10 10 O 1.42099 * 106.40479 * 178.54025 * 8 7 6 11 11 C 1.76205 * 107.21958 * 64.99560 * 8 7 6 12 12 C 1.38641 * 119.75396 * 115.25572 * 11 8 7 13 13 C 1.37599 * 120.26069 * 180.30180 * 12 11 8 14 14 C 1.40736 * 119.77287 * 359.72208 * 13 12 11 15 15 C 1.41398 * 120.23811 * 180.02562 * 14 13 12 16 16 H 1.08001 * 120.00229 * 24.37612 * 15 14 13 17 17 C 1.39942 * 120.00116 * 204.37053 * 15 14 13 18 18 N 1.30829 * 119.99902 * 17.87581 * 17 15 14 19 19 Si 1.86796 * 120.00336 * 197.87061 * 17 15 14 20 20 H 1.48504 * 109.47225 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.47094 * 119.99951 * 19 17 15 22 22 H 1.48500 * 109.47470 * 240.00291 * 19 17 15 23 23 C 1.40684 * 119.52449 * 0.02562 * 14 13 12 24 24 C 1.37749 * 119.73013 * 359.97438 * 23 14 13 25 25 Cl 1.73604 * 119.88857 * 179.97438 * 24 23 14 26 26 H 1.08994 * 109.47114 * 299.99784 * 1 2 3 27 27 H 1.08993 * 109.46871 * 60.00141 * 1 2 3 28 28 H 1.09001 * 109.46734 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47132 * 239.99911 * 2 1 3 30 30 H 1.08999 * 109.47690 * 120.00143 * 2 1 3 31 31 H 1.09005 * 109.46393 * 299.99630 * 4 3 2 32 32 H 1.08994 * 109.46881 * 59.99439 * 4 3 2 33 33 H 1.08995 * 109.47070 * 180.02562 * 4 3 2 34 34 H 0.96698 * 113.99759 * 60.00504 * 5 3 2 35 35 H 1.09001 * 109.46964 * 60.00052 * 6 3 2 36 36 H 1.09005 * 109.47045 * 300.00288 * 6 3 2 37 37 H 0.96998 * 119.99810 * 344.99647 * 7 6 3 38 38 H 1.08000 * 119.86798 * 0.02562 * 12 11 8 39 39 H 1.08003 * 120.11358 * 179.70469 * 13 12 11 40 40 H 0.97000 * 119.99707 * 180.02562 * 18 17 15 41 41 H 1.08000 * 120.13143 * 180.02562 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4299 2.1992 -1.1817 5 8 1.6619 2.0814 1.2210 6 6 3.5648 1.4444 -0.1257 7 7 4.0531 2.8257 -0.1263 8 16 5.6606 3.1357 0.1225 9 8 6.0414 2.3854 1.2676 10 8 5.8165 4.5451 0.0297 11 6 6.5416 2.4469 -1.2391 12 6 7.2300 3.2814 -2.1063 13 6 7.9163 2.7551 -3.1765 14 6 7.9230 1.3635 -3.3865 15 6 8.6254 0.8122 -4.4828 16 1 9.4523 1.3515 -4.9207 17 6 8.2494 -0.4324 -5.0003 18 7 7.0686 -0.9249 -4.7266 19 14 9.4330 -1.3905 -6.0821 20 1 10.6938 -0.6215 -6.2385 21 1 9.7289 -2.7021 -5.4515 22 1 8.8179 -1.6100 -7.4157 23 6 7.2257 0.5250 -2.4978 24 6 6.5453 1.0732 -1.4329 25 17 5.6829 0.0423 -0.3341 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.7183 1.7118 -2.1130 32 1 0.3436 2.1978 -1.0921 33 1 1.7936 3.2267 -1.1819 34 1 2.0141 1.6542 2.0138 35 1 3.8532 0.9571 -1.0571 36 1 3.9995 0.9053 0.7161 37 1 3.4347 3.5586 -0.2726 38 1 7.2238 4.3490 -1.9436 39 1 8.4478 3.4078 -3.8532 40 1 6.8081 -1.7878 -5.0850 41 1 7.2246 -0.5443 -2.6494 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451231266.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:58:27 Heat of formation + Delta-G solvation = -120.976567 kcal Electronic energy + Delta-G solvation = -27126.464952 eV Core-core repulsion = 23158.733316 eV Total energy + Delta-G solvation = -3967.731636 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.079 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -38.91294 -37.91523 -36.53510 -35.80033 -35.09777 -34.16484 -34.14950 -33.13658 -30.36847 -29.52411 -29.17209 -26.68049 -26.05827 -23.19942 -21.85154 -21.36785 -20.27453 -18.88083 -17.90814 -17.35482 -16.97655 -16.36883 -15.71729 -15.50344 -15.39808 -14.81534 -14.58988 -14.49299 -14.03807 -13.67328 -13.44071 -12.89154 -12.74747 -12.54798 -12.49120 -12.27166 -12.21568 -12.12522 -11.69776 -11.65091 -11.51698 -11.45691 -11.33361 -11.28904 -11.19473 -10.99461 -10.81173 -10.63497 -10.46675 -10.20194 -10.10341 -9.89065 -9.66666 -9.28540 -8.91912 -8.14756 -7.75499 -7.31436 -4.98893 1.23831 2.00180 2.60460 2.78169 2.82350 2.87069 2.87477 3.55059 3.69315 4.04836 4.26631 4.45610 4.69131 4.79149 4.88194 5.11365 5.21528 5.26029 5.39095 5.53581 5.74809 5.77821 5.84907 5.88584 5.91040 5.97152 5.99047 6.19856 6.25028 6.32266 6.36760 6.50670 6.62772 6.76060 6.95426 7.12801 7.28015 7.40296 7.53663 7.69058 7.71803 8.03521 8.29767 8.36256 9.58874 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.012974 B = 0.004137 C = 0.003479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2157.664665 B = 6765.851480 C = 8047.219372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.150 4.150 3 C 0.122 3.878 4 C -0.142 4.142 5 O -0.555 6.555 6 C 0.089 3.911 7 N -1.114 6.114 8 S 2.699 3.301 9 O -0.972 6.972 10 O -0.987 6.987 11 C -0.791 4.791 12 C 0.011 3.989 13 C -0.236 4.236 14 C 0.141 3.859 15 C -0.423 4.423 16 H 0.094 0.906 17 C 0.070 3.930 18 N -0.759 5.759 19 Si 0.919 3.081 20 H -0.255 1.255 21 H -0.266 1.266 22 H -0.269 1.269 23 C -0.167 4.167 24 C 0.070 3.930 25 Cl -0.101 7.101 26 H 0.059 0.941 27 H 0.058 0.942 28 H 0.051 0.949 29 H 0.076 0.924 30 H 0.066 0.934 31 H 0.074 0.926 32 H 0.066 0.934 33 H 0.063 0.937 34 H 0.375 0.625 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.412 0.588 38 H 0.118 0.882 39 H 0.107 0.893 40 H 0.292 0.708 41 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.555 -1.462 3.056 9.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.188 4.188 3 C 0.080 3.920 4 C -0.199 4.199 5 O -0.361 6.361 6 C -0.038 4.038 7 N -0.872 5.872 8 S 2.795 3.205 9 O -0.962 6.962 10 O -0.977 6.977 11 C -0.886 4.886 12 C -0.009 4.009 13 C -0.257 4.257 14 C 0.137 3.863 15 C -0.449 4.449 16 H 0.112 0.888 17 C -0.153 4.153 18 N -0.380 5.380 19 Si 0.742 3.258 20 H -0.178 1.178 21 H -0.190 1.190 22 H -0.193 1.193 23 C -0.188 4.188 24 C 0.042 3.958 25 Cl -0.072 7.072 26 H 0.078 0.922 27 H 0.077 0.923 28 H 0.070 0.930 29 H 0.095 0.905 30 H 0.085 0.915 31 H 0.093 0.907 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.222 0.778 35 H 0.103 0.897 36 H 0.101 0.899 37 H 0.247 0.753 38 H 0.136 0.864 39 H 0.125 0.875 40 H 0.103 0.897 41 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -8.654 -1.062 3.460 9.380 hybrid contribution 0.483 -1.140 -0.866 1.511 sum -8.171 -2.202 2.593 8.851 Atomic orbital electron populations 1.21745 0.95084 1.01253 1.02438 1.22156 0.97119 0.96333 1.03202 1.21524 0.92479 0.92054 0.85946 1.21813 1.01242 1.00834 0.96027 1.86501 1.76741 1.57537 1.15340 1.22770 0.94335 0.83015 1.03643 1.55469 1.27336 1.13222 1.91206 1.01150 0.72104 0.72678 0.74546 1.93527 1.81627 1.73029 1.47970 1.93480 1.85595 1.30623 1.88046 1.29122 1.30715 1.00516 1.28243 1.20192 0.91968 0.97278 0.91446 1.21118 1.08597 0.94874 1.01104 1.17723 0.87416 0.90843 0.90318 1.20026 1.12821 1.01325 1.10762 0.88828 1.26199 0.95291 0.97304 0.96519 1.69796 1.17181 1.17344 1.33699 0.86049 0.80887 0.79645 0.79217 1.17798 1.19049 1.19343 1.21283 1.02957 1.00707 0.93859 1.20067 0.96046 0.88420 0.91306 1.98304 1.74624 1.70443 1.63805 0.92234 0.92303 0.93027 0.90530 0.91541 0.90749 0.91534 0.91799 0.77762 0.89720 0.89931 0.75322 0.86446 0.87499 0.89661 0.84822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 9.32 37.16 0.35 -1.04 16 2 C -0.15 -1.58 5.20 -26.73 -0.14 -1.72 16 3 C 0.12 1.48 0.78 -90.62 -0.07 1.40 16 4 C -0.14 -1.64 8.18 37.16 0.30 -1.34 16 5 O -0.56 -6.70 12.38 -35.23 -0.44 -7.14 16 6 C 0.09 1.32 3.21 -4.04 -0.01 1.30 16 7 N -1.11 -17.79 5.72 -10.61 -0.06 -17.85 16 8 S 2.70 53.07 5.44 -107.50 -0.58 52.48 16 9 O -0.97 -20.90 15.95 -57.17 -0.91 -21.81 16 10 O -0.99 -21.00 16.94 -57.17 -0.97 -21.97 16 11 C -0.79 -17.22 5.91 -39.25 -0.23 -17.45 16 12 C 0.01 0.25 9.52 -39.67 -0.38 -0.13 16 13 C -0.24 -5.31 9.79 -38.87 -0.38 -5.69 16 14 C 0.14 3.38 5.58 -106.83 -0.60 2.79 16 15 C -0.42 -9.73 9.05 -37.74 -0.34 -10.07 16 16 H 0.09 2.03 7.91 -52.49 -0.41 1.61 16 17 C 0.07 1.51 5.14 -17.34 -0.09 1.42 16 18 N -0.76 -16.89 10.95 55.55 0.61 -16.28 16 19 Si 0.92 16.02 29.59 -169.99 -5.03 10.99 16 20 H -0.25 -4.41 7.11 56.52 0.40 -4.01 16 21 H -0.27 -4.60 7.11 56.52 0.40 -4.20 16 22 H -0.27 -4.61 7.11 56.52 0.40 -4.20 16 23 C -0.17 -3.97 8.47 -38.84 -0.33 -4.30 16 24 C 0.07 1.55 6.08 -39.58 -0.24 1.31 16 25 Cl -0.10 -1.92 20.52 -51.86 -1.06 -2.98 16 26 H 0.06 0.57 7.82 -51.93 -0.41 0.16 16 27 H 0.06 0.54 6.34 -51.93 -0.33 0.21 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.07 0.69 6.34 -51.93 -0.33 0.36 16 33 H 0.06 0.75 6.60 -51.93 -0.34 0.41 16 34 H 0.38 3.59 9.04 45.56 0.41 4.00 16 35 H 0.08 1.34 6.13 -51.93 -0.32 1.02 16 36 H 0.08 1.26 5.86 -51.93 -0.30 0.95 16 37 H 0.41 5.88 7.08 -34.46 -0.24 5.63 16 38 H 0.12 2.34 7.31 -52.49 -0.38 1.96 16 39 H 0.11 2.18 8.06 -52.48 -0.42 1.75 16 40 H 0.29 5.79 8.30 -40.82 -0.34 5.45 16 41 H 0.13 3.22 6.15 -52.49 -0.32 2.90 16 LS Contribution 350.58 15.07 5.28 5.28 Total: -1.00 -28.18 350.58 -9.56 -37.74 By element: Atomic # 1 Polarization: 19.29 SS G_CDS: -4.23 Total: 15.06 kcal Atomic # 6 Polarization: -31.35 SS G_CDS: -2.16 Total: -33.51 kcal Atomic # 7 Polarization: -34.68 SS G_CDS: 0.55 Total: -34.13 kcal Atomic # 8 Polarization: -48.60 SS G_CDS: -2.32 Total: -50.92 kcal Atomic # 14 Polarization: 16.02 SS G_CDS: -5.03 Total: 10.99 kcal Atomic # 16 Polarization: 53.07 SS G_CDS: -0.58 Total: 52.48 kcal Atomic # 17 Polarization: -1.92 SS G_CDS: -1.06 Total: -2.98 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -28.18 -9.56 -37.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451231266.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.240 kcal (2) G-P(sol) polarization free energy of solvation -28.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds