Wall clock time and date at job start Wed Apr 1 2020 04:58:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47218 * 2 1 4 4 C 1.53009 * 109.47130 * 305.00175 * 3 2 1 5 5 O 1.42897 * 109.47070 * 64.99770 * 3 2 1 6 6 C 1.52999 * 109.47548 * 184.99994 * 3 2 1 7 7 N 1.46504 * 109.47368 * 179.97438 * 6 3 2 8 8 S 1.65593 * 120.00086 * 165.00163 * 7 6 3 9 9 O 1.42100 * 106.40359 * 311.46272 * 8 7 6 10 10 O 1.42099 * 106.40479 * 178.54025 * 8 7 6 11 11 C 1.76205 * 107.21958 * 64.99560 * 8 7 6 12 12 C 1.38641 * 119.75396 * 115.25572 * 11 8 7 13 13 C 1.37599 * 120.26069 * 180.30180 * 12 11 8 14 14 C 1.40736 * 119.77287 * 359.72208 * 13 12 11 15 15 C 1.41398 * 120.23811 * 180.02562 * 14 13 12 16 16 H 1.08001 * 120.00229 * 24.37612 * 15 14 13 17 17 C 1.39942 * 120.00116 * 204.37053 * 15 14 13 18 18 N 1.30829 * 119.99902 * 17.87581 * 17 15 14 19 19 Si 1.86796 * 120.00336 * 197.87061 * 17 15 14 20 20 H 1.48504 * 109.47225 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.47094 * 119.99951 * 19 17 15 22 22 H 1.48500 * 109.47470 * 240.00291 * 19 17 15 23 23 C 1.40684 * 119.52449 * 0.02562 * 14 13 12 24 24 C 1.37749 * 119.73013 * 359.97438 * 23 14 13 25 25 Cl 1.73604 * 119.88857 * 179.97438 * 24 23 14 26 26 H 1.08994 * 109.47114 * 299.99784 * 1 2 3 27 27 H 1.08993 * 109.46871 * 60.00141 * 1 2 3 28 28 H 1.09001 * 109.46734 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47132 * 239.99911 * 2 1 3 30 30 H 1.08999 * 109.47690 * 120.00143 * 2 1 3 31 31 H 1.09005 * 109.46393 * 299.99630 * 4 3 2 32 32 H 1.08994 * 109.46881 * 59.99439 * 4 3 2 33 33 H 1.08995 * 109.47070 * 180.02562 * 4 3 2 34 34 H 0.96698 * 113.99759 * 60.00504 * 5 3 2 35 35 H 1.09001 * 109.46964 * 60.00052 * 6 3 2 36 36 H 1.09005 * 109.47045 * 300.00288 * 6 3 2 37 37 H 0.96998 * 119.99810 * 344.99647 * 7 6 3 38 38 H 1.08000 * 119.86798 * 0.02562 * 12 11 8 39 39 H 1.08003 * 120.11358 * 179.70469 * 13 12 11 40 40 H 0.97000 * 119.99707 * 180.02562 * 18 17 15 41 41 H 1.08000 * 120.13143 * 180.02562 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4299 2.1992 -1.1817 5 8 1.6619 2.0814 1.2210 6 6 3.5648 1.4444 -0.1257 7 7 4.0531 2.8257 -0.1263 8 16 5.6606 3.1357 0.1225 9 8 6.0414 2.3854 1.2676 10 8 5.8165 4.5451 0.0297 11 6 6.5416 2.4469 -1.2391 12 6 7.2300 3.2814 -2.1063 13 6 7.9163 2.7551 -3.1765 14 6 7.9230 1.3635 -3.3865 15 6 8.6254 0.8122 -4.4828 16 1 9.4523 1.3515 -4.9207 17 6 8.2494 -0.4324 -5.0003 18 7 7.0686 -0.9249 -4.7266 19 14 9.4330 -1.3905 -6.0821 20 1 10.6938 -0.6215 -6.2385 21 1 9.7289 -2.7021 -5.4515 22 1 8.8179 -1.6100 -7.4157 23 6 7.2257 0.5250 -2.4978 24 6 6.5453 1.0732 -1.4329 25 17 5.6829 0.0423 -0.3341 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.7183 1.7118 -2.1130 32 1 0.3436 2.1978 -1.0921 33 1 1.7936 3.2267 -1.1819 34 1 2.0141 1.6542 2.0138 35 1 3.8532 0.9571 -1.0571 36 1 3.9995 0.9053 0.7161 37 1 3.4347 3.5586 -0.2726 38 1 7.2238 4.3490 -1.9436 39 1 8.4478 3.4078 -3.8532 40 1 6.8081 -1.7878 -5.0850 41 1 7.2246 -0.5443 -2.6494 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451231266.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:58:26 Heat of formation + Delta-G solvation = -140.793279 kcal Electronic energy + Delta-G solvation = -27127.324269 eV Core-core repulsion = 23158.733316 eV Total energy + Delta-G solvation = -3968.590953 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.079 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.93987 -39.60213 -38.18544 -37.43648 -36.77145 -35.82409 -35.39375 -34.04255 -32.08263 -31.24982 -30.11511 -27.83732 -27.69363 -24.16550 -23.55419 -23.08671 -21.25721 -20.38418 -19.60792 -18.84162 -18.45554 -17.66981 -17.32573 -16.77016 -16.44978 -16.19839 -16.10921 -15.86052 -15.31645 -15.12917 -14.92678 -14.46880 -14.22499 -14.05710 -13.65693 -13.48357 -13.30475 -13.15330 -13.10890 -13.05050 -12.98588 -12.95216 -12.73391 -12.69971 -12.58394 -12.21682 -12.12662 -11.99727 -11.83020 -11.74987 -11.47993 -11.27385 -11.15394 -10.61777 -10.29089 -9.88040 -9.46751 -8.94492 -6.73356 -0.34272 0.29962 0.84720 1.17948 1.36418 1.41490 1.53978 2.09762 2.19400 2.43043 2.86104 3.32379 3.36709 3.60358 3.70356 3.86851 3.97147 4.21731 4.31931 4.44346 4.63852 4.66099 4.70519 4.79617 4.82576 4.85540 4.92007 4.98044 5.06081 5.09115 5.13976 5.15437 5.23440 5.38512 5.39243 5.47680 5.53202 5.79230 5.99524 6.15635 6.30764 6.57255 6.62587 6.84572 7.99677 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.012974 B = 0.004137 C = 0.003479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2157.664665 B = 6765.851480 C = 8047.219372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.149 4.149 3 C 0.129 3.871 4 C -0.146 4.146 5 O -0.562 6.562 6 C 0.084 3.916 7 N -1.100 6.100 8 S 2.722 3.278 9 O -0.989 6.989 10 O -1.002 7.002 11 C -0.806 4.806 12 C 0.004 3.996 13 C -0.250 4.250 14 C 0.114 3.886 15 C -0.447 4.447 16 H 0.099 0.901 17 C 0.036 3.964 18 N -0.785 5.785 19 Si 0.991 3.009 20 H -0.253 1.253 21 H -0.262 1.262 22 H -0.260 1.260 23 C -0.190 4.190 24 C 0.064 3.936 25 Cl -0.077 7.077 26 H 0.058 0.942 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.059 0.941 34 H 0.386 0.614 35 H 0.074 0.926 36 H 0.078 0.922 37 H 0.422 0.578 38 H 0.133 0.867 39 H 0.121 0.879 40 H 0.302 0.698 41 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.344 -2.021 2.892 9.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.188 4.188 3 C 0.087 3.913 4 C -0.204 4.204 5 O -0.369 6.369 6 C -0.042 4.042 7 N -0.862 5.862 8 S 2.816 3.184 9 O -0.979 6.979 10 O -0.992 6.992 11 C -0.899 4.899 12 C -0.016 4.016 13 C -0.271 4.271 14 C 0.110 3.890 15 C -0.473 4.473 16 H 0.117 0.883 17 C -0.185 4.185 18 N -0.407 5.407 19 Si 0.810 3.190 20 H -0.176 1.176 21 H -0.187 1.187 22 H -0.185 1.185 23 C -0.211 4.211 24 C 0.036 3.964 25 Cl -0.048 7.048 26 H 0.077 0.923 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.092 0.908 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.098 0.902 33 H 0.078 0.922 34 H 0.235 0.765 35 H 0.092 0.908 36 H 0.097 0.903 37 H 0.259 0.741 38 H 0.151 0.849 39 H 0.139 0.861 40 H 0.114 0.886 41 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -9.444 -1.612 3.298 10.132 hybrid contribution 0.631 -0.966 -0.741 1.371 sum -8.813 -2.578 2.557 9.532 Atomic orbital electron populations 1.21717 0.93906 1.02002 1.02506 1.22160 0.98090 0.95101 1.03428 1.21448 0.90259 0.93263 0.86329 1.21872 1.02141 1.00504 0.95838 1.86485 1.76710 1.57959 1.15753 1.22860 0.96590 0.81869 1.02903 1.55128 1.25955 1.14338 1.90790 1.00458 0.72564 0.71840 0.73579 1.93500 1.82501 1.73369 1.48543 1.93452 1.86243 1.31472 1.88051 1.29506 1.31161 1.00527 1.28657 1.20452 0.91650 0.98182 0.91292 1.21343 1.09100 0.94753 1.01866 1.18075 0.88138 0.91668 0.91087 1.20333 1.13242 1.02678 1.11057 0.88258 1.27019 0.96563 0.97493 0.97456 1.69816 1.18513 1.18046 1.34307 0.85002 0.78548 0.77984 0.77494 1.17592 1.18669 1.18481 1.21271 1.04525 1.00293 0.94976 1.20208 0.95653 0.89147 0.91385 1.98302 1.73842 1.69932 1.62720 0.92286 0.92079 0.91987 0.90826 0.90886 0.90687 0.90177 0.92168 0.76511 0.90767 0.90348 0.74060 0.84886 0.86120 0.88639 0.85835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.38 9.32 71.98 0.67 -1.71 16 2 C -0.15 -2.88 5.20 30.59 0.16 -2.72 16 3 C 0.13 2.92 0.78 -10.79 -0.01 2.91 16 4 C -0.15 -3.14 8.18 71.99 0.59 -2.56 16 5 O -0.56 -12.43 12.38 -148.98 -1.84 -14.27 16 6 C 0.08 2.40 3.21 86.38 0.28 2.68 16 7 N -1.10 -34.03 5.72 -187.48 -1.07 -35.11 16 8 S 2.72 105.35 5.44 -56.49 -0.31 105.04 16 9 O -0.99 -41.88 15.95 -128.00 -2.04 -43.93 16 10 O -1.00 -41.78 16.94 -128.00 -2.17 -43.95 16 11 C -0.81 -35.15 5.91 22.48 0.13 -35.02 16 12 C 0.00 0.18 9.52 22.22 0.21 0.39 16 13 C -0.25 -11.41 9.79 22.73 0.22 -11.19 16 14 C 0.11 5.60 5.58 -21.29 -0.12 5.49 16 15 C -0.45 -20.84 9.05 23.46 0.21 -20.63 16 16 H 0.10 4.34 7.91 -2.91 -0.02 4.32 16 17 C 0.04 1.54 5.14 85.26 0.44 1.97 16 18 N -0.78 -35.13 10.95 21.83 0.24 -34.89 16 19 Si 0.99 32.16 29.59 68.60 2.03 34.19 16 20 H -0.25 -8.05 7.11 99.48 0.71 -7.34 16 21 H -0.26 -8.31 7.11 99.48 0.71 -7.60 16 22 H -0.26 -8.07 7.11 99.48 0.71 -7.36 16 23 C -0.19 -9.23 8.47 22.75 0.19 -9.03 16 24 C 0.06 2.89 6.08 22.27 0.14 3.02 16 25 Cl -0.08 -2.92 20.52 -2.72 -0.06 -2.98 16 26 H 0.06 0.99 7.82 -2.39 -0.02 0.97 16 27 H 0.06 0.98 6.34 -2.39 -0.02 0.96 16 28 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.07 1.30 8.14 -2.39 -0.02 1.29 16 31 H 0.07 1.59 8.14 -2.38 -0.02 1.57 16 32 H 0.08 1.50 6.34 -2.39 -0.02 1.49 16 33 H 0.06 1.32 6.60 -2.39 -0.02 1.30 16 34 H 0.39 6.62 9.04 -74.06 -0.67 5.95 16 35 H 0.07 2.30 6.13 -2.39 -0.01 2.28 16 36 H 0.08 2.30 5.86 -2.38 -0.01 2.29 16 37 H 0.42 11.48 7.08 -96.75 -0.69 10.79 16 38 H 0.13 5.27 7.31 -2.91 -0.02 5.24 16 39 H 0.12 4.97 8.06 -2.91 -0.02 4.94 16 40 H 0.30 11.92 8.30 -92.71 -0.77 11.15 16 41 H 0.12 6.13 6.15 -2.91 -0.02 6.11 16 Total: -1.00 -59.24 350.58 -2.37 -61.60 By element: Atomic # 1 Polarization: 40.94 SS G_CDS: -0.26 Total: 40.68 kcal Atomic # 6 Polarization: -69.50 SS G_CDS: 3.11 Total: -66.39 kcal Atomic # 7 Polarization: -69.17 SS G_CDS: -0.83 Total: -70.00 kcal Atomic # 8 Polarization: -96.10 SS G_CDS: -6.05 Total: -102.15 kcal Atomic # 14 Polarization: 32.16 SS G_CDS: 2.03 Total: 34.19 kcal Atomic # 16 Polarization: 105.35 SS G_CDS: -0.31 Total: 105.04 kcal Atomic # 17 Polarization: -2.92 SS G_CDS: -0.06 Total: -2.98 kcal Total: -59.24 -2.37 -61.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451231266.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.190 kcal (2) G-P(sol) polarization free energy of solvation -59.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds