Wall clock time and date at job start Wed Apr 1 2020 04:58:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.47202 * 2 1 4 4 C 1.52999 * 109.46576 * 60.00149 * 3 2 1 5 5 O 1.42897 * 109.47245 * 300.00443 * 3 2 1 6 6 C 1.52996 * 109.47253 * 180.02562 * 3 2 1 7 7 N 1.46500 * 109.47232 * 185.00299 * 6 3 2 8 8 S 1.65598 * 120.00114 * 164.99851 * 7 6 3 9 9 O 1.42102 * 106.40118 * 311.46415 * 8 7 6 10 10 O 1.42097 * 106.40108 * 178.53692 * 8 7 6 11 11 C 1.76209 * 107.21521 * 64.99912 * 8 7 6 12 12 C 1.38634 * 119.75091 * 114.99959 * 11 8 7 13 13 C 1.37608 * 120.25697 * 180.27525 * 12 11 8 14 14 C 1.40741 * 119.77169 * 359.47631 * 13 12 11 15 15 C 1.41395 * 120.23637 * 180.24784 * 14 13 12 16 16 H 1.08004 * 120.00385 * 330.46335 * 15 14 13 17 17 C 1.39942 * 119.99950 * 150.46751 * 15 14 13 18 18 N 1.30821 * 120.00248 * 161.72626 * 17 15 14 19 19 Si 1.86801 * 120.00026 * 341.72360 * 17 15 14 20 20 H 1.48502 * 109.47007 * 95.40986 * 19 17 15 21 21 H 1.48499 * 109.47327 * 215.41369 * 19 17 15 22 22 H 1.48500 * 109.46913 * 335.41682 * 19 17 15 23 23 C 1.40673 * 119.52434 * 0.49789 * 14 13 12 24 24 C 1.37755 * 119.73007 * 359.75479 * 23 14 13 25 25 Cl 1.73608 * 119.88881 * 179.97438 * 24 23 14 26 26 H 1.08998 * 109.47055 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.46629 * 299.99371 * 1 2 3 28 28 H 1.08994 * 109.47120 * 59.99601 * 1 2 3 29 29 H 1.09000 * 109.46972 * 240.00004 * 2 1 3 30 30 H 1.08994 * 109.47120 * 120.00399 * 2 1 3 31 31 H 1.09008 * 109.46947 * 180.02562 * 4 3 2 32 32 H 1.08994 * 109.47588 * 299.99749 * 4 3 2 33 33 H 1.09007 * 109.47387 * 60.00153 * 4 3 2 34 34 H 0.96704 * 113.99694 * 299.99913 * 5 3 2 35 35 H 1.09002 * 109.47161 * 65.00174 * 6 3 2 36 36 H 1.09005 * 109.46901 * 305.00588 * 6 3 2 37 37 H 0.96996 * 119.99902 * 345.00291 * 7 6 3 38 38 H 1.07998 * 119.87450 * 0.02562 * 12 11 8 39 39 H 1.08001 * 120.11020 * 179.72354 * 13 12 11 40 40 H 0.97004 * 120.00355 * 179.97438 * 18 17 15 41 41 H 1.07999 * 120.13437 * 179.77232 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.5301 2.1636 1.2493 5 8 1.5637 2.1162 -1.1667 6 6 3.5700 1.4425 -0.0006 7 7 4.0584 2.8184 0.1198 8 16 5.6406 3.1037 0.5168 9 8 5.9256 2.2853 1.6430 10 8 5.8053 4.5151 0.5200 11 6 6.6291 2.4904 -0.8067 12 6 7.3829 3.3707 -1.5675 13 6 8.1542 2.9038 -2.6071 14 6 8.1848 1.5255 -2.8904 15 6 8.9780 1.0344 -3.9529 16 1 9.1710 1.6560 -4.8148 17 6 9.5128 -0.2571 -3.8879 18 7 9.9311 -0.8476 -4.9777 19 14 9.6296 -1.1381 -2.2448 20 1 8.4427 -2.0127 -2.0666 21 1 10.8629 -1.9646 -2.2127 22 1 9.6758 -0.1372 -1.1487 23 6 7.4167 0.6406 -2.1121 24 6 6.6476 1.1304 -1.0794 25 17 5.6975 0.0421 -0.1167 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3632 0.5137 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 1.8930 3.1915 1.2491 32 1 0.4401 2.1637 1.2493 33 1 1.8934 1.6497 2.1393 34 1 1.8490 1.7126 -1.9979 35 1 3.9330 1.0084 -0.9323 36 1 3.9337 0.8528 0.8409 37 1 3.4550 3.5624 -0.0329 38 1 7.3617 4.4275 -1.3460 39 1 8.7370 3.5922 -3.2011 40 1 10.3022 -1.7427 -4.9326 41 1 7.4300 -0.4185 -2.3231 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451231268.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:58:29 Heat of formation + Delta-G solvation = -118.818462 kcal Electronic energy + Delta-G solvation = -27198.229301 eV Core-core repulsion = 23230.591247 eV Total energy + Delta-G solvation = -3967.638054 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.079 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.02021 -38.20944 -36.70283 -36.04771 -35.24360 -34.30251 -34.13658 -33.18025 -31.05702 -29.89121 -29.31004 -26.77417 -25.99984 -23.28950 -22.23456 -21.36437 -20.42913 -19.04924 -18.01683 -17.52769 -17.25975 -16.51249 -15.87746 -15.70222 -15.36283 -14.97730 -14.71177 -14.66435 -14.05379 -13.94879 -13.54498 -13.07788 -13.04324 -12.98023 -12.61066 -12.48509 -12.32853 -12.24204 -11.86616 -11.73318 -11.62096 -11.52339 -11.45663 -11.24519 -11.18308 -11.04006 -10.99812 -10.73519 -10.62027 -10.36865 -10.14113 -10.00801 -9.61609 -9.49522 -9.09049 -8.33273 -8.00617 -7.50252 -5.11346 1.06862 1.74650 2.26076 2.55589 2.82515 2.93827 3.03796 3.52189 3.62698 3.92355 4.16993 4.31011 4.56999 4.68994 4.77750 4.87685 5.05042 5.17635 5.30411 5.46197 5.55867 5.64534 5.68082 5.73912 5.79022 5.85482 5.90153 6.10690 6.11623 6.13405 6.20588 6.22546 6.28914 6.59960 6.71205 6.85879 7.04845 7.27044 7.30969 7.60037 7.60281 7.77196 8.07416 8.21376 9.47381 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.013927 B = 0.004336 C = 0.003807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2010.035301 B = 6456.263665 C = 7352.390993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.150 4.150 3 C 0.123 3.877 4 C -0.141 4.141 5 O -0.555 6.555 6 C 0.088 3.912 7 N -1.114 6.114 8 S 2.699 3.301 9 O -0.968 6.968 10 O -0.982 6.982 11 C -0.793 4.793 12 C 0.013 3.987 13 C -0.218 4.218 14 C 0.118 3.882 15 C -0.403 4.403 16 H 0.105 0.895 17 C 0.081 3.919 18 N -0.768 5.768 19 Si 0.905 3.095 20 H -0.259 1.259 21 H -0.280 1.280 22 H -0.237 1.237 23 C -0.239 4.239 24 C 0.096 3.904 25 Cl -0.093 7.093 26 H 0.051 0.949 27 H 0.056 0.944 28 H 0.060 0.940 29 H 0.069 0.931 30 H 0.073 0.927 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.071 0.929 34 H 0.377 0.623 35 H 0.077 0.923 36 H 0.089 0.911 37 H 0.415 0.585 38 H 0.123 0.877 39 H 0.114 0.886 40 H 0.297 0.703 41 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.178 -0.629 5.774 13.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.189 4.189 3 C 0.080 3.920 4 C -0.198 4.198 5 O -0.361 6.361 6 C -0.039 4.039 7 N -0.873 5.873 8 S 2.794 3.206 9 O -0.958 6.958 10 O -0.972 6.972 11 C -0.887 4.887 12 C -0.007 4.007 13 C -0.238 4.238 14 C 0.113 3.887 15 C -0.428 4.428 16 H 0.123 0.877 17 C -0.144 4.144 18 N -0.389 5.389 19 Si 0.729 3.271 20 H -0.185 1.185 21 H -0.206 1.206 22 H -0.159 1.159 23 C -0.260 4.260 24 C 0.069 3.931 25 Cl -0.064 7.064 26 H 0.070 0.930 27 H 0.075 0.925 28 H 0.080 0.920 29 H 0.087 0.913 30 H 0.091 0.909 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.090 0.910 34 H 0.225 0.775 35 H 0.095 0.905 36 H 0.107 0.893 37 H 0.250 0.750 38 H 0.141 0.859 39 H 0.132 0.868 40 H 0.108 0.892 41 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -11.992 -0.295 6.923 13.850 hybrid contribution 0.310 -1.170 -0.739 1.418 sum -11.682 -1.465 6.184 13.299 Atomic orbital electron populations 1.21721 0.94938 1.01261 1.02526 1.22162 0.97241 0.96298 1.03179 1.21495 0.91592 0.91774 0.87097 1.21786 1.01609 1.01256 0.95153 1.86509 1.76724 1.57209 1.15669 1.22767 0.94595 0.83198 1.03332 1.55482 1.29218 1.13050 1.89511 1.01223 0.72219 0.72795 0.74380 1.93544 1.83592 1.70076 1.48602 1.93497 1.85553 1.30372 1.87813 1.29230 1.29602 0.99709 1.30146 1.20258 0.91100 0.97196 0.92127 1.21107 1.05905 0.95480 1.01296 1.17765 0.89324 0.91894 0.89685 1.19892 1.22523 0.97944 1.02482 0.87735 1.26400 0.92187 0.96604 0.99221 1.69655 1.25290 1.13926 1.29994 0.86348 0.78329 0.80315 0.82060 1.18464 1.20622 1.15927 1.20987 1.04317 0.99625 1.01030 1.20024 0.93166 0.88328 0.91630 1.98329 1.70016 1.66848 1.71230 0.92997 0.92454 0.92049 0.91258 0.90870 0.91641 0.91623 0.91032 0.77508 0.90478 0.89317 0.74993 0.85914 0.86770 0.89248 0.86559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 9.41 37.16 0.35 -0.90 16 2 C -0.15 -1.42 5.17 -26.73 -0.14 -1.56 16 3 C 0.12 1.34 0.75 -90.62 -0.07 1.27 16 4 C -0.14 -1.48 8.27 37.16 0.31 -1.17 16 5 O -0.56 -6.06 12.11 -35.23 -0.43 -6.49 16 6 C 0.09 1.18 3.24 -4.04 -0.01 1.17 16 7 N -1.11 -16.28 5.40 -10.61 -0.06 -16.34 16 8 S 2.70 49.85 5.44 -107.50 -0.58 49.27 16 9 O -0.97 -19.82 15.94 -57.17 -0.91 -20.73 16 10 O -0.98 -19.68 16.94 -57.17 -0.97 -20.65 16 11 C -0.79 -16.24 5.91 -39.26 -0.23 -16.47 16 12 C 0.01 0.27 9.52 -39.67 -0.38 -0.11 16 13 C -0.22 -4.64 9.79 -38.87 -0.38 -5.02 16 14 C 0.12 2.70 5.10 -106.83 -0.55 2.15 16 15 C -0.40 -9.54 9.57 -37.74 -0.36 -9.90 16 16 H 0.10 2.53 8.06 -52.48 -0.42 2.11 16 17 C 0.08 1.87 5.40 -17.34 -0.09 1.77 16 18 N -0.77 -17.83 13.93 55.55 0.77 -17.06 16 19 Si 0.91 18.79 24.52 -169.99 -4.17 14.62 16 20 H -0.26 -5.21 6.71 56.52 0.38 -4.83 16 21 H -0.28 -5.53 7.11 56.52 0.40 -5.12 16 22 H -0.24 -5.19 6.86 56.52 0.39 -4.80 16 23 C -0.24 -5.32 6.95 -38.84 -0.27 -5.59 16 24 C 0.10 2.02 6.08 -39.58 -0.24 1.78 16 25 Cl -0.09 -1.67 20.52 -51.86 -1.06 -2.74 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 27 H 0.06 0.47 6.43 -51.93 -0.33 0.14 16 28 H 0.06 0.54 7.68 -51.93 -0.40 0.14 16 29 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.06 0.71 6.89 -51.92 -0.36 0.35 16 32 H 0.06 0.62 6.43 -51.93 -0.33 0.29 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.38 3.23 9.04 45.56 0.41 3.64 16 35 H 0.08 1.06 6.14 -51.93 -0.32 0.74 16 36 H 0.09 1.26 5.86 -51.93 -0.30 0.95 16 37 H 0.42 5.38 7.58 -34.47 -0.26 5.12 16 38 H 0.12 2.28 7.31 -52.49 -0.38 1.89 16 39 H 0.11 2.21 8.06 -52.49 -0.42 1.79 16 40 H 0.30 6.15 8.30 -40.82 -0.34 5.81 16 41 H 0.12 2.54 4.73 -52.49 -0.25 2.30 16 LS Contribution 345.73 15.07 5.21 5.21 Total: -1.00 -27.77 345.73 -8.50 -36.26 By element: Atomic # 1 Polarization: 15.46 SS G_CDS: -4.24 Total: 11.23 kcal Atomic # 6 Polarization: -30.52 SS G_CDS: -2.06 Total: -32.58 kcal Atomic # 7 Polarization: -34.11 SS G_CDS: 0.72 Total: -33.39 kcal Atomic # 8 Polarization: -45.57 SS G_CDS: -2.31 Total: -47.88 kcal Atomic # 14 Polarization: 18.79 SS G_CDS: -4.17 Total: 14.62 kcal Atomic # 16 Polarization: 49.85 SS G_CDS: -0.58 Total: 49.27 kcal Atomic # 17 Polarization: -1.67 SS G_CDS: -1.06 Total: -2.74 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -27.77 -8.50 -36.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451231268.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.554 kcal (2) G-P(sol) polarization free energy of solvation -27.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds