Wall clock time and date at job start Wed Apr 1 2020 04:58:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.47202 * 2 1 4 4 C 1.52999 * 109.46576 * 60.00149 * 3 2 1 5 5 O 1.42897 * 109.47245 * 300.00443 * 3 2 1 6 6 C 1.52996 * 109.47253 * 180.02562 * 3 2 1 7 7 N 1.46500 * 109.47232 * 185.00299 * 6 3 2 8 8 S 1.65598 * 120.00114 * 164.99851 * 7 6 3 9 9 O 1.42102 * 106.40118 * 311.46415 * 8 7 6 10 10 O 1.42097 * 106.40108 * 178.53692 * 8 7 6 11 11 C 1.76209 * 107.21521 * 64.99912 * 8 7 6 12 12 C 1.38634 * 119.75091 * 114.99959 * 11 8 7 13 13 C 1.37608 * 120.25697 * 180.27525 * 12 11 8 14 14 C 1.40741 * 119.77169 * 359.47631 * 13 12 11 15 15 C 1.41395 * 120.23637 * 180.24784 * 14 13 12 16 16 H 1.08004 * 120.00385 * 330.46335 * 15 14 13 17 17 C 1.39942 * 119.99950 * 150.46751 * 15 14 13 18 18 N 1.30821 * 120.00248 * 161.72626 * 17 15 14 19 19 Si 1.86801 * 120.00026 * 341.72360 * 17 15 14 20 20 H 1.48502 * 109.47007 * 95.40986 * 19 17 15 21 21 H 1.48499 * 109.47327 * 215.41369 * 19 17 15 22 22 H 1.48500 * 109.46913 * 335.41682 * 19 17 15 23 23 C 1.40673 * 119.52434 * 0.49789 * 14 13 12 24 24 C 1.37755 * 119.73007 * 359.75479 * 23 14 13 25 25 Cl 1.73608 * 119.88881 * 179.97438 * 24 23 14 26 26 H 1.08998 * 109.47055 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.46629 * 299.99371 * 1 2 3 28 28 H 1.08994 * 109.47120 * 59.99601 * 1 2 3 29 29 H 1.09000 * 109.46972 * 240.00004 * 2 1 3 30 30 H 1.08994 * 109.47120 * 120.00399 * 2 1 3 31 31 H 1.09008 * 109.46947 * 180.02562 * 4 3 2 32 32 H 1.08994 * 109.47588 * 299.99749 * 4 3 2 33 33 H 1.09007 * 109.47387 * 60.00153 * 4 3 2 34 34 H 0.96704 * 113.99694 * 299.99913 * 5 3 2 35 35 H 1.09002 * 109.47161 * 65.00174 * 6 3 2 36 36 H 1.09005 * 109.46901 * 305.00588 * 6 3 2 37 37 H 0.96996 * 119.99902 * 345.00291 * 7 6 3 38 38 H 1.07998 * 119.87450 * 0.02562 * 12 11 8 39 39 H 1.08001 * 120.11020 * 179.72354 * 13 12 11 40 40 H 0.97004 * 120.00355 * 179.97438 * 18 17 15 41 41 H 1.07999 * 120.13437 * 179.77232 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.5301 2.1636 1.2493 5 8 1.5637 2.1162 -1.1667 6 6 3.5700 1.4425 -0.0006 7 7 4.0584 2.8184 0.1198 8 16 5.6406 3.1037 0.5168 9 8 5.9256 2.2853 1.6430 10 8 5.8053 4.5151 0.5200 11 6 6.6291 2.4904 -0.8067 12 6 7.3829 3.3707 -1.5675 13 6 8.1542 2.9038 -2.6071 14 6 8.1848 1.5255 -2.8904 15 6 8.9780 1.0344 -3.9529 16 1 9.1710 1.6560 -4.8148 17 6 9.5128 -0.2571 -3.8879 18 7 9.9311 -0.8476 -4.9777 19 14 9.6296 -1.1381 -2.2448 20 1 8.4427 -2.0127 -2.0666 21 1 10.8629 -1.9646 -2.2127 22 1 9.6758 -0.1372 -1.1487 23 6 7.4167 0.6406 -2.1121 24 6 6.6476 1.1304 -1.0794 25 17 5.6975 0.0421 -0.1167 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3632 0.5137 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 1.8930 3.1915 1.2491 32 1 0.4401 2.1637 1.2493 33 1 1.8934 1.6497 2.1393 34 1 1.8490 1.7126 -1.9979 35 1 3.9330 1.0084 -0.9323 36 1 3.9337 0.8528 0.8409 37 1 3.4550 3.5624 -0.0329 38 1 7.3617 4.4275 -1.3460 39 1 8.7370 3.5922 -3.2011 40 1 10.3022 -1.7427 -4.9326 41 1 7.4300 -0.4185 -2.3231 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451231268.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:58:29 Heat of formation + Delta-G solvation = -139.421442 kcal Electronic energy + Delta-G solvation = -27199.122714 eV Core-core repulsion = 23230.591247 eV Total energy + Delta-G solvation = -3968.531466 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.079 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.99918 -39.81090 -38.26175 -37.61231 -36.82503 -35.84460 -35.43102 -33.98622 -32.76235 -31.55981 -30.15341 -27.83228 -27.63159 -24.15818 -23.90183 -23.04527 -21.32523 -20.46673 -19.73241 -19.01067 -18.61696 -17.68761 -17.43003 -16.91489 -16.44175 -16.31067 -16.20933 -15.92291 -15.49544 -15.17587 -14.99363 -14.74075 -14.60109 -14.39370 -13.69608 -13.49796 -13.49074 -13.21970 -13.12270 -13.06919 -13.05462 -12.92338 -12.76836 -12.70133 -12.56417 -12.46155 -12.21175 -12.20264 -11.83618 -11.78268 -11.63380 -11.27522 -11.17100 -10.64141 -10.38227 -10.03246 -9.63957 -9.22109 -6.88898 -0.43534 0.06584 0.55488 0.94366 1.16569 1.27769 1.36966 1.94858 2.06211 2.30069 2.78378 3.14284 3.34144 3.48573 3.69838 3.88282 3.94906 4.02949 4.35788 4.41656 4.44294 4.56002 4.57142 4.60677 4.71945 4.79798 4.85634 4.92650 4.98588 5.02916 5.09403 5.14312 5.16346 5.17564 5.36885 5.40074 5.49170 5.56674 5.89427 6.01482 6.13721 6.34250 6.46833 6.85556 7.81877 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.013927 B = 0.004336 C = 0.003807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2010.035301 B = 6456.263665 C = 7352.390993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.150 4.150 3 C 0.130 3.870 4 C -0.146 4.146 5 O -0.562 6.562 6 C 0.080 3.920 7 N -1.098 6.098 8 S 2.720 3.280 9 O -0.985 6.985 10 O -0.995 6.995 11 C -0.796 4.796 12 C 0.010 3.990 13 C -0.228 4.228 14 C 0.110 3.890 15 C -0.436 4.436 16 H 0.085 0.915 17 C 0.061 3.939 18 N -0.799 5.799 19 Si 0.940 3.060 20 H -0.248 1.248 21 H -0.263 1.263 22 H -0.257 1.257 23 C -0.254 4.254 24 C 0.089 3.911 25 Cl -0.066 7.066 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.057 0.943 29 H 0.072 0.928 30 H 0.076 0.924 31 H 0.059 0.941 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.387 0.613 35 H 0.075 0.925 36 H 0.083 0.917 37 H 0.426 0.574 38 H 0.143 0.857 39 H 0.127 0.873 40 H 0.307 0.693 41 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.930 -0.874 7.173 15.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.189 4.189 3 C 0.087 3.913 4 C -0.204 4.204 5 O -0.370 6.370 6 C -0.046 4.046 7 N -0.861 5.861 8 S 2.812 3.188 9 O -0.975 6.975 10 O -0.985 6.985 11 C -0.887 4.887 12 C -0.010 4.010 13 C -0.248 4.248 14 C 0.105 3.895 15 C -0.462 4.462 16 H 0.103 0.897 17 C -0.161 4.161 18 N -0.420 5.420 19 Si 0.762 3.238 20 H -0.173 1.173 21 H -0.188 1.188 22 H -0.180 1.180 23 C -0.275 4.275 24 C 0.061 3.939 25 Cl -0.037 7.037 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.076 0.924 29 H 0.091 0.909 30 H 0.095 0.905 31 H 0.078 0.922 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.236 0.764 35 H 0.093 0.907 36 H 0.101 0.899 37 H 0.263 0.737 38 H 0.161 0.839 39 H 0.145 0.855 40 H 0.118 0.882 41 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -13.728 -0.550 8.288 16.045 hybrid contribution 0.680 -0.984 -1.054 1.594 sum -13.048 -1.534 7.234 14.998 Atomic orbital electron populations 1.21695 0.94037 1.01894 1.02493 1.22172 0.97976 0.95165 1.03556 1.21432 0.89530 0.92894 0.87425 1.21861 1.02450 1.00929 0.95119 1.86497 1.76655 1.57610 1.16211 1.22913 0.96713 0.82053 1.02939 1.55117 1.27627 1.14235 1.89095 1.00621 0.72654 0.72009 0.73490 1.93523 1.84365 1.70475 1.49137 1.93476 1.86154 1.31112 1.87780 1.29749 1.29368 0.99768 1.29862 1.20561 0.90475 0.98347 0.91574 1.21361 1.06250 0.95291 1.01856 1.17934 0.89105 0.92792 0.89622 1.19846 1.24817 0.98683 1.02831 0.89665 1.26787 0.91751 0.96699 1.00886 1.69646 1.26634 1.14873 1.30894 0.85834 0.79423 0.79505 0.79017 1.17315 1.18844 1.18032 1.21073 1.04888 0.99725 1.01790 1.20170 0.93053 0.89118 0.91598 1.98336 1.68933 1.66159 1.70255 0.92077 0.92135 0.92416 0.90930 0.90531 0.92161 0.90485 0.90509 0.76358 0.90687 0.89873 0.73680 0.83911 0.85472 0.88194 0.86498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.07 9.41 71.98 0.68 -1.39 16 2 C -0.15 -2.46 5.17 30.60 0.16 -2.30 16 3 C 0.13 2.51 0.75 -10.79 -0.01 2.51 16 4 C -0.15 -2.70 8.27 71.98 0.59 -2.11 16 5 O -0.56 -10.91 12.11 -148.98 -1.80 -12.71 16 6 C 0.08 1.97 3.24 86.38 0.28 2.25 16 7 N -1.10 -29.66 5.40 -187.49 -1.01 -30.67 16 8 S 2.72 95.16 5.44 -56.49 -0.31 94.85 16 9 O -0.99 -38.40 15.94 -128.00 -2.04 -40.44 16 10 O -0.99 -37.81 16.94 -128.00 -2.17 -39.98 16 11 C -0.80 -31.44 5.91 22.48 0.13 -31.31 16 12 C 0.01 0.40 9.52 22.22 0.21 0.62 16 13 C -0.23 -9.65 9.79 22.73 0.22 -9.43 16 14 C 0.11 5.07 5.10 -21.30 -0.11 4.96 16 15 C -0.44 -21.24 9.57 23.46 0.22 -21.01 16 16 H 0.09 4.34 8.06 -2.91 -0.02 4.32 16 17 C 0.06 2.86 5.40 85.26 0.46 3.32 16 18 N -0.80 -37.66 13.93 21.83 0.30 -37.36 16 19 Si 0.94 38.21 24.52 68.60 1.68 39.89 16 20 H -0.25 -9.55 6.71 99.48 0.67 -8.88 16 21 H -0.26 -9.86 7.11 99.48 0.71 -9.16 16 22 H -0.26 -11.17 6.86 99.48 0.68 -10.49 16 23 C -0.25 -11.22 6.95 22.75 0.16 -11.06 16 24 C 0.09 3.60 6.08 22.27 0.14 3.74 16 25 Cl -0.07 -2.25 20.52 -2.72 -0.06 -2.30 16 26 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.06 0.83 6.43 -2.39 -0.02 0.81 16 28 H 0.06 0.88 7.68 -2.39 -0.02 0.86 16 29 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.06 1.16 6.89 -2.38 -0.02 1.15 16 32 H 0.08 1.25 6.43 -2.39 -0.02 1.23 16 33 H 0.08 1.33 8.14 -2.38 -0.02 1.31 16 34 H 0.39 5.75 9.04 -74.05 -0.67 5.08 16 35 H 0.08 1.89 6.14 -2.39 -0.01 1.88 16 36 H 0.08 2.16 5.86 -2.38 -0.01 2.15 16 37 H 0.43 9.99 7.58 -96.75 -0.73 9.26 16 38 H 0.14 5.04 7.31 -2.91 -0.02 5.01 16 39 H 0.13 4.93 8.06 -2.91 -0.02 4.90 16 40 H 0.31 12.80 8.30 -92.70 -0.77 12.03 16 41 H 0.12 5.06 4.73 -2.91 -0.01 5.05 16 Total: -1.00 -57.74 345.73 -2.63 -60.37 By element: Atomic # 1 Polarization: 29.94 SS G_CDS: -0.37 Total: 29.57 kcal Atomic # 6 Polarization: -64.37 SS G_CDS: 3.14 Total: -61.23 kcal Atomic # 7 Polarization: -67.32 SS G_CDS: -0.71 Total: -68.03 kcal Atomic # 8 Polarization: -87.12 SS G_CDS: -6.01 Total: -93.13 kcal Atomic # 14 Polarization: 38.21 SS G_CDS: 1.68 Total: 39.89 kcal Atomic # 16 Polarization: 95.16 SS G_CDS: -0.31 Total: 94.85 kcal Atomic # 17 Polarization: -2.25 SS G_CDS: -0.06 Total: -2.30 kcal Total: -57.74 -2.63 -60.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451231268.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.049 kcal (2) G-P(sol) polarization free energy of solvation -57.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds