Wall clock time and date at job start Wed Apr 1 2020 05:00:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.46987 * 2 1 4 4 H 1.08997 * 109.47307 * 55.49085 * 3 2 1 5 5 C 1.53005 * 109.47187 * 175.49454 * 3 2 1 6 6 C 1.52998 * 109.46997 * 185.00111 * 5 3 2 7 7 O 1.42905 * 109.46706 * 179.97438 * 6 5 3 8 8 N 1.46504 * 109.47133 * 295.49120 * 3 2 1 9 9 S 1.65595 * 120.00110 * 114.10974 * 8 3 2 10 10 O 1.42100 * 106.40290 * 175.46749 * 9 8 3 11 11 O 1.42102 * 106.40131 * 308.38446 * 9 8 3 12 12 C 1.76197 * 107.21750 * 61.92334 * 9 8 3 13 13 C 1.38641 * 119.75606 * 92.92501 * 12 9 8 14 14 C 1.37603 * 120.26164 * 179.76016 * 13 12 9 15 15 C 1.40741 * 119.77402 * 0.51306 * 14 13 12 16 16 C 1.41393 * 120.23786 * 179.76487 * 15 14 13 17 17 H 1.08003 * 119.99729 * 149.39474 * 16 15 14 18 18 C 1.39939 * 120.00147 * 329.39752 * 16 15 14 19 19 N 1.30824 * 119.99819 * 346.95294 * 18 16 15 20 20 Si 1.86798 * 119.99953 * 166.94988 * 18 16 15 21 21 H 1.48495 * 109.47363 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.47122 * 120.00296 * 20 18 16 23 23 H 1.48506 * 109.47484 * 239.99855 * 20 18 16 24 24 C 1.40681 * 119.52027 * 359.74157 * 15 14 13 25 25 C 1.37750 * 119.73592 * 0.02562 * 24 15 14 26 26 Cl 1.73598 * 119.88914 * 179.97438 * 25 24 15 27 27 H 1.08995 * 109.47231 * 185.77576 * 1 2 3 28 28 H 1.08997 * 109.47286 * 305.78340 * 1 2 3 29 29 H 1.08999 * 109.46825 * 65.77881 * 1 2 3 30 30 H 1.08993 * 109.47455 * 240.00116 * 2 1 3 31 31 H 1.09004 * 109.46891 * 119.99513 * 2 1 3 32 32 H 1.08999 * 109.46661 * 304.99852 * 5 3 2 33 33 H 1.08995 * 109.46943 * 64.99644 * 5 3 2 34 34 H 1.08999 * 109.47203 * 299.99408 * 6 5 3 35 35 H 1.08995 * 109.47655 * 59.99969 * 6 5 3 36 36 H 0.96704 * 113.99444 * 179.97438 * 7 6 5 37 37 H 0.96997 * 119.99715 * 294.11152 * 8 3 2 38 38 H 1.08001 * 119.86420 * 0.02562 * 13 12 9 39 39 H 1.08000 * 120.11406 * 180.23316 * 14 13 12 40 40 H 0.97005 * 119.99989 * 179.97438 * 19 18 16 41 41 H 1.08000 * 120.12816 * 180.02562 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6122 1.9791 0.8468 5 6 3.5658 1.4441 0.1133 6 6 4.0664 2.8844 0.2388 7 8 5.4915 2.8857 0.3453 8 7 1.6423 2.1011 -1.2468 9 16 0.5668 3.3598 -1.2118 10 8 0.4715 3.8433 -2.5447 11 8 -0.5557 2.9079 -0.4669 12 6 1.3049 4.6502 -0.2660 13 6 2.0374 5.6390 -0.9047 14 6 2.6141 6.6543 -0.1768 15 6 2.4676 6.6814 1.2227 16 6 3.0602 7.7173 1.9808 17 1 2.5969 8.0475 2.8989 18 6 4.2470 8.3148 1.5417 19 7 4.9435 7.7592 0.5837 20 14 4.8366 9.9057 2.3232 21 1 3.8773 10.3251 3.3763 22 1 6.1751 9.6927 2.9300 23 1 4.9265 10.9637 1.2850 24 6 1.7268 5.6704 1.8618 25 6 1.1539 4.6661 1.1130 26 17 0.2395 3.4163 1.8976 27 1 -0.3633 -1.0224 0.1034 28 1 -0.3634 0.6009 0.8336 29 1 -0.3633 0.4216 -0.9372 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 3.8651 0.8772 0.9949 33 1 3.9966 0.9858 -0.7768 34 1 3.7670 3.4512 -0.6428 35 1 3.6355 3.3426 1.1290 36 1 5.8788 3.7679 0.4277 37 1 2.0089 1.7998 -2.0927 38 1 2.1522 5.6144 -1.9783 39 1 3.1811 7.4254 -0.6772 40 1 5.7659 8.1736 0.2790 41 1 1.6077 5.6818 2.9351 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451234748.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:00:57 Heat of formation + Delta-G solvation = -130.781761 kcal Electronic energy + Delta-G solvation = -27876.191269 eV Core-core repulsion = 23908.034447 eV Total energy + Delta-G solvation = -3968.156821 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.079 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -38.14413 -37.66700 -36.54141 -35.81441 -35.73409 -35.09836 -34.07939 -31.49157 -30.57357 -30.33895 -29.46083 -26.07915 -25.30270 -21.75452 -21.60385 -21.54882 -20.85342 -19.07520 -17.88122 -17.33270 -16.98483 -16.57051 -15.87622 -15.59742 -14.93004 -14.61156 -14.45858 -14.28908 -13.85492 -13.53111 -13.47647 -13.35505 -12.87475 -12.71385 -12.47041 -12.38647 -11.85196 -11.80575 -11.64069 -11.52092 -11.43116 -11.31355 -11.21045 -11.18641 -11.06267 -10.73265 -10.62542 -10.53070 -10.32428 -10.13977 -10.09106 -9.69934 -9.52500 -9.45300 -9.09360 -8.17424 -7.78331 -7.30373 -5.01972 1.19153 1.94351 2.51116 2.78222 2.80305 2.84623 2.88582 3.55990 3.66577 4.06632 4.37230 4.48684 5.04295 5.07773 5.16317 5.19551 5.30002 5.42751 5.55561 5.69283 5.83675 5.86647 5.96147 6.05290 6.09416 6.12469 6.26933 6.34722 6.40926 6.46634 6.56527 6.57811 6.61631 6.66967 6.88582 7.04381 7.27962 7.36108 7.50855 7.66486 8.00531 8.07632 8.27453 8.33291 9.62257 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.015009 B = 0.004438 C = 0.004146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1865.147200 B = 6308.080002 C = 6752.603521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.129 4.129 3 C 0.146 3.854 4 H 0.103 0.897 5 C -0.126 4.126 6 C 0.077 3.923 7 O -0.583 6.583 8 N -1.117 6.117 9 S 2.688 3.312 10 O -0.987 6.987 11 O -0.960 6.960 12 C -0.784 4.784 13 C -0.007 4.007 14 C -0.173 4.173 15 C 0.148 3.852 16 C -0.430 4.430 17 H 0.091 0.909 18 C 0.072 3.928 19 N -0.768 5.768 20 Si 0.919 3.081 21 H -0.256 1.256 22 H -0.269 1.269 23 H -0.267 1.267 24 C -0.220 4.220 25 C 0.083 3.917 26 Cl -0.080 7.080 27 H 0.046 0.954 28 H 0.065 0.935 29 H 0.056 0.944 30 H 0.063 0.937 31 H 0.069 0.931 32 H 0.075 0.925 33 H 0.070 0.930 34 H 0.052 0.948 35 H 0.050 0.950 36 H 0.383 0.617 37 H 0.409 0.591 38 H 0.112 0.888 39 H 0.124 0.876 40 H 0.291 0.709 41 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.227 -7.199 0.009 7.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.168 4.168 3 C 0.039 3.961 4 H 0.120 0.880 5 C -0.165 4.165 6 C -0.001 4.001 7 O -0.389 6.389 8 N -0.873 5.873 9 S 2.784 3.216 10 O -0.977 6.977 11 O -0.950 6.950 12 C -0.879 4.879 13 C -0.027 4.027 14 C -0.193 4.193 15 C 0.144 3.856 16 C -0.457 4.457 17 H 0.109 0.891 18 C -0.150 4.150 19 N -0.390 5.390 20 Si 0.742 3.258 21 H -0.180 1.180 22 H -0.194 1.194 23 H -0.192 1.192 24 C -0.241 4.241 25 C 0.054 3.946 26 Cl -0.051 7.051 27 H 0.065 0.935 28 H 0.084 0.916 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.088 0.912 32 H 0.093 0.907 33 H 0.089 0.911 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.230 0.770 37 H 0.242 0.758 38 H 0.130 0.870 39 H 0.142 0.858 40 H 0.102 0.898 41 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -0.642 -7.899 -0.341 7.933 hybrid contribution 1.202 1.475 0.424 1.950 sum 0.560 -6.424 0.083 6.449 Atomic orbital electron populations 1.21760 0.94792 1.00725 1.03423 1.21857 0.97049 0.95782 1.02092 1.21025 0.93855 0.94386 0.86825 0.87962 1.21878 0.94707 0.96978 1.02982 1.22196 0.80546 0.96319 1.01022 1.86290 1.20886 1.34594 1.97119 1.55819 1.66226 1.51273 1.13977 1.01572 0.73801 0.72963 0.73262 1.93496 1.86488 1.80695 1.37039 1.93608 1.47978 1.80785 1.72583 1.29154 1.31287 1.23450 1.03992 1.20232 0.92295 0.92277 0.97886 1.21340 1.04072 1.00123 0.93779 1.17724 0.86625 0.89173 0.92098 1.19963 1.05192 1.13239 1.07336 0.89096 1.26094 0.96152 0.98598 0.94136 1.69758 1.12009 1.36031 1.21247 0.86047 0.79411 0.80157 0.80139 1.17951 1.19402 1.19182 1.21060 1.08159 0.96539 0.98375 1.20074 0.93265 0.90371 0.90854 1.98341 1.73044 1.52331 1.81359 0.93468 0.91643 0.92454 0.91783 0.91247 0.90652 0.91142 0.92971 0.93146 0.76953 0.75838 0.86993 0.85847 0.89813 0.87017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 8.83 37.16 0.33 -1.64 16 2 C -0.13 -1.54 5.61 -26.73 -0.15 -1.69 16 3 C 0.15 2.06 2.25 -67.93 -0.15 1.90 16 4 H 0.10 1.59 4.43 -51.93 -0.23 1.36 16 5 C -0.13 -1.76 5.26 -26.73 -0.14 -1.90 16 6 C 0.08 1.27 6.57 37.16 0.24 1.51 16 7 O -0.58 -9.66 13.66 -35.23 -0.48 -10.14 16 8 N -1.12 -16.47 4.37 -4.89 -0.02 -16.49 16 9 S 2.69 49.82 5.39 -107.50 -0.58 49.24 16 10 O -0.99 -20.58 17.19 -57.17 -0.98 -21.56 16 11 O -0.96 -18.81 13.05 -57.17 -0.75 -19.55 16 12 C -0.78 -15.90 5.03 -39.25 -0.20 -16.10 16 13 C -0.01 -0.14 9.11 -39.66 -0.36 -0.50 16 14 C -0.17 -3.87 8.65 -38.87 -0.34 -4.21 16 15 C 0.15 3.37 5.51 -106.83 -0.59 2.78 16 16 C -0.43 -9.60 9.04 -37.75 -0.34 -9.94 16 17 H 0.09 1.94 7.88 -52.48 -0.41 1.53 16 18 C 0.07 1.52 5.19 -17.34 -0.09 1.43 16 19 N -0.77 -16.42 11.10 55.55 0.62 -15.80 16 20 Si 0.92 15.84 29.58 -169.99 -5.03 10.82 16 21 H -0.26 -4.42 7.11 56.52 0.40 -4.02 16 22 H -0.27 -4.60 7.11 56.52 0.40 -4.20 16 23 H -0.27 -4.59 7.11 56.52 0.40 -4.18 16 24 C -0.22 -4.73 9.57 -38.84 -0.37 -5.10 16 25 C 0.08 1.69 5.72 -39.58 -0.23 1.46 16 26 Cl -0.08 -1.47 22.83 -51.86 -1.18 -2.65 16 27 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.95 7.99 -51.93 -0.41 0.54 16 29 H 0.06 0.81 7.35 -51.93 -0.38 0.42 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 33 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.05 0.90 6.84 -51.93 -0.36 0.55 16 35 H 0.05 0.91 7.75 -51.93 -0.40 0.51 16 36 H 0.38 5.56 9.12 45.56 0.42 5.97 16 37 H 0.41 5.10 8.96 -34.47 -0.31 4.79 16 38 H 0.11 2.22 7.53 -52.49 -0.40 1.83 16 39 H 0.12 2.82 6.45 -52.49 -0.34 2.48 16 40 H 0.29 5.59 8.30 -40.82 -0.34 5.26 16 41 H 0.11 2.27 8.06 -52.49 -0.42 1.85 16 LS Contribution 356.21 15.07 5.37 5.37 Total: -1.00 -26.44 356.21 -9.92 -36.36 By element: Atomic # 1 Polarization: 20.90 SS G_CDS: -4.50 Total: 16.40 kcal Atomic # 6 Polarization: -29.60 SS G_CDS: -2.38 Total: -31.99 kcal Atomic # 7 Polarization: -32.89 SS G_CDS: 0.60 Total: -32.29 kcal Atomic # 8 Polarization: -49.04 SS G_CDS: -2.21 Total: -51.25 kcal Atomic # 14 Polarization: 15.84 SS G_CDS: -5.03 Total: 10.82 kcal Atomic # 16 Polarization: 49.82 SS G_CDS: -0.58 Total: 49.24 kcal Atomic # 17 Polarization: -1.47 SS G_CDS: -1.18 Total: -2.65 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -26.44 -9.92 -36.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451234748.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.426 kcal (2) G-P(sol) polarization free energy of solvation -26.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds