Wall clock time and date at job start Wed Apr 1 2020 05:00:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.46987 * 2 1 4 4 H 1.08997 * 109.47307 * 55.49085 * 3 2 1 5 5 C 1.53005 * 109.47187 * 175.49454 * 3 2 1 6 6 C 1.52998 * 109.46997 * 185.00111 * 5 3 2 7 7 O 1.42905 * 109.46706 * 179.97438 * 6 5 3 8 8 N 1.46504 * 109.47133 * 295.49120 * 3 2 1 9 9 S 1.65595 * 120.00110 * 114.10974 * 8 3 2 10 10 O 1.42100 * 106.40290 * 175.46749 * 9 8 3 11 11 O 1.42102 * 106.40131 * 308.38446 * 9 8 3 12 12 C 1.76197 * 107.21750 * 61.92334 * 9 8 3 13 13 C 1.38641 * 119.75606 * 92.92501 * 12 9 8 14 14 C 1.37603 * 120.26164 * 179.76016 * 13 12 9 15 15 C 1.40741 * 119.77402 * 0.51306 * 14 13 12 16 16 C 1.41393 * 120.23786 * 179.76487 * 15 14 13 17 17 H 1.08003 * 119.99729 * 149.39474 * 16 15 14 18 18 C 1.39939 * 120.00147 * 329.39752 * 16 15 14 19 19 N 1.30824 * 119.99819 * 346.95294 * 18 16 15 20 20 Si 1.86798 * 119.99953 * 166.94988 * 18 16 15 21 21 H 1.48495 * 109.47363 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.47122 * 120.00296 * 20 18 16 23 23 H 1.48506 * 109.47484 * 239.99855 * 20 18 16 24 24 C 1.40681 * 119.52027 * 359.74157 * 15 14 13 25 25 C 1.37750 * 119.73592 * 0.02562 * 24 15 14 26 26 Cl 1.73598 * 119.88914 * 179.97438 * 25 24 15 27 27 H 1.08995 * 109.47231 * 185.77576 * 1 2 3 28 28 H 1.08997 * 109.47286 * 305.78340 * 1 2 3 29 29 H 1.08999 * 109.46825 * 65.77881 * 1 2 3 30 30 H 1.08993 * 109.47455 * 240.00116 * 2 1 3 31 31 H 1.09004 * 109.46891 * 119.99513 * 2 1 3 32 32 H 1.08999 * 109.46661 * 304.99852 * 5 3 2 33 33 H 1.08995 * 109.46943 * 64.99644 * 5 3 2 34 34 H 1.08999 * 109.47203 * 299.99408 * 6 5 3 35 35 H 1.08995 * 109.47655 * 59.99969 * 6 5 3 36 36 H 0.96704 * 113.99444 * 179.97438 * 7 6 5 37 37 H 0.96997 * 119.99715 * 294.11152 * 8 3 2 38 38 H 1.08001 * 119.86420 * 0.02562 * 13 12 9 39 39 H 1.08000 * 120.11406 * 180.23316 * 14 13 12 40 40 H 0.97005 * 119.99989 * 179.97438 * 19 18 16 41 41 H 1.08000 * 120.12816 * 180.02562 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6122 1.9791 0.8468 5 6 3.5658 1.4441 0.1133 6 6 4.0664 2.8844 0.2388 7 8 5.4915 2.8857 0.3453 8 7 1.6423 2.1011 -1.2468 9 16 0.5668 3.3598 -1.2118 10 8 0.4715 3.8433 -2.5447 11 8 -0.5557 2.9079 -0.4669 12 6 1.3049 4.6502 -0.2660 13 6 2.0374 5.6390 -0.9047 14 6 2.6141 6.6543 -0.1768 15 6 2.4676 6.6814 1.2227 16 6 3.0602 7.7173 1.9808 17 1 2.5969 8.0475 2.8989 18 6 4.2470 8.3148 1.5417 19 7 4.9435 7.7592 0.5837 20 14 4.8366 9.9057 2.3232 21 1 3.8773 10.3251 3.3763 22 1 6.1751 9.6927 2.9300 23 1 4.9265 10.9637 1.2850 24 6 1.7268 5.6704 1.8618 25 6 1.1539 4.6661 1.1130 26 17 0.2395 3.4163 1.8976 27 1 -0.3633 -1.0224 0.1034 28 1 -0.3634 0.6009 0.8336 29 1 -0.3633 0.4216 -0.9372 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 3.8651 0.8772 0.9949 33 1 3.9966 0.9858 -0.7768 34 1 3.7670 3.4512 -0.6428 35 1 3.6355 3.3426 1.1290 36 1 5.8788 3.7679 0.4277 37 1 2.0089 1.7998 -2.0927 38 1 2.1522 5.6144 -1.9783 39 1 3.1811 7.4254 -0.6772 40 1 5.7659 8.1736 0.2790 41 1 1.6077 5.6818 2.9351 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451234748.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:00:56 Heat of formation + Delta-G solvation = -148.565653 kcal Electronic energy + Delta-G solvation = -27876.962436 eV Core-core repulsion = 23908.034447 eV Total energy + Delta-G solvation = -3968.927989 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.079 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.70964 -38.96052 -38.09106 -37.31570 -37.09146 -36.67088 -35.69623 -32.59867 -32.19159 -31.59333 -31.12519 -27.73454 -26.47608 -23.38773 -23.24332 -22.67699 -22.02095 -20.52043 -19.53472 -18.82589 -18.29854 -18.10436 -17.32513 -16.98145 -16.44300 -16.14736 -15.82258 -15.48187 -15.32911 -15.04378 -14.66356 -14.60632 -14.47892 -14.26796 -13.96779 -13.71235 -13.40775 -13.19241 -13.11100 -12.92961 -12.90087 -12.78433 -12.58283 -12.44449 -12.30786 -12.02301 -11.93604 -11.87309 -11.75395 -11.74530 -11.43384 -11.23859 -10.98178 -10.86195 -10.35083 -9.84356 -9.44359 -8.88923 -6.71291 -0.30506 0.30867 0.81984 1.23065 1.38230 1.41636 1.53401 2.11840 2.23295 2.48585 2.92509 3.22487 3.39090 3.62311 4.01389 4.06479 4.12423 4.19700 4.36266 4.42990 4.59295 4.65253 4.73569 4.76830 4.80311 4.89593 4.92236 5.04017 5.08162 5.15254 5.18017 5.19258 5.23067 5.37028 5.48308 5.58501 5.59549 5.82100 5.97876 6.23647 6.39198 6.60758 6.64447 6.74780 8.06700 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.015009 B = 0.004438 C = 0.004146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1865.147200 B = 6308.080002 C = 6752.603521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.124 4.124 3 C 0.143 3.857 4 H 0.087 0.913 5 C -0.119 4.119 6 C 0.077 3.923 7 O -0.588 6.588 8 N -1.103 6.103 9 S 2.708 3.292 10 O -1.009 7.009 11 O -0.969 6.969 12 C -0.790 4.790 13 C -0.009 4.009 14 C -0.188 4.188 15 C 0.128 3.872 16 C -0.458 4.458 17 H 0.092 0.908 18 C 0.041 3.959 19 N -0.791 5.791 20 Si 0.986 3.014 21 H -0.257 1.257 22 H -0.263 1.263 23 H -0.264 1.264 24 C -0.235 4.235 25 C 0.083 3.917 26 Cl -0.061 7.061 27 H 0.068 0.932 28 H 0.046 0.954 29 H 0.043 0.957 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.086 0.914 34 H 0.040 0.960 35 H 0.028 0.972 36 H 0.389 0.611 37 H 0.422 0.578 38 H 0.120 0.880 39 H 0.113 0.887 40 H 0.300 0.700 41 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.729 -8.540 0.101 8.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C 0.036 3.964 4 H 0.105 0.895 5 C -0.158 4.158 6 C -0.001 4.001 7 O -0.395 6.395 8 N -0.863 5.863 9 S 2.802 3.198 10 O -0.999 6.999 11 O -0.959 6.959 12 C -0.882 4.882 13 C -0.029 4.029 14 C -0.209 4.209 15 C 0.124 3.876 16 C -0.485 4.485 17 H 0.110 0.890 18 C -0.180 4.180 19 N -0.413 5.413 20 Si 0.806 3.194 21 H -0.180 1.180 22 H -0.187 1.187 23 H -0.188 1.188 24 C -0.256 4.256 25 C 0.054 3.946 26 Cl -0.031 7.031 27 H 0.086 0.914 28 H 0.065 0.935 29 H 0.063 0.937 30 H 0.103 0.897 31 H 0.107 0.893 32 H 0.107 0.893 33 H 0.105 0.895 34 H 0.058 0.942 35 H 0.047 0.953 36 H 0.237 0.763 37 H 0.258 0.742 38 H 0.138 0.862 39 H 0.131 0.869 40 H 0.111 0.889 41 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -0.136 -9.235 -0.251 9.240 hybrid contribution 1.022 1.774 0.376 2.082 sum 0.886 -7.461 0.126 7.515 Atomic orbital electron populations 1.21780 0.95742 1.01601 1.01901 1.21857 0.96092 0.94176 1.04133 1.21162 0.94005 0.95624 0.85616 0.89540 1.21859 0.94326 0.95243 1.04406 1.22193 0.80456 0.97998 0.99404 1.86271 1.20921 1.35294 1.97032 1.55449 1.65792 1.49850 1.15237 1.00949 0.73808 0.72830 0.72230 1.93462 1.86992 1.81431 1.38063 1.93595 1.48784 1.80777 1.72712 1.29476 1.30434 1.24084 1.04237 1.20353 0.92078 0.92139 0.98293 1.21294 1.05012 1.00607 0.93943 1.17972 0.87272 0.89885 0.92446 1.20202 1.06224 1.14203 1.07861 0.88999 1.26815 0.95681 1.01031 0.94427 1.69778 1.12497 1.37167 1.21897 0.85064 0.78881 0.76276 0.79168 1.18022 1.18724 1.18815 1.21162 1.08786 0.96882 0.98752 1.20136 0.92896 0.90469 0.91051 1.98342 1.72446 1.51274 1.81086 0.91351 0.93514 0.93735 0.89667 0.89261 0.89300 0.89497 0.94171 0.95330 0.76269 0.74155 0.86201 0.86924 0.88918 0.86568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.65 8.83 71.98 0.64 -3.01 16 2 C -0.12 -2.54 5.61 30.59 0.17 -2.37 16 3 C 0.14 3.71 2.25 44.99 0.10 3.81 16 4 H 0.09 2.57 4.43 -2.39 -0.01 2.56 16 5 C -0.12 -3.04 5.26 30.60 0.16 -2.88 16 6 C 0.08 2.50 6.57 71.98 0.47 2.98 16 7 O -0.59 -19.04 13.66 -148.98 -2.04 -21.08 16 8 N -1.10 -30.67 4.37 -169.38 -0.74 -31.41 16 9 S 2.71 98.42 5.39 -56.49 -0.30 98.11 16 10 O -1.01 -41.43 17.19 -128.00 -2.20 -43.63 16 11 O -0.97 -37.13 13.05 -128.00 -1.67 -38.80 16 12 C -0.79 -32.17 5.03 22.49 0.11 -32.06 16 13 C -0.01 -0.37 9.11 22.22 0.20 -0.16 16 14 C -0.19 -8.71 8.65 22.73 0.20 -8.51 16 15 C 0.13 6.02 5.51 -21.29 -0.12 5.90 16 16 C -0.46 -20.95 9.04 23.46 0.21 -20.74 16 17 H 0.09 4.03 7.88 -2.91 -0.02 4.01 16 18 C 0.04 1.71 5.19 85.26 0.44 2.16 16 19 N -0.79 -34.27 11.10 21.82 0.24 -34.03 16 20 Si 0.99 32.23 29.58 68.60 2.03 34.26 16 21 H -0.26 -8.34 7.11 99.48 0.71 -7.63 16 22 H -0.26 -8.27 7.11 99.48 0.71 -7.56 16 23 H -0.26 -8.42 7.11 99.48 0.71 -7.71 16 24 C -0.23 -10.33 9.57 22.75 0.22 -10.11 16 25 C 0.08 3.40 5.72 22.27 0.13 3.53 16 26 Cl -0.06 -2.20 22.83 -2.72 -0.06 -2.26 16 27 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 28 H 0.05 1.28 7.99 -2.39 -0.02 1.26 16 29 H 0.04 1.16 7.35 -2.39 -0.02 1.14 16 30 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.09 1.53 8.14 -2.38 -0.02 1.51 16 32 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 33 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 34 H 0.04 1.38 6.84 -2.39 -0.02 1.36 16 35 H 0.03 1.04 7.75 -2.39 -0.02 1.02 16 36 H 0.39 11.30 9.12 -74.05 -0.68 10.63 16 37 H 0.42 9.59 8.96 -96.75 -0.87 8.72 16 38 H 0.12 4.84 7.53 -2.91 -0.02 4.82 16 39 H 0.11 5.36 6.45 -2.91 -0.02 5.34 16 40 H 0.30 11.57 8.30 -92.70 -0.77 10.80 16 41 H 0.12 4.85 8.06 -2.91 -0.02 4.82 16 Total: -1.00 -56.26 356.21 -2.26 -58.52 By element: Atomic # 1 Polarization: 42.23 SS G_CDS: -0.46 Total: 41.78 kcal Atomic # 6 Polarization: -64.40 SS G_CDS: 2.94 Total: -61.46 kcal Atomic # 7 Polarization: -64.94 SS G_CDS: -0.50 Total: -65.44 kcal Atomic # 8 Polarization: -97.61 SS G_CDS: -5.91 Total: -103.51 kcal Atomic # 14 Polarization: 32.23 SS G_CDS: 2.03 Total: 34.26 kcal Atomic # 16 Polarization: 98.42 SS G_CDS: -0.30 Total: 98.11 kcal Atomic # 17 Polarization: -2.20 SS G_CDS: -0.06 Total: -2.26 kcal Total: -56.26 -2.26 -58.52 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451234748.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.042 kcal (2) G-P(sol) polarization free energy of solvation -56.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds