Wall clock time and date at job start Wed Apr 1 2020 05:00:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 C 1.53001 * 109.46987 * 2 1
4 4 H 1.08997 * 109.47307 * 55.49085 * 3 2 1
5 5 C 1.53005 * 109.47187 * 175.49454 * 3 2 1
6 6 C 1.52998 * 109.46997 * 185.00111 * 5 3 2
7 7 O 1.42905 * 109.46706 * 179.97438 * 6 5 3
8 8 N 1.46504 * 109.47133 * 295.49120 * 3 2 1
9 9 S 1.65595 * 120.00110 * 114.10974 * 8 3 2
10 10 O 1.42100 * 106.40290 * 175.46749 * 9 8 3
11 11 O 1.42102 * 106.40131 * 308.38446 * 9 8 3
12 12 C 1.76197 * 107.21750 * 61.92334 * 9 8 3
13 13 C 1.38641 * 119.75606 * 92.92501 * 12 9 8
14 14 C 1.37603 * 120.26164 * 179.76016 * 13 12 9
15 15 C 1.40741 * 119.77402 * 0.51306 * 14 13 12
16 16 C 1.41393 * 120.23786 * 179.76487 * 15 14 13
17 17 H 1.08003 * 119.99729 * 149.39474 * 16 15 14
18 18 C 1.39939 * 120.00147 * 329.39752 * 16 15 14
19 19 N 1.30824 * 119.99819 * 346.95294 * 18 16 15
20 20 Si 1.86798 * 119.99953 * 166.94988 * 18 16 15
21 21 H 1.48495 * 109.47363 * 0.02562 * 20 18 16
22 22 H 1.48503 * 109.47122 * 120.00296 * 20 18 16
23 23 H 1.48506 * 109.47484 * 239.99855 * 20 18 16
24 24 C 1.40681 * 119.52027 * 359.74157 * 15 14 13
25 25 C 1.37750 * 119.73592 * 0.02562 * 24 15 14
26 26 Cl 1.73598 * 119.88914 * 179.97438 * 25 24 15
27 27 H 1.08995 * 109.47231 * 185.77576 * 1 2 3
28 28 H 1.08997 * 109.47286 * 305.78340 * 1 2 3
29 29 H 1.08999 * 109.46825 * 65.77881 * 1 2 3
30 30 H 1.08993 * 109.47455 * 240.00116 * 2 1 3
31 31 H 1.09004 * 109.46891 * 119.99513 * 2 1 3
32 32 H 1.08999 * 109.46661 * 304.99852 * 5 3 2
33 33 H 1.08995 * 109.46943 * 64.99644 * 5 3 2
34 34 H 1.08999 * 109.47203 * 299.99408 * 6 5 3
35 35 H 1.08995 * 109.47655 * 59.99969 * 6 5 3
36 36 H 0.96704 * 113.99444 * 179.97438 * 7 6 5
37 37 H 0.96997 * 119.99715 * 294.11152 * 8 3 2
38 38 H 1.08001 * 119.86420 * 0.02562 * 13 12 9
39 39 H 1.08000 * 120.11406 * 180.23316 * 14 13 12
40 40 H 0.97005 * 119.99989 * 179.97438 * 19 18 16
41 41 H 1.08000 * 120.12816 * 180.02562 * 24 15 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0399 1.4425 0.0000
4 1 1.6122 1.9791 0.8468
5 6 3.5658 1.4441 0.1133
6 6 4.0664 2.8844 0.2388
7 8 5.4915 2.8857 0.3453
8 7 1.6423 2.1011 -1.2468
9 16 0.5668 3.3598 -1.2118
10 8 0.4715 3.8433 -2.5447
11 8 -0.5557 2.9079 -0.4669
12 6 1.3049 4.6502 -0.2660
13 6 2.0374 5.6390 -0.9047
14 6 2.6141 6.6543 -0.1768
15 6 2.4676 6.6814 1.2227
16 6 3.0602 7.7173 1.9808
17 1 2.5969 8.0475 2.8989
18 6 4.2470 8.3148 1.5417
19 7 4.9435 7.7592 0.5837
20 14 4.8366 9.9057 2.3232
21 1 3.8773 10.3251 3.3763
22 1 6.1751 9.6927 2.9300
23 1 4.9265 10.9637 1.2850
24 6 1.7268 5.6704 1.8618
25 6 1.1539 4.6661 1.1130
26 17 0.2395 3.4163 1.8976
27 1 -0.3633 -1.0224 0.1034
28 1 -0.3634 0.6009 0.8336
29 1 -0.3633 0.4216 -0.9372
30 1 1.8933 -0.5138 -0.8899
31 1 1.8933 -0.5138 0.8901
32 1 3.8651 0.8772 0.9949
33 1 3.9966 0.9858 -0.7768
34 1 3.7670 3.4512 -0.6428
35 1 3.6355 3.3426 1.1290
36 1 5.8788 3.7679 0.4277
37 1 2.0089 1.7998 -2.0927
38 1 2.1522 5.6144 -1.9783
39 1 3.1811 7.4254 -0.6772
40 1 5.7659 8.1736 0.2790
41 1 1.6077 5.6818 2.9351
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000451234748.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:00:56
Heat of formation + Delta-G solvation = -148.565653 kcal
Electronic energy + Delta-G solvation = -27876.962436 eV
Core-core repulsion = 23908.034447 eV
Total energy + Delta-G solvation = -3968.927989 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 347.079 amu
Computer time = 0.73 seconds
Orbital eigenvalues (eV)
-39.70964 -38.96052 -38.09106 -37.31570 -37.09146 -36.67088 -35.69623 -32.59867
-32.19159 -31.59333 -31.12519 -27.73454 -26.47608 -23.38773 -23.24332 -22.67699
-22.02095 -20.52043 -19.53472 -18.82589 -18.29854 -18.10436 -17.32513 -16.98145
-16.44300 -16.14736 -15.82258 -15.48187 -15.32911 -15.04378 -14.66356 -14.60632
-14.47892 -14.26796 -13.96779 -13.71235 -13.40775 -13.19241 -13.11100 -12.92961
-12.90087 -12.78433 -12.58283 -12.44449 -12.30786 -12.02301 -11.93604 -11.87309
-11.75395 -11.74530 -11.43384 -11.23859 -10.98178 -10.86195 -10.35083 -9.84356
-9.44359 -8.88923 -6.71291 -0.30506 0.30867 0.81984 1.23065 1.38230
1.41636 1.53401 2.11840 2.23295 2.48585 2.92509 3.22487 3.39090
3.62311 4.01389 4.06479 4.12423 4.19700 4.36266 4.42990 4.59295
4.65253 4.73569 4.76830 4.80311 4.89593 4.92236 5.04017 5.08162
5.15254 5.18017 5.19258 5.23067 5.37028 5.48308 5.58501 5.59549
5.82100 5.97876 6.23647 6.39198 6.60758 6.64447 6.74780 8.06700
Molecular weight = 347.08amu
Principal moments of inertia in cm(-1)
A = 0.015009 B = 0.004438 C = 0.004146
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1865.147200 B = 6308.080002 C = 6752.603521
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.153 4.153
2 C -0.124 4.124
3 C 0.143 3.857
4 H 0.087 0.913
5 C -0.119 4.119
6 C 0.077 3.923
7 O -0.588 6.588
8 N -1.103 6.103
9 S 2.708 3.292
10 O -1.009 7.009
11 O -0.969 6.969
12 C -0.790 4.790
13 C -0.009 4.009
14 C -0.188 4.188
15 C 0.128 3.872
16 C -0.458 4.458
17 H 0.092 0.908
18 C 0.041 3.959
19 N -0.791 5.791
20 Si 0.986 3.014
21 H -0.257 1.257
22 H -0.263 1.263
23 H -0.264 1.264
24 C -0.235 4.235
25 C 0.083 3.917
26 Cl -0.061 7.061
27 H 0.068 0.932
28 H 0.046 0.954
29 H 0.043 0.957
30 H 0.085 0.915
31 H 0.089 0.911
32 H 0.088 0.912
33 H 0.086 0.914
34 H 0.040 0.960
35 H 0.028 0.972
36 H 0.389 0.611
37 H 0.422 0.578
38 H 0.120 0.880
39 H 0.113 0.887
40 H 0.300 0.700
41 H 0.116 0.884
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.729 -8.540 0.101 8.571
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.210 4.210
2 C -0.163 4.163
3 C 0.036 3.964
4 H 0.105 0.895
5 C -0.158 4.158
6 C -0.001 4.001
7 O -0.395 6.395
8 N -0.863 5.863
9 S 2.802 3.198
10 O -0.999 6.999
11 O -0.959 6.959
12 C -0.882 4.882
13 C -0.029 4.029
14 C -0.209 4.209
15 C 0.124 3.876
16 C -0.485 4.485
17 H 0.110 0.890
18 C -0.180 4.180
19 N -0.413 5.413
20 Si 0.806 3.194
21 H -0.180 1.180
22 H -0.187 1.187
23 H -0.188 1.188
24 C -0.256 4.256
25 C 0.054 3.946
26 Cl -0.031 7.031
27 H 0.086 0.914
28 H 0.065 0.935
29 H 0.063 0.937
30 H 0.103 0.897
31 H 0.107 0.893
32 H 0.107 0.893
33 H 0.105 0.895
34 H 0.058 0.942
35 H 0.047 0.953
36 H 0.237 0.763
37 H 0.258 0.742
38 H 0.138 0.862
39 H 0.131 0.869
40 H 0.111 0.889
41 H 0.134 0.866
Dipole moment (debyes) X Y Z Total
from point charges -0.136 -9.235 -0.251 9.240
hybrid contribution 1.022 1.774 0.376 2.082
sum 0.886 -7.461 0.126 7.515
Atomic orbital electron populations
1.21780 0.95742 1.01601 1.01901 1.21857 0.96092 0.94176 1.04133
1.21162 0.94005 0.95624 0.85616 0.89540 1.21859 0.94326 0.95243
1.04406 1.22193 0.80456 0.97998 0.99404 1.86271 1.20921 1.35294
1.97032 1.55449 1.65792 1.49850 1.15237 1.00949 0.73808 0.72830
0.72230 1.93462 1.86992 1.81431 1.38063 1.93595 1.48784 1.80777
1.72712 1.29476 1.30434 1.24084 1.04237 1.20353 0.92078 0.92139
0.98293 1.21294 1.05012 1.00607 0.93943 1.17972 0.87272 0.89885
0.92446 1.20202 1.06224 1.14203 1.07861 0.88999 1.26815 0.95681
1.01031 0.94427 1.69778 1.12497 1.37167 1.21897 0.85064 0.78881
0.76276 0.79168 1.18022 1.18724 1.18815 1.21162 1.08786 0.96882
0.98752 1.20136 0.92896 0.90469 0.91051 1.98342 1.72446 1.51274
1.81086 0.91351 0.93514 0.93735 0.89667 0.89261 0.89300 0.89497
0.94171 0.95330 0.76269 0.74155 0.86201 0.86924 0.88918 0.86568
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -3.65 8.83 71.98 0.64 -3.01 16
2 C -0.12 -2.54 5.61 30.59 0.17 -2.37 16
3 C 0.14 3.71 2.25 44.99 0.10 3.81 16
4 H 0.09 2.57 4.43 -2.39 -0.01 2.56 16
5 C -0.12 -3.04 5.26 30.60 0.16 -2.88 16
6 C 0.08 2.50 6.57 71.98 0.47 2.98 16
7 O -0.59 -19.04 13.66 -148.98 -2.04 -21.08 16
8 N -1.10 -30.67 4.37 -169.38 -0.74 -31.41 16
9 S 2.71 98.42 5.39 -56.49 -0.30 98.11 16
10 O -1.01 -41.43 17.19 -128.00 -2.20 -43.63 16
11 O -0.97 -37.13 13.05 -128.00 -1.67 -38.80 16
12 C -0.79 -32.17 5.03 22.49 0.11 -32.06 16
13 C -0.01 -0.37 9.11 22.22 0.20 -0.16 16
14 C -0.19 -8.71 8.65 22.73 0.20 -8.51 16
15 C 0.13 6.02 5.51 -21.29 -0.12 5.90 16
16 C -0.46 -20.95 9.04 23.46 0.21 -20.74 16
17 H 0.09 4.03 7.88 -2.91 -0.02 4.01 16
18 C 0.04 1.71 5.19 85.26 0.44 2.16 16
19 N -0.79 -34.27 11.10 21.82 0.24 -34.03 16
20 Si 0.99 32.23 29.58 68.60 2.03 34.26 16
21 H -0.26 -8.34 7.11 99.48 0.71 -7.63 16
22 H -0.26 -8.27 7.11 99.48 0.71 -7.56 16
23 H -0.26 -8.42 7.11 99.48 0.71 -7.71 16
24 C -0.23 -10.33 9.57 22.75 0.22 -10.11 16
25 C 0.08 3.40 5.72 22.27 0.13 3.53 16
26 Cl -0.06 -2.20 22.83 -2.72 -0.06 -2.26 16
27 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16
28 H 0.05 1.28 7.99 -2.39 -0.02 1.26 16
29 H 0.04 1.16 7.35 -2.39 -0.02 1.14 16
30 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16
31 H 0.09 1.53 8.14 -2.38 -0.02 1.51 16
32 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16
33 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16
34 H 0.04 1.38 6.84 -2.39 -0.02 1.36 16
35 H 0.03 1.04 7.75 -2.39 -0.02 1.02 16
36 H 0.39 11.30 9.12 -74.05 -0.68 10.63 16
37 H 0.42 9.59 8.96 -96.75 -0.87 8.72 16
38 H 0.12 4.84 7.53 -2.91 -0.02 4.82 16
39 H 0.11 5.36 6.45 -2.91 -0.02 5.34 16
40 H 0.30 11.57 8.30 -92.70 -0.77 10.80 16
41 H 0.12 4.85 8.06 -2.91 -0.02 4.82 16
Total: -1.00 -56.26 356.21 -2.26 -58.52
By element:
Atomic # 1 Polarization: 42.23 SS G_CDS: -0.46 Total: 41.78 kcal
Atomic # 6 Polarization: -64.40 SS G_CDS: 2.94 Total: -61.46 kcal
Atomic # 7 Polarization: -64.94 SS G_CDS: -0.50 Total: -65.44 kcal
Atomic # 8 Polarization: -97.61 SS G_CDS: -5.91 Total: -103.51 kcal
Atomic # 14 Polarization: 32.23 SS G_CDS: 2.03 Total: 34.26 kcal
Atomic # 16 Polarization: 98.42 SS G_CDS: -0.30 Total: 98.11 kcal
Atomic # 17 Polarization: -2.20 SS G_CDS: -0.06 Total: -2.26 kcal
Total: -56.26 -2.26 -58.52 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000451234748.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -90.042 kcal
(2) G-P(sol) polarization free energy of solvation -56.262 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.304 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.262 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.524 kcal
(6) G-S(sol) free energy of system = (1) + (5) -148.566 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.73 seconds