Wall clock time and date at job start Wed Apr 1 2020 04:58:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52992 * 109.46861 * 2 1 4 4 C 1.53005 * 109.46861 * 180.02562 * 3 2 1 5 5 H 1.08994 * 109.47415 * 54.99887 * 4 3 2 6 6 O 1.42901 * 109.46988 * 294.99366 * 4 3 2 7 7 C 1.53000 * 109.46981 * 174.99901 * 4 3 2 8 8 N 1.46501 * 109.46955 * 184.99817 * 7 4 3 9 9 S 1.65605 * 119.99901 * 165.00184 * 8 7 4 10 10 O 1.42097 * 106.39951 * 178.54109 * 9 8 7 11 11 O 1.42100 * 106.40159 * 311.45788 * 9 8 7 12 12 C 1.76198 * 107.21860 * 64.99965 * 9 8 7 13 13 C 1.38633 * 119.75528 * 114.73070 * 12 9 8 14 14 C 1.37612 * 120.25829 * 179.76533 * 13 12 9 15 15 C 1.40741 * 119.77382 * 0.49950 * 14 13 12 16 16 C 1.41390 * 120.23864 * 179.76717 * 15 14 13 17 17 H 1.08005 * 119.99766 * 24.38337 * 16 15 14 18 18 C 1.39935 * 120.00322 * 204.37953 * 16 15 14 19 19 N 1.30824 * 120.00005 * 17.86176 * 18 16 15 20 20 Si 1.86803 * 120.00279 * 197.86318 * 18 16 15 21 21 H 1.48499 * 109.47127 * 60.00134 * 20 18 16 22 22 H 1.48503 * 109.46984 * 179.97438 * 20 18 16 23 23 H 1.48494 * 109.47320 * 300.00025 * 20 18 16 24 24 C 1.40678 * 119.52287 * 359.75479 * 15 14 13 25 25 C 1.37755 * 119.73310 * 359.97438 * 24 15 14 26 26 Cl 1.73598 * 119.89117 * 179.97438 * 25 24 15 27 27 H 1.08996 * 109.47518 * 300.00093 * 1 2 3 28 28 H 1.08999 * 109.46788 * 60.00361 * 1 2 3 29 29 H 1.09009 * 109.46703 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46897 * 239.99279 * 2 1 3 31 31 H 1.09007 * 109.46698 * 119.99913 * 2 1 3 32 32 H 1.09002 * 109.47532 * 60.00259 * 3 2 1 33 33 H 1.08999 * 109.47124 * 299.99433 * 3 2 1 34 34 H 0.96697 * 114.00199 * 300.00556 * 6 4 3 35 35 H 1.09005 * 109.47442 * 64.99936 * 7 4 3 36 36 H 1.09001 * 109.47502 * 304.99968 * 7 4 3 37 37 H 0.97001 * 120.00147 * 344.72492 * 8 7 4 38 38 H 1.07995 * 119.87287 * 359.97438 * 13 12 9 39 39 H 1.08006 * 120.11165 * 180.23001 * 14 13 12 40 40 H 0.97003 * 120.00246 * 179.97438 * 19 18 16 41 41 H 1.08002 * 120.13243 * 180.02562 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 -0.0006 5 1 3.9330 0.8532 -0.8426 6 8 4.0468 0.8730 1.2202 7 6 4.0799 2.8795 -0.1264 8 7 5.5399 2.8707 -0.2470 9 16 6.3361 4.2274 -0.7649 10 8 7.7216 3.9131 -0.7411 11 8 5.6591 4.6682 -1.9340 12 6 6.0879 5.4751 0.4541 13 6 7.1684 5.9534 1.1790 14 6 6.9871 6.9312 2.1302 15 6 5.6972 7.4387 2.3737 16 6 5.4990 8.4400 3.3522 17 1 6.3142 9.0910 3.6314 18 6 4.2465 8.5874 3.9588 19 7 3.3723 7.6160 3.8988 20 14 3.8229 10.1712 4.8540 21 1 3.8985 11.3114 3.9055 22 1 2.4468 10.0760 5.4040 23 1 4.7862 10.3856 5.9635 24 6 4.6065 6.9429 1.6364 25 6 4.8117 5.9679 0.6851 26 17 3.4687 5.3526 -0.2267 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0278 -0.0005 30 1 1.8934 -0.5140 -0.8899 31 1 1.8933 -0.5139 0.8901 32 1 1.6767 1.9563 0.8900 33 1 1.6767 1.9562 -0.8900 34 1 3.7618 1.3473 2.0132 35 1 3.7919 3.4461 0.7592 36 1 3.6449 3.3433 -1.0117 37 1 6.0406 2.0716 -0.0198 38 1 8.1569 5.5595 0.9942 39 1 7.8312 7.3048 2.6910 40 1 2.5043 7.7180 4.3196 41 1 3.6125 7.3256 1.8150 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451238703.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:58:40 Heat of formation + Delta-G solvation = -149.884815 kcal Electronic energy + Delta-G solvation = -26620.237939 eV Core-core repulsion = 22651.252746 eV Total energy + Delta-G solvation = -3968.985192 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.079 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.66048 -39.33473 -38.18233 -37.43446 -36.77995 -35.82349 -35.46940 -34.95453 -32.08231 -31.25491 -30.49560 -27.77848 -26.68265 -23.62949 -23.08703 -23.00757 -22.13916 -20.36274 -19.60363 -18.77147 -18.40922 -17.64528 -17.36999 -17.23189 -16.59013 -16.21823 -16.04260 -15.45220 -15.36546 -15.27512 -15.01705 -14.52228 -14.36078 -14.17091 -14.02636 -13.79143 -13.23704 -13.14936 -13.11427 -13.04106 -12.95581 -12.76133 -12.73245 -12.60973 -12.42891 -12.19620 -12.04014 -11.91016 -11.82155 -11.59357 -11.50271 -11.25730 -11.20607 -10.61563 -10.34767 -9.88289 -9.47011 -8.94145 -6.73237 -0.34420 0.30221 0.84728 1.17927 1.36630 1.44140 1.50837 2.09583 2.18780 2.43127 2.86061 3.36754 3.44411 3.56579 3.76545 3.96752 4.08243 4.21704 4.26048 4.32323 4.55819 4.65468 4.67428 4.68882 4.81794 4.89704 4.92705 4.94552 5.05987 5.06711 5.11080 5.23457 5.27036 5.38943 5.40421 5.49294 5.53190 5.79064 5.99644 6.17162 6.30443 6.57180 6.62589 6.80398 7.99616 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.010865 B = 0.004054 C = 0.003249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2576.383192 B = 6905.159165 C = 8614.783106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.116 4.116 3 C -0.150 4.150 4 C 0.107 3.893 5 H 0.109 0.891 6 O -0.566 6.566 7 C 0.077 3.923 8 N -1.103 6.103 9 S 2.721 3.279 10 O -1.001 7.001 11 O -0.989 6.989 12 C -0.806 4.806 13 C 0.004 3.996 14 C -0.251 4.251 15 C 0.115 3.885 16 C -0.448 4.448 17 H 0.100 0.900 18 C 0.036 3.964 19 N -0.784 5.784 20 Si 0.990 3.010 21 H -0.259 1.259 22 H -0.263 1.263 23 H -0.253 1.253 24 C -0.189 4.189 25 C 0.063 3.937 26 Cl -0.076 7.076 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.060 0.940 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.386 0.614 35 H 0.072 0.928 36 H 0.082 0.918 37 H 0.425 0.575 38 H 0.133 0.867 39 H 0.121 0.879 40 H 0.302 0.698 41 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.079 -8.445 -1.343 10.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.154 4.154 3 C -0.189 4.189 4 C 0.046 3.954 5 H 0.127 0.873 6 O -0.373 6.373 7 C -0.050 4.050 8 N -0.864 5.864 9 S 2.815 3.185 10 O -0.992 6.992 11 O -0.979 6.979 12 C -0.899 4.899 13 C -0.015 4.015 14 C -0.272 4.272 15 C 0.110 3.890 16 C -0.474 4.474 17 H 0.118 0.882 18 C -0.185 4.185 19 N -0.406 5.406 20 Si 0.810 3.190 21 H -0.183 1.183 22 H -0.187 1.187 23 H -0.177 1.177 24 C -0.210 4.210 25 C 0.035 3.965 26 Cl -0.047 7.047 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.090 0.910 33 H 0.094 0.906 34 H 0.235 0.765 35 H 0.090 0.910 36 H 0.100 0.900 37 H 0.261 0.739 38 H 0.151 0.849 39 H 0.139 0.861 40 H 0.114 0.886 41 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -5.808 -8.798 -2.592 10.856 hybrid contribution -0.597 1.065 1.412 1.867 sum -6.405 -7.733 -1.180 10.110 Atomic orbital electron populations 1.21786 0.95335 1.02015 1.01872 1.21414 0.96037 0.95444 1.02460 1.22276 0.94287 0.98693 1.03608 1.22191 0.93568 0.91329 0.88278 0.87330 1.86511 1.77447 1.57232 1.16157 1.22900 0.79356 0.99837 1.02900 1.55144 1.15570 1.29414 1.86296 1.00485 0.71665 0.72802 0.73578 1.93454 1.33160 1.84587 1.87967 1.93505 1.75765 1.81955 1.46717 1.29499 0.98367 1.30532 1.31460 1.20450 0.96259 0.93464 0.91369 1.21348 0.97516 1.03502 1.04797 1.18065 0.91402 0.89612 0.89881 1.20287 0.98000 1.12878 1.16213 0.88233 1.27008 0.94683 1.00905 0.95912 1.69801 1.07246 1.32107 1.31434 0.85090 0.78768 0.76502 0.78681 1.18284 1.18734 1.17724 1.21270 1.00574 1.01090 0.98082 1.20216 0.86285 0.96540 0.93434 1.98304 1.48175 1.84713 1.73554 0.92825 0.92666 0.92074 0.91828 0.91692 0.90972 0.90562 0.76502 0.90993 0.89974 0.73873 0.84902 0.86130 0.88616 0.85813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.27 9.91 71.98 0.71 -1.56 16 2 C -0.12 -1.93 5.83 30.59 0.18 -1.75 16 3 C -0.15 -2.80 4.89 30.59 0.15 -2.66 16 4 C 0.11 2.33 3.06 30.60 0.09 2.42 16 5 H 0.11 2.25 8.14 -2.39 -0.02 2.23 16 6 O -0.57 -12.49 12.67 -148.98 -1.89 -14.38 16 7 C 0.08 2.13 3.74 86.38 0.32 2.45 16 8 N -1.10 -33.61 5.96 -187.48 -1.12 -34.73 16 9 S 2.72 104.84 5.44 -56.49 -0.31 104.54 16 10 O -1.00 -41.56 16.94 -128.00 -2.17 -43.73 16 11 O -0.99 -41.92 15.94 -128.00 -2.04 -43.96 16 12 C -0.81 -35.05 5.91 22.48 0.13 -34.92 16 13 C 0.00 0.20 9.52 22.22 0.21 0.41 16 14 C -0.25 -11.45 9.79 22.73 0.22 -11.23 16 15 C 0.11 5.60 5.57 -21.30 -0.12 5.48 16 16 C -0.45 -20.81 9.05 23.46 0.21 -20.59 16 17 H 0.10 4.31 7.91 -2.91 -0.02 4.29 16 18 C 0.04 1.55 5.14 85.25 0.44 1.99 16 19 N -0.78 -34.89 10.95 21.82 0.24 -34.65 16 20 Si 0.99 32.04 29.60 68.60 2.03 34.07 16 21 H -0.26 -8.36 7.11 99.48 0.71 -7.66 16 22 H -0.26 -8.04 7.11 99.48 0.71 -7.33 16 23 H -0.25 -7.90 7.11 99.48 0.71 -7.20 16 24 C -0.19 -9.16 8.47 22.75 0.19 -8.97 16 25 C 0.06 2.84 6.08 22.27 0.14 2.97 16 26 Cl -0.08 -2.88 20.52 -2.72 -0.06 -2.94 16 27 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 30 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.06 1.14 7.82 -2.38 -0.02 1.12 16 32 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.39 6.96 9.05 -74.06 -0.67 6.29 16 35 H 0.07 2.14 6.14 -2.38 -0.01 2.13 16 36 H 0.08 2.41 5.86 -2.39 -0.01 2.39 16 37 H 0.42 11.26 8.51 -96.74 -0.82 10.43 16 38 H 0.13 5.26 7.31 -2.91 -0.02 5.24 16 39 H 0.12 4.96 8.06 -2.91 -0.02 4.94 16 40 H 0.30 11.93 8.30 -92.71 -0.77 11.16 16 41 H 0.12 6.10 6.16 -2.91 -0.02 6.09 16 Total: -1.00 -58.75 358.43 -2.83 -61.58 By element: Atomic # 1 Polarization: 40.57 SS G_CDS: -0.41 Total: 40.16 kcal Atomic # 6 Polarization: -68.85 SS G_CDS: 2.89 Total: -65.96 kcal Atomic # 7 Polarization: -68.50 SS G_CDS: -0.88 Total: -69.38 kcal Atomic # 8 Polarization: -95.97 SS G_CDS: -6.10 Total: -102.07 kcal Atomic # 14 Polarization: 32.04 SS G_CDS: 2.03 Total: 34.07 kcal Atomic # 16 Polarization: 104.84 SS G_CDS: -0.31 Total: 104.54 kcal Atomic # 17 Polarization: -2.88 SS G_CDS: -0.06 Total: -2.94 kcal Total: -58.75 -2.83 -61.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451238703.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.304 kcal (2) G-P(sol) polarization free energy of solvation -58.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds