Wall clock time and date at job start Wed Apr 1 2020 04:34:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.39812 * 120.08633 * 91.46471 * 3 2 1 5 5 C 1.37655 * 119.92778 * 180.02562 * 4 3 2 6 6 C 1.39155 * 120.11543 * 359.97438 * 5 4 3 7 7 N 1.39542 * 119.90948 * 179.97438 * 6 5 4 8 8 C 1.46764 * 124.34964 * 354.16073 * 7 6 5 9 9 C 1.54483 * 105.47450 * 197.03888 * 8 7 6 10 10 H 1.09002 * 110.96771 * 216.46527 * 9 8 7 11 11 C 1.50702 * 110.97216 * 92.69928 * 9 8 7 12 12 O 1.21278 * 120.00151 * 6.16897 * 11 9 8 13 13 N 1.34771 * 119.99842 * 186.16845 * 11 9 8 14 14 C 1.46499 * 119.99930 * 180.02562 * 13 11 9 15 15 C 1.50699 * 109.47167 * 180.02562 * 14 13 11 16 16 H 1.07999 * 120.00114 * 359.97438 * 15 14 13 17 17 C 1.37876 * 120.00174 * 179.97438 * 15 14 13 18 18 N 1.31517 * 119.99694 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00387 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.46994 * 60.00178 * 19 17 15 21 21 H 1.48499 * 109.47595 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47350 * 300.00038 * 19 17 15 23 23 C 1.54624 * 101.76056 * 334.57913 * 9 8 7 24 24 C 1.34417 * 124.35217 * 174.18061 * 7 6 5 25 25 O 1.21286 * 124.93830 * 359.61083 * 24 7 6 26 26 C 1.39023 * 120.18036 * 0.27434 * 6 5 4 27 27 C 1.37880 * 120.06533 * 359.48648 * 26 6 5 28 28 Cl 1.73603 * 120.05357 * 180.27577 * 27 26 6 29 29 H 1.08003 * 120.03898 * 359.97438 * 4 3 2 30 30 H 1.08000 * 119.93984 * 179.97438 * 5 4 3 31 31 H 1.08998 * 110.24765 * 78.03458 * 8 7 6 32 32 H 1.09004 * 110.24626 * 316.03404 * 8 7 6 33 33 H 0.97000 * 120.00235 * 359.97438 * 13 11 9 34 34 H 1.08997 * 109.47106 * 299.99833 * 14 13 11 35 35 H 1.08994 * 109.47453 * 59.99644 * 14 13 11 36 36 H 0.97009 * 119.99654 * 179.97438 * 18 17 15 37 37 H 1.09006 * 110.48249 * 143.47462 * 23 9 8 38 38 H 1.08999 * 110.49258 * 266.11733 * 23 9 8 39 39 H 1.08001 * 119.96513 * 179.72435 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2688 0.0319 -1.2094 5 6 4.6454 0.0319 -1.2056 6 6 5.3403 0.0014 -0.0003 7 7 6.7357 0.0009 -0.0015 8 6 7.5627 -0.0923 -1.2103 9 6 8.9708 -0.4922 -0.7165 10 1 9.7450 -0.0041 -1.3086 11 6 9.1439 -1.9891 -0.7349 12 8 8.2790 -2.6938 -1.2105 13 7 10.2599 -2.5447 -0.2229 14 6 10.4285 -3.9999 -0.2413 15 6 11.7501 -4.3605 0.3866 16 1 12.3998 -3.5834 0.7615 17 6 12.1299 -5.6824 0.4826 18 7 11.3386 -6.6287 0.0265 19 14 13.7685 -6.1294 1.2602 20 1 13.7990 -5.6447 2.6635 21 1 13.9388 -7.6045 1.2428 22 1 14.8701 -5.4944 0.4931 23 6 8.9611 0.0460 0.7330 24 6 7.4951 0.0854 1.1043 25 8 7.0672 0.1790 2.2354 26 6 4.6481 -0.0350 1.2048 27 6 3.2693 -0.0302 1.2098 28 17 2.4052 -0.0684 2.7151 29 1 2.7309 0.0552 -2.1456 30 1 5.1870 0.0556 -2.1396 31 1 7.6004 0.8721 -1.7169 32 1 7.1671 -0.8558 -1.8801 33 1 10.9519 -1.9811 0.1572 34 1 9.6200 -4.4664 0.3215 35 1 10.4062 -4.3553 -1.2714 36 1 11.6060 -7.5588 0.0937 37 1 9.5041 -0.6294 1.3943 38 1 9.3914 1.0467 0.7714 39 1 5.1909 -0.0631 2.1380 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451247631.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:34:12 Heat of formation + Delta-G solvation = -16.687826 kcal Electronic energy + Delta-G solvation = -26617.831597 eV Core-core repulsion = 22551.471059 eV Total energy + Delta-G solvation = -4066.360537 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.082 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.68985 -39.65313 -38.78430 -37.07170 -36.74702 -36.35120 -34.42025 -33.64291 -32.40616 -31.35964 -30.09181 -28.10538 -27.47852 -24.79362 -24.10548 -22.98387 -21.83489 -20.47691 -19.78691 -19.42218 -18.13784 -17.90520 -16.50091 -16.43789 -15.74004 -15.55568 -15.35182 -15.08059 -14.79665 -14.63458 -14.51307 -14.35827 -14.16051 -13.80180 -13.78199 -13.23939 -13.05562 -12.95873 -12.90989 -12.62676 -12.15590 -12.07460 -12.05924 -11.92525 -11.74157 -11.68626 -11.34801 -11.08657 -10.94773 -10.50350 -10.40620 -10.01693 -9.53333 -9.34417 -9.29358 -8.85121 -8.38049 -8.09482 -6.25799 -4.33839 0.23748 0.77796 1.62387 2.05666 2.38094 2.41504 2.74760 2.97132 3.19392 3.24789 3.25908 3.44542 3.57491 3.64769 3.84273 4.03512 4.26191 4.38216 4.47451 4.61197 4.72972 4.83964 4.88114 5.04950 5.10744 5.18503 5.25111 5.36383 5.45636 5.50224 5.53043 5.68164 5.78675 5.83389 6.44290 6.59978 7.13663 7.19037 7.22504 7.36922 7.51787 7.64332 7.85248 8.39233 8.61078 8.85288 9.33051 10.84148 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.016189 B = 0.002284 C = 0.002246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1729.183677 B =12256.423625 C =12466.381909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.411 5.411 2 C 0.258 3.742 3 C -0.059 4.059 4 C -0.026 4.026 5 C -0.155 4.155 6 C 0.223 3.777 7 N -0.553 5.553 8 C 0.106 3.894 9 C -0.126 4.126 10 H 0.131 0.869 11 C 0.501 3.499 12 O -0.546 6.546 13 N -0.705 5.705 14 C 0.250 3.750 15 C -0.547 4.547 16 H 0.063 0.937 17 C 0.065 3.935 18 N -0.884 5.884 19 Si 0.904 3.096 20 H -0.275 1.275 21 H -0.285 1.285 22 H -0.275 1.275 23 C -0.145 4.145 24 C 0.522 3.478 25 O -0.499 6.499 26 C -0.157 4.157 27 C 0.039 3.961 28 Cl -0.047 7.047 29 H 0.148 0.852 30 H 0.146 0.854 31 H 0.093 0.907 32 H 0.112 0.888 33 H 0.392 0.608 34 H 0.028 0.972 35 H 0.029 0.971 36 H 0.268 0.732 37 H 0.119 0.881 38 H 0.122 0.878 39 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.339 18.852 -3.129 20.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.087 5.087 2 C -0.057 4.057 3 C -0.065 4.065 4 C -0.047 4.047 5 C -0.176 4.176 6 C 0.126 3.874 7 N -0.274 5.274 8 C -0.015 4.015 9 C -0.148 4.148 10 H 0.149 0.851 11 C 0.284 3.716 12 O -0.425 6.425 13 N -0.352 5.352 14 C 0.129 3.871 15 C -0.586 4.586 16 H 0.081 0.919 17 C -0.139 4.139 18 N -0.521 5.521 19 Si 0.731 3.269 20 H -0.200 1.200 21 H -0.210 1.210 22 H -0.200 1.200 23 C -0.185 4.185 24 C 0.311 3.689 25 O -0.373 6.373 26 C -0.177 4.177 27 C 0.008 3.992 28 Cl -0.018 7.018 29 H 0.165 0.835 30 H 0.164 0.836 31 H 0.111 0.889 32 H 0.130 0.870 33 H 0.225 0.775 34 H 0.046 0.954 35 H 0.047 0.953 36 H 0.077 0.923 37 H 0.137 0.863 38 H 0.140 0.860 39 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -10.962 18.131 -2.722 21.362 hybrid contribution 1.691 -0.204 0.657 1.825 sum -9.271 17.928 -2.066 20.289 Atomic orbital electron populations 1.81227 1.11758 1.08886 1.06798 1.25347 0.92306 0.93901 0.94134 1.15760 0.84819 1.12750 0.93136 1.20900 0.93221 0.94285 0.96295 1.20824 0.93845 1.05880 0.97071 1.17765 0.81810 0.94052 0.93821 1.45801 1.03539 1.68093 1.10005 1.22331 0.88973 1.03547 0.86694 1.22405 0.98678 0.96231 0.97510 0.85117 1.20002 0.83212 0.88705 0.79669 1.90693 1.41994 1.63075 1.46714 1.46454 1.18728 1.11428 1.58615 1.19157 0.97094 0.72937 0.97865 1.21148 1.03255 0.92747 1.41416 0.91857 1.24949 0.97694 0.96119 0.95164 1.69958 1.36736 1.00573 1.44841 0.86464 0.83114 0.77529 0.79765 1.19999 1.21037 1.20016 1.22426 0.93862 1.05458 0.96752 1.21150 0.89591 0.74350 0.83762 1.90646 1.78003 1.47543 1.21118 1.21432 0.91764 1.04355 1.00189 1.20660 0.91988 1.00133 0.86377 1.98413 1.76175 1.96345 1.30857 0.83470 0.83611 0.88911 0.86981 0.77478 0.95410 0.95312 0.92270 0.86288 0.85953 0.80729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -5.42 18.54 41.84 0.78 -4.65 16 2 C 0.26 2.93 14.38 -22.47 -0.32 2.60 16 3 C -0.06 -0.59 5.74 -106.77 -0.61 -1.20 16 4 C -0.03 -0.20 9.75 -39.21 -0.38 -0.58 16 5 C -0.16 -1.23 9.38 -39.45 -0.37 -1.60 16 6 C 0.22 2.37 6.60 -83.72 -0.55 1.82 16 7 N -0.55 -5.84 3.13 -112.25 -0.35 -6.19 16 8 C 0.11 0.87 5.62 -3.12 -0.02 0.85 16 9 C -0.13 -1.15 3.54 -90.14 -0.32 -1.47 16 10 H 0.13 0.72 8.14 -51.93 -0.42 0.30 16 11 C 0.50 7.95 7.16 -10.99 -0.08 7.87 16 12 O -0.55 -11.01 15.51 5.56 0.09 -10.93 16 13 N -0.70 -12.52 5.27 -61.48 -0.32 -12.84 16 14 C 0.25 6.06 5.43 -5.19 -0.03 6.03 16 15 C -0.55 -13.86 9.28 -34.44 -0.32 -14.18 16 16 H 0.06 1.48 7.60 -52.49 -0.40 1.08 16 17 C 0.07 1.72 5.46 -17.82 -0.10 1.62 16 18 N -0.88 -25.03 13.29 55.43 0.74 -24.30 16 19 Si 0.90 19.95 29.54 -169.99 -5.02 14.93 16 20 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 21 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 22 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 23 C -0.14 -1.26 6.39 -26.75 -0.17 -1.43 16 24 C 0.52 6.23 7.91 -10.86 -0.09 6.15 16 25 O -0.50 -7.40 14.79 5.55 0.08 -7.32 16 26 C -0.16 -1.85 9.04 -39.42 -0.36 -2.20 16 27 C 0.04 0.43 6.34 -39.10 -0.25 0.18 16 28 Cl -0.05 -0.54 28.02 -51.86 -1.45 -1.99 16 29 H 0.15 0.71 8.06 -52.48 -0.42 0.29 16 30 H 0.15 0.80 6.99 -52.49 -0.37 0.43 16 31 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.11 1.07 6.49 -51.93 -0.34 0.74 16 33 H 0.39 5.71 8.14 -40.82 -0.33 5.38 16 34 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 37 H 0.12 1.17 7.51 -51.93 -0.39 0.78 16 38 H 0.12 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.18 2.36 5.23 -52.49 -0.27 2.09 16 LS Contribution 360.45 15.07 5.43 5.43 Total: -1.00 -33.83 360.45 -7.77 -41.60 By element: Atomic # 1 Polarization: 5.58 SS G_CDS: -3.77 Total: 1.81 kcal Atomic # 6 Polarization: 8.41 SS G_CDS: -3.96 Total: 4.45 kcal Atomic # 7 Polarization: -48.82 SS G_CDS: 0.84 Total: -47.98 kcal Atomic # 8 Polarization: -18.42 SS G_CDS: 0.17 Total: -18.25 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -5.02 Total: 14.93 kcal Atomic # 17 Polarization: -0.54 SS G_CDS: -1.45 Total: -1.99 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -33.83 -7.77 -41.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451247631.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.909 kcal (2) G-P(sol) polarization free energy of solvation -33.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds