Wall clock time and date at job start Wed Apr 1 2020 04:34:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.39810 * 120.08797 * 236.49819 * 3 2 1 5 5 C 1.37652 * 119.92981 * 180.02562 * 4 3 2 6 6 C 1.39165 * 120.11413 * 0.02562 * 5 4 3 7 7 N 1.39545 * 119.90780 * 179.97438 * 6 5 4 8 8 C 1.46761 * 124.34937 * 353.94103 * 7 6 5 9 9 C 1.54658 * 105.38216 * 162.85353 * 8 7 6 10 10 H 1.09003 * 110.82208 * 143.77853 * 9 8 7 11 11 C 1.50694 * 111.22989 * 267.58009 * 9 8 7 12 12 O 1.21279 * 119.99874 * 353.88561 * 11 9 8 13 13 N 1.34781 * 120.00442 * 173.87714 * 11 9 8 14 14 C 1.46496 * 119.99907 * 180.02562 * 13 11 9 15 15 C 1.50697 * 109.46645 * 180.02562 * 14 13 11 16 16 H 1.08001 * 120.00674 * 359.97438 * 15 14 13 17 17 C 1.37882 * 120.00199 * 180.02562 * 15 14 13 18 18 N 1.31513 * 119.99765 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00406 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47008 * 59.99925 * 19 17 15 21 21 H 1.48503 * 109.47367 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47087 * 300.00046 * 19 17 15 23 23 C 1.54631 * 101.68098 * 25.77140 * 9 8 7 24 24 C 1.34418 * 124.34897 * 174.24305 * 7 6 5 25 25 O 1.21275 * 124.93952 * 0.42918 * 24 7 6 26 26 C 1.39021 * 120.18162 * 0.27301 * 6 5 4 27 27 C 1.37878 * 120.06441 * 359.44529 * 26 6 5 28 28 Cl 1.73607 * 120.05689 * 180.27582 * 27 26 6 29 29 H 1.07996 * 120.03881 * 0.05062 * 4 3 2 30 30 H 1.07995 * 119.94436 * 180.02562 * 5 4 3 31 31 H 1.09000 * 110.24890 * 281.98495 * 8 7 6 32 32 H 1.09004 * 110.24433 * 43.98463 * 8 7 6 33 33 H 0.97001 * 119.99569 * 0.02562 * 13 11 9 34 34 H 1.08996 * 109.47574 * 299.99689 * 14 13 11 35 35 H 1.08996 * 109.47630 * 60.00670 * 14 13 11 36 36 H 0.96997 * 120.00528 * 180.02562 * 18 17 15 37 37 H 1.09011 * 110.48433 * 216.30558 * 23 9 8 38 38 H 1.09000 * 110.60176 * 93.72151 * 23 9 8 39 39 H 1.07992 * 119.96746 * 179.70505 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2686 0.6687 1.0087 5 6 4.6451 0.6676 1.0053 6 6 5.3403 0.0033 -0.0007 7 7 6.7358 0.0055 -0.0004 8 6 7.5624 0.7781 0.9344 9 6 8.9713 0.1450 0.8557 10 1 9.7445 0.9079 0.9471 11 6 9.1477 -0.9254 1.9016 12 8 8.2839 -1.1092 2.7329 13 7 10.2652 -1.6788 1.9132 14 6 10.4363 -2.7198 2.9296 15 6 11.7598 -3.4104 2.7234 16 1 12.4084 -3.1048 1.9157 17 6 12.1423 -4.4332 3.5652 18 7 11.3523 -4.8058 4.5484 19 14 13.7824 -5.2898 3.3092 20 1 14.8820 -4.2986 3.4262 21 1 13.9561 -6.3450 4.3395 22 1 13.8134 -5.9062 1.9585 23 6 8.9614 -0.4655 -0.5649 24 6 7.4955 -0.6952 -0.8598 25 8 7.0680 -1.4076 -1.7432 26 6 4.6484 -0.6572 -1.0095 27 6 3.2697 -0.6659 -1.0101 28 17 2.4059 -1.4968 -2.2660 29 1 2.7305 1.1846 1.7901 30 1 5.1866 1.1832 1.7846 31 1 7.5984 1.8242 0.6302 32 1 7.1675 0.6922 1.9467 33 1 10.9562 -1.5317 1.2484 34 1 10.4138 -2.2671 3.9208 35 1 9.6293 -3.4474 2.8440 36 1 11.6215 -5.5251 5.1409 37 1 9.5058 -1.4098 -0.5781 38 1 9.3907 0.2313 -1.2848 39 1 5.1914 -1.1676 -1.7911 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451247637.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:34:14 Heat of formation + Delta-G solvation = -39.288285 kcal Electronic energy + Delta-G solvation = -26610.543326 eV Core-core repulsion = 22543.202759 eV Total energy + Delta-G solvation = -4067.340567 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.082 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.51698 -40.63093 -39.90193 -37.97642 -37.65902 -37.29053 -36.11446 -34.64652 -34.07946 -32.12237 -30.98072 -29.26628 -28.80792 -25.89751 -25.00289 -24.29352 -23.02085 -21.27991 -21.07802 -20.23312 -19.22015 -18.86611 -17.98561 -17.24602 -17.04309 -16.83724 -16.44425 -16.14779 -16.06911 -15.73378 -15.48306 -15.42443 -14.99650 -14.76148 -14.53580 -14.42169 -14.17835 -13.99021 -13.96310 -13.84654 -13.62082 -13.21129 -12.98963 -12.90592 -12.75724 -12.71328 -12.64062 -12.41688 -12.23172 -12.20829 -11.48850 -11.27660 -10.89037 -10.76975 -10.70129 -10.07626 -9.79942 -9.16865 -8.27323 -6.43121 -0.57200 0.03106 0.78350 1.21510 1.45441 1.48408 1.51063 1.56345 1.63567 1.73851 1.91132 2.31962 2.54812 2.64340 2.72736 3.08293 3.11896 3.25768 3.64713 3.74877 3.86886 3.93438 4.03754 4.09618 4.42027 4.50346 4.58134 4.69239 4.75391 4.81539 4.88012 4.96179 5.02608 5.14922 5.17535 5.28012 5.50991 5.66870 5.70781 5.84224 5.87926 6.33438 6.68701 6.80372 6.91921 7.26485 7.51395 8.84278 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.016695 B = 0.002244 C = 0.002236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1676.714616 B =12476.957449 C =12520.216157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C 0.277 3.723 3 C -0.066 4.066 4 C -0.009 4.009 5 C -0.144 4.144 6 C 0.209 3.791 7 N -0.556 5.556 8 C 0.103 3.897 9 C -0.107 4.107 10 H 0.185 0.815 11 C 0.495 3.505 12 O -0.594 6.594 13 N -0.703 5.703 14 C 0.267 3.733 15 C -0.554 4.554 16 H 0.087 0.913 17 C 0.004 3.996 18 N -0.931 5.931 19 Si 0.979 3.021 20 H -0.259 1.259 21 H -0.290 1.290 22 H -0.265 1.265 23 C -0.136 4.136 24 C 0.505 3.495 25 O -0.541 6.541 26 C -0.173 4.173 27 C 0.031 3.969 28 Cl -0.059 7.059 29 H 0.182 0.818 30 H 0.175 0.825 31 H 0.148 0.852 32 H 0.100 0.900 33 H 0.411 0.589 34 H -0.008 1.008 35 H -0.019 1.019 36 H 0.267 0.733 37 H 0.106 0.894 38 H 0.172 0.828 39 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.312 18.510 -11.296 22.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.123 5.123 2 C -0.038 4.038 3 C -0.072 4.072 4 C -0.030 4.030 5 C -0.164 4.164 6 C 0.111 3.889 7 N -0.276 5.276 8 C -0.017 4.017 9 C -0.128 4.128 10 H 0.202 0.798 11 C 0.282 3.718 12 O -0.475 6.475 13 N -0.353 5.353 14 C 0.144 3.856 15 C -0.592 4.592 16 H 0.105 0.895 17 C -0.196 4.196 18 N -0.570 5.570 19 Si 0.803 3.197 20 H -0.183 1.183 21 H -0.216 1.216 22 H -0.189 1.189 23 C -0.175 4.175 24 C 0.297 3.703 25 O -0.418 6.418 26 C -0.194 4.194 27 C 0.001 3.999 28 Cl -0.030 7.030 29 H 0.199 0.801 30 H 0.193 0.807 31 H 0.166 0.834 32 H 0.118 0.882 33 H 0.247 0.753 34 H 0.010 0.990 35 H -0.001 1.001 36 H 0.076 0.924 37 H 0.124 0.876 38 H 0.189 0.811 39 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -8.920 17.785 -11.139 22.802 hybrid contribution 0.993 -1.409 -0.128 1.729 sum -7.926 16.376 -11.266 21.399 Atomic orbital electron populations 1.81244 1.12770 1.09593 1.08690 1.25486 0.92401 0.92904 0.92983 1.15872 0.84088 1.07446 0.99744 1.21294 0.93175 0.93466 0.95061 1.21182 0.93976 1.02601 0.98690 1.18024 0.82285 0.94639 0.93966 1.45991 1.03638 1.44698 1.33313 1.22701 0.87427 0.96783 0.94808 1.22456 1.01203 0.97568 0.91608 0.79775 1.21242 0.81309 0.83117 0.86114 1.90671 1.43387 1.70995 1.42453 1.46145 1.20513 1.35374 1.33264 1.18492 0.95500 0.85082 0.86501 1.21617 1.03473 1.18452 1.15648 0.89541 1.26021 1.01703 0.97522 0.94351 1.70119 1.39173 1.29641 1.18078 0.85284 0.78421 0.77960 0.78054 1.18326 1.21561 1.18921 1.22520 0.91489 1.06196 0.97309 1.21850 0.91227 0.77432 0.79816 1.90629 1.78919 1.38581 1.33719 1.21285 0.91932 1.04271 1.01894 1.20697 0.91898 0.96401 0.90869 1.98403 1.76348 1.76834 1.51424 0.80108 0.80719 0.83428 0.88172 0.75289 0.99000 1.00058 0.92391 0.87603 0.81050 0.82667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -11.72 18.54 19.00 0.35 -11.37 16 2 C 0.28 6.12 14.38 88.33 1.27 7.39 16 3 C -0.07 -1.24 5.74 -21.25 -0.12 -1.36 16 4 C -0.01 -0.12 9.75 22.51 0.22 0.10 16 5 C -0.14 -1.97 9.39 22.35 0.21 -1.76 16 6 C 0.21 4.14 6.60 38.32 0.25 4.40 16 7 N -0.56 -10.55 3.13 -627.33 -1.96 -12.51 16 8 C 0.10 1.26 5.89 86.89 0.51 1.77 16 9 C -0.11 -1.52 3.54 -10.42 -0.04 -1.55 16 10 H 0.19 0.77 8.14 -2.39 -0.02 0.75 16 11 C 0.50 15.10 7.16 87.65 0.63 15.73 16 12 O -0.59 -24.09 15.54 -3.03 -0.05 -24.13 16 13 N -0.70 -24.59 5.27 -466.81 -2.46 -27.06 16 14 C 0.27 13.44 5.43 85.63 0.46 13.90 16 15 C -0.55 -28.11 9.28 25.60 0.24 -27.87 16 16 H 0.09 3.88 7.60 -2.91 -0.02 3.85 16 17 C 0.00 0.20 5.46 84.66 0.46 0.66 16 18 N -0.93 -54.42 13.29 21.45 0.28 -54.14 16 19 Si 0.98 40.55 29.54 68.60 2.03 42.58 16 20 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 21 H -0.29 -12.13 7.11 99.48 0.71 -11.43 16 22 H -0.26 -10.45 7.11 99.48 0.71 -9.75 16 23 C -0.14 -1.90 6.39 30.59 0.20 -1.70 16 24 C 0.51 11.42 7.91 87.90 0.70 12.11 16 25 O -0.54 -16.38 14.79 -3.02 -0.04 -16.43 16 26 C -0.17 -4.05 9.05 22.37 0.20 -3.84 16 27 C 0.03 0.69 6.34 22.58 0.14 0.84 16 28 Cl -0.06 -1.39 28.02 -2.72 -0.08 -1.46 16 29 H 0.18 1.13 8.06 -2.91 -0.02 1.10 16 30 H 0.18 1.42 6.71 -2.91 -0.02 1.40 16 31 H 0.15 0.33 8.14 -2.39 -0.02 0.31 16 32 H 0.10 1.55 6.03 -2.39 -0.01 1.53 16 33 H 0.41 11.11 8.14 -92.71 -0.75 10.36 16 34 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 35 H -0.02 -1.09 8.14 -2.39 -0.02 -1.11 16 36 H 0.27 14.73 8.31 -92.71 -0.77 13.96 16 37 H 0.11 1.85 7.51 -2.38 -0.02 1.83 16 38 H 0.17 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.16 4.32 5.22 -2.91 -0.02 4.30 16 Total: -1.00 -81.38 360.02 3.79 -77.59 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: 0.39 Total: 8.13 kcal Atomic # 6 Polarization: 13.47 SS G_CDS: 5.33 Total: 18.80 kcal Atomic # 7 Polarization: -101.29 SS G_CDS: -3.79 Total: -105.07 kcal Atomic # 8 Polarization: -40.47 SS G_CDS: -0.09 Total: -40.56 kcal Atomic # 14 Polarization: 40.55 SS G_CDS: 2.03 Total: 42.58 kcal Atomic # 17 Polarization: -1.39 SS G_CDS: -0.08 Total: -1.46 kcal Total: -81.38 3.79 -77.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451247637.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.301 kcal (2) G-P(sol) polarization free energy of solvation -81.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds