Wall clock time and date at job start Wed Apr 1 2020 05:00:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.46919 * 2 1 4 4 H 1.09000 * 109.47411 * 54.99713 * 3 2 1 5 5 O 1.42902 * 109.46801 * 294.99373 * 3 2 1 6 6 C 1.52999 * 109.46922 * 174.99987 * 3 2 1 7 7 C 1.53008 * 109.46971 * 184.99614 * 6 3 2 8 8 N 1.46496 * 109.46882 * 179.97438 * 7 6 3 9 9 S 1.65609 * 119.99596 * 165.00114 * 8 7 6 10 10 O 1.42105 * 106.40059 * 178.54447 * 9 8 7 11 11 O 1.42105 * 106.39930 * 311.46125 * 9 8 7 12 12 C 1.76196 * 107.21842 * 65.00381 * 9 8 7 13 13 C 1.38630 * 119.75907 * 114.72360 * 12 9 8 14 14 C 1.37603 * 120.26259 * 179.76220 * 13 12 9 15 15 C 1.40734 * 119.77393 * 0.51102 * 14 13 12 16 16 C 1.41403 * 120.23925 * 179.76692 * 15 14 13 17 17 H 1.07997 * 119.99776 * 24.37868 * 16 15 14 18 18 C 1.39942 * 119.99742 * 204.37533 * 16 15 14 19 19 N 1.30831 * 120.00255 * 17.86904 * 18 16 15 20 20 Si 1.86798 * 119.99972 * 197.85991 * 18 16 15 21 21 H 1.48498 * 109.47267 * 60.00467 * 20 18 16 22 22 H 1.48505 * 109.47107 * 180.02562 * 20 18 16 23 23 H 1.48509 * 109.47024 * 300.00248 * 20 18 16 24 24 C 1.40681 * 119.52471 * 359.74385 * 15 14 13 25 25 C 1.37758 * 119.72719 * 0.02562 * 24 15 14 26 26 Cl 1.73607 * 119.88628 * 179.97438 * 25 24 15 27 27 H 1.09000 * 109.47145 * 60.00695 * 1 2 3 28 28 H 1.09009 * 109.46828 * 180.02562 * 1 2 3 29 29 H 1.08991 * 109.47727 * 300.00065 * 1 2 3 30 30 H 1.09001 * 109.47349 * 239.99552 * 2 1 3 31 31 H 1.09001 * 109.46702 * 119.99604 * 2 1 3 32 32 H 0.96698 * 113.99859 * 300.00487 * 5 3 2 33 33 H 1.08998 * 109.47796 * 64.99659 * 6 3 2 34 34 H 1.09005 * 109.46896 * 304.99349 * 6 3 2 35 35 H 1.09009 * 109.46694 * 59.99903 * 7 6 3 36 36 H 1.08992 * 109.46944 * 300.00225 * 7 6 3 37 37 H 0.97002 * 120.00567 * 345.00574 * 8 7 6 38 38 H 1.07999 * 119.86734 * 359.97438 * 13 12 9 39 39 H 1.08001 * 120.11104 * 180.23525 * 14 13 12 40 40 H 0.96996 * 120.00387 * 179.97438 * 19 18 16 41 41 H 1.07998 * 120.13876 * 180.02562 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 8 1.6620 2.0813 -1.2212 6 6 3.5648 1.4443 0.1257 7 6 4.0644 2.8851 0.2510 8 7 5.5244 2.8868 0.3720 9 16 6.3718 4.2924 0.1510 10 8 7.7400 3.9740 0.3662 11 8 5.8880 4.8671 -1.0552 12 6 5.9067 5.3912 1.4475 13 6 6.8459 5.7797 2.3903 14 6 6.4952 6.6412 3.4043 15 6 5.1746 7.1202 3.4889 16 6 4.8022 8.0020 4.5297 17 1 5.5498 8.6144 5.0119 18 6 3.4651 8.0813 4.9348 19 7 2.6288 7.1253 4.6211 20 14 2.8743 9.5518 5.9236 21 1 3.0851 10.7939 5.1375 22 1 1.4287 9.3964 6.2262 23 1 3.6395 9.6339 7.1937 24 6 4.2277 6.7158 2.5303 25 6 4.6018 5.8563 1.5208 26 17 3.4364 5.3541 0.3361 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0278 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 2.0142 1.6540 -2.0139 33 1 4.0030 0.9836 -0.7595 34 1 3.8569 0.8801 1.0114 35 1 3.6262 3.3459 1.1365 36 1 3.7722 3.4493 -0.6345 37 1 5.9947 2.0647 0.5815 38 1 7.8577 5.4073 2.3267 39 1 7.2298 6.9452 4.1353 40 1 1.7020 7.1800 4.9021 41 1 3.2116 7.0777 2.5855 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451322057.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:00:52 Heat of formation + Delta-G solvation = -128.750562 kcal Electronic energy + Delta-G solvation = -26551.670290 eV Core-core repulsion = 22583.601548 eV Total energy + Delta-G solvation = -3968.068742 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.079 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -38.38822 -37.86796 -36.55110 -35.75816 -35.10708 -34.97916 -34.11400 -32.93025 -30.33526 -30.16468 -29.45171 -26.03473 -25.41176 -22.22138 -21.74007 -21.45283 -21.31837 -18.87436 -17.85666 -17.23674 -16.69572 -16.42064 -15.97455 -15.69278 -15.62612 -14.80148 -14.52996 -14.41311 -14.19808 -13.70395 -13.38372 -13.28980 -12.99742 -12.67710 -12.53521 -12.32183 -12.18673 -12.02616 -11.61547 -11.53413 -11.39792 -11.33694 -11.30134 -11.23134 -11.14214 -11.07593 -10.82892 -10.59812 -10.42356 -10.12159 -10.02609 -9.83421 -9.62005 -9.36296 -8.89884 -8.11244 -7.70007 -7.27188 -4.95328 1.25599 2.04764 2.64929 2.81479 2.84546 2.88604 2.97680 3.57736 3.70692 4.08458 4.30081 4.47567 4.58431 4.83077 4.94602 5.10743 5.14593 5.21204 5.24600 5.42309 5.57940 5.66585 5.75761 5.77576 5.93921 5.98162 6.01986 6.09995 6.24423 6.38705 6.41512 6.54359 6.66770 6.80317 6.99670 7.16882 7.31254 7.40025 7.57182 7.61922 7.75619 8.06967 8.33245 8.40426 9.63030 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.010536 B = 0.004090 C = 0.003194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2656.799407 B = 6843.545588 C = 8764.338958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.154 4.154 3 C 0.106 3.894 4 H 0.103 0.897 5 O -0.556 6.556 6 C -0.162 4.162 7 C 0.114 3.886 8 N -1.124 6.124 9 S 2.698 3.302 10 O -0.989 6.989 11 O -0.969 6.969 12 C -0.791 4.791 13 C 0.011 3.989 14 C -0.238 4.238 15 C 0.142 3.858 16 C -0.424 4.424 17 H 0.093 0.907 18 C 0.070 3.930 19 N -0.758 5.758 20 Si 0.920 3.080 21 H -0.258 1.258 22 H -0.273 1.273 23 H -0.260 1.260 24 C -0.168 4.168 25 C 0.066 3.934 26 Cl -0.091 7.091 27 H 0.060 0.940 28 H 0.050 0.950 29 H 0.055 0.945 30 H 0.063 0.937 31 H 0.070 0.930 32 H 0.371 0.629 33 H 0.069 0.931 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.090 0.910 37 H 0.408 0.592 38 H 0.117 0.883 39 H 0.106 0.894 40 H 0.293 0.707 41 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.642 -10.007 -3.730 11.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.192 4.192 3 C 0.046 3.954 4 H 0.121 0.879 5 O -0.361 6.361 6 C -0.201 4.201 7 C -0.012 4.012 8 N -0.881 5.881 9 S 2.794 3.206 10 O -0.979 6.979 11 O -0.959 6.959 12 C -0.886 4.886 13 C -0.009 4.009 14 C -0.258 4.258 15 C 0.137 3.863 16 C -0.451 4.451 17 H 0.111 0.889 18 C -0.153 4.153 19 N -0.380 5.380 20 Si 0.743 3.257 21 H -0.182 1.182 22 H -0.197 1.197 23 H -0.184 1.184 24 C -0.189 4.189 25 C 0.038 3.962 26 Cl -0.062 7.062 27 H 0.080 0.920 28 H 0.069 0.931 29 H 0.074 0.926 30 H 0.082 0.918 31 H 0.089 0.911 32 H 0.218 0.782 33 H 0.088 0.912 34 H 0.095 0.905 35 H 0.094 0.906 36 H 0.108 0.892 37 H 0.241 0.759 38 H 0.135 0.865 39 H 0.125 0.875 40 H 0.105 0.895 41 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -3.831 -9.430 -4.138 10.987 hybrid contribution -0.316 -0.126 0.916 0.977 sum -4.147 -9.556 -3.222 10.904 Atomic orbital electron populations 1.21708 0.95185 1.01201 1.02594 1.22236 0.97102 0.97311 1.02583 1.21956 0.92666 0.92611 0.88141 0.87901 1.86636 1.76758 1.57229 1.15474 1.22602 0.96584 0.97874 1.03060 1.22082 0.79018 0.96655 1.03447 1.55616 1.16211 1.26432 1.89794 1.01170 0.72104 0.72746 0.74541 1.93477 1.32815 1.84328 1.87308 1.93539 1.81311 1.77076 1.43990 1.29093 1.01304 1.31339 1.26879 1.20183 0.96124 0.93570 0.91070 1.21104 0.97566 1.05402 1.01738 1.17719 0.90749 0.87798 0.89985 1.19960 0.93748 1.17743 1.13618 0.88923 1.26195 0.96438 0.96961 0.95722 1.69782 1.06220 1.28792 1.33208 0.86133 0.78350 0.81013 0.80191 1.18168 1.19732 1.18414 1.21289 1.01518 1.01842 0.94212 1.20145 0.87624 0.97820 0.90626 1.98338 1.61240 1.88597 1.58000 0.92047 0.93093 0.92605 0.91795 0.91092 0.78203 0.91215 0.90542 0.90575 0.89247 0.75913 0.86504 0.87544 0.89540 0.84827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 9.81 37.16 0.36 -0.93 16 2 C -0.15 -1.31 5.61 -26.73 -0.15 -1.46 16 3 C 0.11 1.13 2.97 -26.73 -0.08 1.06 16 4 H 0.10 1.23 8.14 -51.93 -0.42 0.80 16 5 O -0.56 -6.50 12.41 -35.23 -0.44 -6.93 16 6 C -0.16 -1.79 5.04 -26.73 -0.13 -1.92 16 7 C 0.11 1.73 3.99 -4.04 -0.02 1.71 16 8 N -1.12 -17.66 6.00 -10.61 -0.06 -17.72 16 9 S 2.70 53.53 5.44 -107.50 -0.58 52.95 16 10 O -0.99 -20.90 16.94 -57.17 -0.97 -21.87 16 11 O -0.97 -21.31 15.95 -57.17 -0.91 -22.22 16 12 C -0.79 -17.58 5.91 -39.25 -0.23 -17.81 16 13 C 0.01 0.24 9.52 -39.67 -0.38 -0.14 16 14 C -0.24 -5.43 9.79 -38.87 -0.38 -5.81 16 15 C 0.14 3.46 5.57 -106.83 -0.60 2.87 16 16 C -0.42 -9.93 9.05 -37.74 -0.34 -10.27 16 17 H 0.09 2.03 7.91 -52.49 -0.42 1.61 16 18 C 0.07 1.55 5.14 -17.34 -0.09 1.46 16 19 N -0.76 -17.27 10.95 55.55 0.61 -16.66 16 20 Si 0.92 16.32 29.59 -169.99 -5.03 11.29 16 21 H -0.26 -4.59 7.11 56.52 0.40 -4.19 16 22 H -0.27 -4.72 7.11 56.52 0.40 -4.32 16 23 H -0.26 -4.54 7.11 56.52 0.40 -4.14 16 24 C -0.17 -4.09 8.47 -38.84 -0.33 -4.42 16 25 C 0.07 1.52 6.08 -39.57 -0.24 1.28 16 26 Cl -0.09 -1.84 20.52 -51.86 -1.06 -2.91 16 27 H 0.06 0.56 7.82 -51.93 -0.41 0.16 16 28 H 0.05 0.38 8.14 -51.92 -0.42 -0.04 16 29 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.37 3.03 9.04 45.56 0.41 3.45 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.08 1.27 6.14 -51.92 -0.32 0.95 16 36 H 0.09 1.49 5.54 -51.93 -0.29 1.20 16 37 H 0.41 5.22 8.65 -34.48 -0.30 4.93 16 38 H 0.12 2.35 7.31 -52.49 -0.38 1.97 16 39 H 0.11 2.20 8.06 -52.49 -0.42 1.78 16 40 H 0.29 6.00 8.30 -40.82 -0.34 5.66 16 41 H 0.13 3.31 6.16 -52.49 -0.32 2.99 16 LS Contribution 358.00 15.07 5.40 5.40 Total: -1.00 -29.22 358.00 -10.20 -39.41 By element: Atomic # 1 Polarization: 18.19 SS G_CDS: -4.54 Total: 13.65 kcal Atomic # 6 Polarization: -31.79 SS G_CDS: -2.60 Total: -34.39 kcal Atomic # 7 Polarization: -34.93 SS G_CDS: 0.54 Total: -34.39 kcal Atomic # 8 Polarization: -48.70 SS G_CDS: -2.32 Total: -51.02 kcal Atomic # 14 Polarization: 16.32 SS G_CDS: -5.03 Total: 11.29 kcal Atomic # 16 Polarization: 53.53 SS G_CDS: -0.58 Total: 52.95 kcal Atomic # 17 Polarization: -1.84 SS G_CDS: -1.06 Total: -2.91 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -29.22 -10.20 -39.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451322057.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.336 kcal (2) G-P(sol) polarization free energy of solvation -29.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds