Wall clock time and date at job start Wed Apr 1 2020 05:00:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.46919 * 2 1 4 4 H 1.09000 * 109.47411 * 54.99713 * 3 2 1 5 5 O 1.42902 * 109.46801 * 294.99373 * 3 2 1 6 6 C 1.52999 * 109.46922 * 174.99987 * 3 2 1 7 7 C 1.53008 * 109.46971 * 184.99614 * 6 3 2 8 8 N 1.46496 * 109.46882 * 179.97438 * 7 6 3 9 9 S 1.65609 * 119.99596 * 165.00114 * 8 7 6 10 10 O 1.42105 * 106.40059 * 178.54447 * 9 8 7 11 11 O 1.42105 * 106.39930 * 311.46125 * 9 8 7 12 12 C 1.76196 * 107.21842 * 65.00381 * 9 8 7 13 13 C 1.38630 * 119.75907 * 114.72360 * 12 9 8 14 14 C 1.37603 * 120.26259 * 179.76220 * 13 12 9 15 15 C 1.40734 * 119.77393 * 0.51102 * 14 13 12 16 16 C 1.41403 * 120.23925 * 179.76692 * 15 14 13 17 17 H 1.07997 * 119.99776 * 24.37868 * 16 15 14 18 18 C 1.39942 * 119.99742 * 204.37533 * 16 15 14 19 19 N 1.30831 * 120.00255 * 17.86904 * 18 16 15 20 20 Si 1.86798 * 119.99972 * 197.85991 * 18 16 15 21 21 H 1.48498 * 109.47267 * 60.00467 * 20 18 16 22 22 H 1.48505 * 109.47107 * 180.02562 * 20 18 16 23 23 H 1.48509 * 109.47024 * 300.00248 * 20 18 16 24 24 C 1.40681 * 119.52471 * 359.74385 * 15 14 13 25 25 C 1.37758 * 119.72719 * 0.02562 * 24 15 14 26 26 Cl 1.73607 * 119.88628 * 179.97438 * 25 24 15 27 27 H 1.09000 * 109.47145 * 60.00695 * 1 2 3 28 28 H 1.09009 * 109.46828 * 180.02562 * 1 2 3 29 29 H 1.08991 * 109.47727 * 300.00065 * 1 2 3 30 30 H 1.09001 * 109.47349 * 239.99552 * 2 1 3 31 31 H 1.09001 * 109.46702 * 119.99604 * 2 1 3 32 32 H 0.96698 * 113.99859 * 300.00487 * 5 3 2 33 33 H 1.08998 * 109.47796 * 64.99659 * 6 3 2 34 34 H 1.09005 * 109.46896 * 304.99349 * 6 3 2 35 35 H 1.09009 * 109.46694 * 59.99903 * 7 6 3 36 36 H 1.08992 * 109.46944 * 300.00225 * 7 6 3 37 37 H 0.97002 * 120.00567 * 345.00574 * 8 7 6 38 38 H 1.07999 * 119.86734 * 359.97438 * 13 12 9 39 39 H 1.08001 * 120.11104 * 180.23525 * 14 13 12 40 40 H 0.96996 * 120.00387 * 179.97438 * 19 18 16 41 41 H 1.07998 * 120.13876 * 180.02562 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 8 1.6620 2.0813 -1.2212 6 6 3.5648 1.4443 0.1257 7 6 4.0644 2.8851 0.2510 8 7 5.5244 2.8868 0.3720 9 16 6.3718 4.2924 0.1510 10 8 7.7400 3.9740 0.3662 11 8 5.8880 4.8671 -1.0552 12 6 5.9067 5.3912 1.4475 13 6 6.8459 5.7797 2.3903 14 6 6.4952 6.6412 3.4043 15 6 5.1746 7.1202 3.4889 16 6 4.8022 8.0020 4.5297 17 1 5.5498 8.6144 5.0119 18 6 3.4651 8.0813 4.9348 19 7 2.6288 7.1253 4.6211 20 14 2.8743 9.5518 5.9236 21 1 3.0851 10.7939 5.1375 22 1 1.4287 9.3964 6.2262 23 1 3.6395 9.6339 7.1937 24 6 4.2277 6.7158 2.5303 25 6 4.6018 5.8563 1.5208 26 17 3.4364 5.3541 0.3361 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0278 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 2.0142 1.6540 -2.0139 33 1 4.0030 0.9836 -0.7595 34 1 3.8569 0.8801 1.0114 35 1 3.6262 3.3459 1.1365 36 1 3.7722 3.4493 -0.6345 37 1 5.9947 2.0647 0.5815 38 1 7.8577 5.4073 2.3267 39 1 7.2298 6.9452 4.1353 40 1 1.7020 7.1800 4.9021 41 1 3.2116 7.0777 2.5855 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451322057.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:00:51 Heat of formation + Delta-G solvation = -149.693290 kcal Electronic energy + Delta-G solvation = -26552.578435 eV Core-core repulsion = 22583.601548 eV Total energy + Delta-G solvation = -3968.976887 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.079 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.63847 -39.25995 -38.19718 -37.42725 -36.77276 -36.26523 -35.81953 -33.69968 -32.08154 -31.29957 -31.10161 -27.77780 -26.40196 -23.63615 -23.07832 -23.01810 -22.29144 -20.41021 -19.59542 -18.79260 -18.26165 -17.44745 -17.29411 -17.12487 -16.69507 -16.24697 -16.12270 -15.67209 -15.33591 -15.16962 -14.93311 -14.53030 -14.39685 -14.12213 -13.98708 -13.84721 -13.20745 -13.15418 -13.09573 -13.05766 -12.95448 -12.87558 -12.70685 -12.57835 -12.41908 -12.13669 -12.02013 -11.82004 -11.80189 -11.68041 -11.55089 -11.25287 -11.00063 -10.68810 -10.30835 -9.88448 -9.46127 -8.93940 -6.73484 -0.33102 0.30670 0.84914 1.22842 1.35870 1.43841 1.50684 2.09122 2.20135 2.43612 2.86212 3.36962 3.46912 3.63906 3.83338 3.94692 4.13382 4.21778 4.28222 4.33205 4.60376 4.65011 4.70184 4.72218 4.81816 4.84527 4.92128 4.99505 5.05819 5.08013 5.13058 5.23583 5.25019 5.39042 5.39683 5.43562 5.53322 5.79202 5.99631 6.22167 6.30561 6.56933 6.63116 6.93589 7.99845 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.010536 B = 0.004090 C = 0.003194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2656.799407 B = 6843.545588 C = 8764.338958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.147 4.147 3 C 0.106 3.894 4 H 0.083 0.917 5 O -0.577 6.577 6 C -0.153 4.153 7 C 0.109 3.891 8 N -1.106 6.106 9 S 2.721 3.279 10 O -0.999 6.999 11 O -0.990 6.990 12 C -0.808 4.808 13 C 0.005 3.995 14 C -0.251 4.251 15 C 0.114 3.886 16 C -0.449 4.449 17 H 0.101 0.899 18 C 0.035 3.965 19 N -0.787 5.787 20 Si 0.992 3.008 21 H -0.258 1.258 22 H -0.264 1.264 23 H -0.252 1.252 24 C -0.192 4.192 25 C 0.059 3.941 26 Cl -0.073 7.073 27 H 0.052 0.948 28 H 0.064 0.936 29 H 0.045 0.955 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.386 0.614 33 H 0.091 0.909 34 H 0.093 0.907 35 H 0.058 0.942 36 H 0.074 0.926 37 H 0.425 0.575 38 H 0.136 0.864 39 H 0.122 0.878 40 H 0.302 0.698 41 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.768 -11.202 -3.595 12.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.184 4.184 3 C 0.046 3.954 4 H 0.101 0.899 5 O -0.384 6.384 6 C -0.192 4.192 7 C -0.017 4.017 8 N -0.868 5.868 9 S 2.815 3.185 10 O -0.990 6.990 11 O -0.980 6.980 12 C -0.900 4.900 13 C -0.015 4.015 14 C -0.272 4.272 15 C 0.110 3.890 16 C -0.475 4.475 17 H 0.119 0.881 18 C -0.186 4.186 19 N -0.409 5.409 20 Si 0.811 3.189 21 H -0.182 1.182 22 H -0.188 1.188 23 H -0.175 1.175 24 C -0.213 4.213 25 C 0.031 3.969 26 Cl -0.044 7.044 27 H 0.071 0.929 28 H 0.083 0.917 29 H 0.064 0.936 30 H 0.099 0.901 31 H 0.099 0.901 32 H 0.235 0.765 33 H 0.109 0.891 34 H 0.112 0.888 35 H 0.076 0.924 36 H 0.093 0.907 37 H 0.261 0.739 38 H 0.153 0.847 39 H 0.140 0.860 40 H 0.113 0.887 41 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -3.939 -10.636 -3.996 12.025 hybrid contribution -0.305 0.156 0.796 0.866 sum -4.243 -10.480 -3.200 11.751 Atomic orbital electron populations 1.21712 0.95526 1.01822 1.01724 1.22167 0.96720 0.95648 1.03892 1.21934 0.92297 0.93829 0.87343 0.89874 1.86600 1.77189 1.58190 1.16451 1.22568 0.96711 0.95007 1.04930 1.22059 0.78212 0.99521 1.01880 1.55210 1.16503 1.25740 1.89343 1.00467 0.71729 0.72868 0.73445 1.93454 1.33764 1.84521 1.87246 1.93510 1.81682 1.78090 1.44750 1.29542 1.00960 1.32141 1.27344 1.20465 0.97006 0.93235 0.90817 1.21348 0.97523 1.05689 1.02594 1.18078 0.91570 0.88638 0.90684 1.20296 0.95106 1.18176 1.13909 0.88104 1.27051 0.95913 0.99284 0.96377 1.69817 1.06877 1.30346 1.33811 0.85076 0.78160 0.77002 0.78690 1.18230 1.18817 1.17545 1.21275 1.01232 1.03363 0.95427 1.20311 0.88510 0.97313 0.90761 1.98339 1.60724 1.88280 1.57031 0.92891 0.91700 0.93558 0.90093 0.90085 0.76499 0.89057 0.88824 0.92409 0.90742 0.73857 0.84653 0.85987 0.88670 0.86061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.37 9.81 71.98 0.71 -1.67 16 2 C -0.15 -2.12 5.61 30.59 0.17 -1.95 16 3 C 0.11 2.11 2.97 30.59 0.09 2.20 16 4 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 5 O -0.58 -12.85 12.41 -148.98 -1.85 -14.70 16 6 C -0.15 -3.02 5.04 30.60 0.15 -2.86 16 7 C 0.11 3.20 3.99 86.38 0.34 3.54 16 8 N -1.11 -33.09 6.00 -187.48 -1.12 -34.22 16 9 S 2.72 105.82 5.44 -56.49 -0.31 105.51 16 10 O -1.00 -40.93 16.94 -128.00 -2.17 -43.10 16 11 O -0.99 -43.02 15.95 -128.00 -2.04 -45.06 16 12 C -0.81 -36.03 5.91 22.48 0.13 -35.90 16 13 C 0.00 0.21 9.52 22.21 0.21 0.42 16 14 C -0.25 -11.63 9.79 22.73 0.22 -11.41 16 15 C 0.11 5.74 5.57 -21.29 -0.12 5.62 16 16 C -0.45 -21.35 9.05 23.46 0.21 -21.14 16 17 H 0.10 4.45 7.91 -2.91 -0.02 4.42 16 18 C 0.03 1.53 5.14 85.25 0.44 1.97 16 19 N -0.79 -36.39 10.95 21.83 0.24 -36.15 16 20 Si 0.99 32.96 29.59 68.60 2.03 34.99 16 21 H -0.26 -8.55 7.11 99.48 0.71 -7.84 16 22 H -0.26 -8.32 7.11 99.48 0.71 -7.62 16 23 H -0.25 -7.99 7.11 99.48 0.71 -7.28 16 24 C -0.19 -9.68 8.47 22.75 0.19 -9.49 16 25 C 0.06 2.77 6.08 22.27 0.14 2.91 16 26 Cl -0.07 -3.00 20.52 -2.72 -0.06 -3.05 16 27 H 0.05 0.92 7.82 -2.39 -0.02 0.90 16 28 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 29 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.08 0.92 8.14 -2.39 -0.02 0.91 16 31 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.39 5.65 9.04 -74.06 -0.67 4.98 16 33 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.09 1.56 8.14 -2.38 -0.02 1.54 16 35 H 0.06 1.92 6.14 -2.38 -0.01 1.91 16 36 H 0.07 2.43 5.54 -2.39 -0.01 2.42 16 37 H 0.42 9.85 8.65 -96.74 -0.84 9.01 16 38 H 0.14 5.35 7.31 -2.91 -0.02 5.33 16 39 H 0.12 5.07 8.06 -2.91 -0.02 5.04 16 40 H 0.30 12.45 8.30 -92.71 -0.77 11.68 16 41 H 0.12 6.27 6.16 -2.91 -0.02 6.26 16 Total: -1.00 -63.10 358.00 -2.81 -65.91 By element: Atomic # 1 Polarization: 38.06 SS G_CDS: -0.42 Total: 37.63 kcal Atomic # 6 Polarization: -70.65 SS G_CDS: 2.89 Total: -67.76 kcal Atomic # 7 Polarization: -69.48 SS G_CDS: -0.89 Total: -70.37 kcal Atomic # 8 Polarization: -96.80 SS G_CDS: -6.06 Total: -102.86 kcal Atomic # 14 Polarization: 32.96 SS G_CDS: 2.03 Total: 34.99 kcal Atomic # 16 Polarization: 105.82 SS G_CDS: -0.31 Total: 105.51 kcal Atomic # 17 Polarization: -3.00 SS G_CDS: -0.06 Total: -3.05 kcal Total: -63.10 -2.81 -65.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451322057.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.785 kcal (2) G-P(sol) polarization free energy of solvation -63.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds