Wall clock time and date at job start Wed Apr 1 2020 04:58:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46494 * 120.00278 * 2 1 4 4 C 1.52996 * 109.47179 * 274.29731 * 3 2 1 5 5 C 1.53000 * 109.47251 * 59.99410 * 4 3 2 6 6 C 1.53000 * 109.47277 * 179.97438 * 4 3 2 7 7 O 1.42905 * 109.46777 * 299.99746 * 4 3 2 8 8 S 1.65604 * 120.00094 * 179.97438 * 2 1 3 9 9 O 1.42091 * 106.40518 * 150.89288 * 8 2 1 10 10 O 1.42104 * 106.40062 * 17.97229 * 8 2 1 11 11 C 1.76203 * 107.21800 * 264.43786 * 8 2 1 12 12 C 1.38642 * 119.75170 * 247.36195 * 11 8 2 13 13 C 1.37606 * 120.25761 * 180.29839 * 12 11 8 14 14 C 1.40736 * 119.77216 * 359.71776 * 13 12 11 15 15 C 1.41394 * 120.23503 * 180.02562 * 14 13 12 16 16 H 1.08004 * 120.00280 * 25.42587 * 15 14 13 17 17 C 1.39945 * 120.00296 * 205.42164 * 15 14 13 18 18 N 1.30827 * 119.99749 * 14.72163 * 17 15 14 19 19 Si 1.86796 * 120.00425 * 194.71968 * 17 15 14 20 20 H 1.48501 * 109.47298 * 0.02562 * 19 17 15 21 21 H 1.48506 * 109.47140 * 120.00087 * 19 17 15 22 22 H 1.48500 * 109.47474 * 240.00004 * 19 17 15 23 23 C 1.40676 * 119.52647 * 0.02562 * 14 13 12 24 24 C 1.37756 * 119.72931 * 0.02562 * 23 14 13 25 25 Cl 1.73604 * 119.88342 * 180.02562 * 24 23 14 26 26 H 1.09004 * 109.47156 * 270.00272 * 1 2 3 27 27 H 1.08994 * 109.47253 * 30.00201 * 1 2 3 28 28 H 1.09005 * 109.46915 * 150.00082 * 1 2 3 29 29 H 1.09005 * 109.46811 * 34.29015 * 3 2 1 30 30 H 1.08993 * 109.47762 * 154.29343 * 3 2 1 31 31 H 1.08997 * 109.46969 * 60.00494 * 5 4 3 32 32 H 1.09008 * 109.47229 * 180.02562 * 5 4 3 33 33 H 1.08994 * 109.47443 * 299.99745 * 5 4 3 34 34 H 1.08993 * 109.47709 * 59.99585 * 6 4 3 35 35 H 1.09000 * 109.47236 * 179.97438 * 6 4 3 36 36 H 1.09005 * 109.46766 * 299.99317 * 6 4 3 37 37 H 0.96701 * 113.99982 * 299.99460 * 7 4 3 38 38 H 1.07995 * 119.87192 * 359.97438 * 12 11 8 39 39 H 1.08007 * 120.11086 * 179.69833 * 13 12 11 40 40 H 0.96997 * 120.00419 * 179.97438 * 18 17 15 41 41 H 1.07999 * 120.13237 * 180.02562 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.3590 1.7644 -1.4384 5 6 0.9784 1.9725 -2.0641 6 6 3.1235 3.0897 -1.4384 7 8 3.0847 0.7952 -2.1975 8 16 2.2931 -1.4342 0.0006 9 8 3.5251 -1.1865 -0.6625 10 8 1.3707 -2.4302 -0.4195 11 6 2.6951 -1.8035 1.6759 12 6 4.0194 -1.7849 2.0858 13 6 4.3457 -2.0777 3.3902 14 6 3.3290 -2.3912 4.3114 15 6 3.6532 -2.6931 5.6542 16 1 4.5629 -2.3070 6.0900 17 6 2.7954 -3.4920 6.4185 18 7 1.8579 -4.1917 5.8327 19 14 2.9888 -3.5595 8.2752 20 1 4.1144 -2.6832 8.6879 21 1 1.7357 -3.0920 8.9208 22 1 3.2695 -4.9565 8.6933 23 6 1.9879 -2.4021 3.8867 24 6 1.6840 -2.1069 2.5759 25 17 0.0303 -2.1186 2.0477 26 1 -0.3634 0.0000 1.0277 27 1 -0.3633 0.8899 -0.5138 28 1 -0.3633 -0.8900 -0.5138 29 1 1.6439 2.0078 0.5790 30 1 3.1811 1.1204 0.4457 31 1 0.4248 2.7117 -1.4851 32 1 1.0934 2.3253 -3.0891 33 1 0.4334 1.0286 -2.0642 34 1 4.1070 2.9418 -0.9925 35 1 3.2389 3.4426 -2.4632 36 1 2.5694 3.8286 -0.8595 37 1 3.9714 0.6129 -1.8574 38 1 4.7984 -1.5448 1.3775 39 1 5.3786 -2.0672 3.7058 40 1 1.2635 -4.7457 6.3624 41 1 1.1999 -2.6410 4.5855 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451353351.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:58:55 Heat of formation + Delta-G solvation = -116.233231 kcal Electronic energy + Delta-G solvation = -27457.355940 eV Core-core repulsion = 23489.829990 eV Total energy + Delta-G solvation = -3967.525950 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.079 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -38.64018 -37.86577 -36.51283 -35.62282 -35.01952 -34.94834 -34.10427 -31.91302 -30.32274 -29.47119 -28.05368 -27.02970 -26.02470 -24.15646 -21.74567 -21.32823 -20.37870 -18.37584 -17.85376 -17.38906 -16.67041 -16.55826 -15.70314 -15.43796 -14.91532 -14.69017 -14.52256 -14.24099 -13.61150 -13.43920 -13.28195 -12.89842 -12.72648 -12.69855 -12.49508 -12.20105 -12.17401 -12.12975 -11.79859 -11.68010 -11.55820 -11.49465 -11.20917 -11.15759 -11.09624 -10.91627 -10.82232 -10.51784 -10.39993 -10.26314 -10.09371 -10.03600 -9.66694 -9.47054 -8.52537 -8.08767 -7.72242 -7.23685 -4.96272 1.22203 2.03957 2.63080 2.80534 2.83600 2.89078 3.00144 3.57023 3.61513 4.10130 4.39739 4.57140 4.78116 4.90351 4.97530 5.12502 5.17082 5.24366 5.48549 5.58219 5.65252 5.71862 5.83450 5.87761 5.91457 5.96205 6.07460 6.10630 6.23899 6.33718 6.37858 6.54214 6.65386 6.79389 6.97140 7.00175 7.16034 7.33529 7.56907 7.75215 8.04272 8.07652 8.33484 8.39860 9.65592 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.019586 B = 0.003630 C = 0.003439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.250896 B = 7711.478872 C = 8139.499817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.993 5.993 3 C 0.104 3.896 4 C 0.105 3.895 5 C -0.143 4.143 6 C -0.177 4.177 7 O -0.554 6.554 8 S 2.705 3.295 9 O -0.977 6.977 10 O -0.968 6.968 11 C -0.796 4.796 12 C 0.008 3.992 13 C -0.237 4.237 14 C 0.142 3.858 15 C -0.425 4.425 16 H 0.093 0.907 17 C 0.068 3.932 18 N -0.761 5.761 19 Si 0.921 3.079 20 H -0.256 1.256 21 H -0.267 1.267 22 H -0.269 1.269 23 C -0.169 4.169 24 C 0.075 3.925 25 Cl -0.099 7.099 26 H 0.056 0.944 27 H 0.070 0.930 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.066 0.934 32 H 0.058 0.942 33 H 0.072 0.928 34 H 0.060 0.940 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.387 0.613 38 H 0.117 0.883 39 H 0.106 0.894 40 H 0.292 0.708 41 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.589 10.645 -5.012 11.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.828 5.828 3 C -0.022 4.022 4 C 0.062 3.938 5 C -0.200 4.200 6 C -0.235 4.235 7 O -0.362 6.362 8 S 2.801 3.199 9 O -0.968 6.968 10 O -0.958 6.958 11 C -0.890 4.890 12 C -0.012 4.012 13 C -0.257 4.257 14 C 0.137 3.863 15 C -0.452 4.452 16 H 0.111 0.889 17 C -0.155 4.155 18 N -0.382 5.382 19 Si 0.744 3.256 20 H -0.179 1.179 21 H -0.191 1.191 22 H -0.193 1.193 23 C -0.189 4.189 24 C 0.046 3.954 25 Cl -0.071 7.071 26 H 0.075 0.925 27 H 0.089 0.911 28 H 0.098 0.902 29 H 0.100 0.900 30 H 0.100 0.900 31 H 0.085 0.915 32 H 0.077 0.923 33 H 0.090 0.910 34 H 0.079 0.921 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.237 0.763 38 H 0.134 0.866 39 H 0.124 0.876 40 H 0.103 0.897 41 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -2.319 9.975 -6.121 11.930 hybrid contribution 0.369 -0.019 2.019 2.053 sum -1.950 9.955 -4.102 10.942 Atomic orbital electron populations 1.21855 0.79195 1.03312 1.02253 1.57337 1.14613 1.20812 1.90024 1.21890 0.97208 0.86579 0.96565 1.21633 0.92866 0.87982 0.91277 1.21889 0.94855 1.02508 1.00709 1.22454 1.00792 0.97555 1.02686 1.86491 1.33147 1.61064 1.55548 1.01132 0.72466 0.72031 0.74264 1.93358 1.44887 1.84987 1.73567 1.93518 1.64024 1.56432 1.81831 1.29307 0.99762 1.36395 1.23561 1.20188 0.92526 0.92656 0.95877 1.21105 0.98083 1.13276 0.93263 1.17734 0.90544 0.85395 0.92586 1.20007 1.05925 1.23956 0.95317 0.88940 1.26206 0.93478 0.93304 1.02507 1.69795 1.12836 1.16572 1.39044 0.86026 0.79988 0.79469 0.80121 1.17891 1.19134 1.19348 1.21342 0.97789 1.06642 0.93166 1.20059 0.81698 0.99213 0.94382 1.98309 1.21664 1.96795 1.90310 0.92518 0.91104 0.90227 0.89983 0.90040 0.91541 0.92318 0.90953 0.92089 0.91739 0.91707 0.76261 0.86551 0.87573 0.89650 0.84661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.12 7.88 59.85 0.47 1.59 16 2 N -0.99 -15.70 2.88 -121.76 -0.35 -16.05 16 3 C 0.10 1.36 4.70 -4.05 -0.02 1.34 16 4 C 0.11 1.28 1.17 -90.62 -0.11 1.17 16 5 C -0.14 -1.57 7.51 37.16 0.28 -1.30 16 6 C -0.18 -1.66 8.82 37.16 0.33 -1.34 16 7 O -0.55 -8.34 11.34 -56.42 -0.64 -8.98 16 8 S 2.71 53.70 5.00 -107.50 -0.54 53.16 16 9 O -0.98 -19.46 13.15 -65.95 -0.87 -20.33 16 10 O -0.97 -21.79 14.82 -57.17 -0.85 -22.63 16 11 C -0.80 -17.52 5.94 -39.25 -0.23 -17.76 16 12 C 0.01 0.17 9.52 -39.66 -0.38 -0.21 16 13 C -0.24 -5.33 9.79 -38.87 -0.38 -5.71 16 14 C 0.14 3.45 5.57 -106.83 -0.60 2.85 16 15 C -0.43 -9.94 9.07 -37.74 -0.34 -10.28 16 16 H 0.09 2.02 7.89 -52.48 -0.41 1.60 16 17 C 0.07 1.50 5.20 -17.34 -0.09 1.41 16 18 N -0.76 -17.70 10.84 55.55 0.60 -17.10 16 19 Si 0.92 16.33 29.58 -169.99 -5.03 11.30 16 20 H -0.26 -4.46 7.11 56.52 0.40 -4.05 16 21 H -0.27 -4.67 7.11 56.52 0.40 -4.27 16 22 H -0.27 -4.73 7.11 56.52 0.40 -4.32 16 23 C -0.17 -4.12 8.46 -38.84 -0.33 -4.45 16 24 C 0.07 1.72 6.29 -39.58 -0.25 1.47 16 25 Cl -0.10 -2.03 22.99 -51.86 -1.19 -3.22 16 26 H 0.06 0.80 6.34 -51.93 -0.33 0.47 16 27 H 0.07 0.78 5.52 -51.93 -0.29 0.49 16 28 H 0.08 1.22 6.98 -51.93 -0.36 0.86 16 29 H 0.08 0.88 8.10 -51.93 -0.42 0.46 16 30 H 0.08 1.06 7.79 -51.93 -0.40 0.66 16 31 H 0.07 0.58 8.04 -51.93 -0.42 0.16 16 32 H 0.06 0.62 8.14 -51.92 -0.42 0.20 16 33 H 0.07 0.89 5.68 -51.93 -0.29 0.59 16 34 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.39 5.48 7.58 45.56 0.35 5.83 16 38 H 0.12 2.24 7.31 -52.49 -0.38 1.86 16 39 H 0.11 2.16 8.06 -52.48 -0.42 1.74 16 40 H 0.29 6.08 8.30 -40.82 -0.34 5.74 16 41 H 0.14 3.37 6.11 -52.49 -0.32 3.05 16 LS Contribution 348.10 15.07 5.25 5.25 Total: -1.00 -28.57 348.10 -9.80 -38.37 By element: Atomic # 1 Polarization: 15.98 SS G_CDS: -4.54 Total: 11.45 kcal Atomic # 6 Polarization: -29.56 SS G_CDS: -1.64 Total: -31.20 kcal Atomic # 7 Polarization: -33.40 SS G_CDS: 0.25 Total: -33.15 kcal Atomic # 8 Polarization: -49.59 SS G_CDS: -2.35 Total: -51.95 kcal Atomic # 14 Polarization: 16.33 SS G_CDS: -5.03 Total: 11.30 kcal Atomic # 16 Polarization: 53.70 SS G_CDS: -0.54 Total: 53.16 kcal Atomic # 17 Polarization: -2.03 SS G_CDS: -1.19 Total: -3.22 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -28.57 -9.80 -38.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451353351.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.863 kcal (2) G-P(sol) polarization free energy of solvation -28.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds