Wall clock time and date at job start Wed Apr 1 2020 04:23:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86796 * 119.99763 * 2 1 4 4 H 1.48507 * 109.47003 * 239.99691 * 3 2 1 5 5 H 1.48498 * 109.47335 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47450 * 119.99843 * 3 2 1 7 7 C 1.39942 * 119.99902 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00046 * 197.85782 * 7 2 1 9 9 C 1.41402 * 120.00052 * 17.86558 * 7 2 1 10 10 C 1.40740 * 120.23671 * 204.37458 * 9 7 2 11 11 C 1.37601 * 119.77192 * 180.02562 * 10 9 7 12 12 C 1.38629 * 120.26043 * 359.72858 * 11 10 9 13 13 S 1.76201 * 119.75664 * 180.29453 * 12 11 10 14 14 O 1.42104 * 106.40404 * 228.79507 * 13 12 11 15 15 O 1.42092 * 106.40210 * 1.71352 * 13 12 11 16 16 N 1.65601 * 107.21800 * 115.25353 * 13 12 11 17 17 C 1.46503 * 119.99744 * 65.00068 * 16 13 12 18 18 C 1.52998 * 109.46924 * 164.99729 * 17 16 13 19 19 C 1.53004 * 109.47301 * 180.02562 * 18 17 16 20 20 C 1.52998 * 109.47096 * 180.02562 * 19 18 17 21 21 C 1.53011 * 109.46866 * 179.97438 * 20 19 18 22 22 O 1.42891 * 109.46963 * 179.97438 * 21 20 19 23 23 C 1.38736 * 120.48989 * 0.55098 * 12 11 10 24 24 Cl 1.73593 * 119.89150 * 179.71979 * 23 12 11 25 25 C 1.37757 * 120.21653 * 359.45077 * 23 12 11 26 26 H 0.97000 * 119.99707 * 0.02562 * 1 2 3 27 27 H 1.08002 * 120.11277 * 0.04479 * 10 9 7 28 28 H 1.07995 * 119.86732 * 180.02562 * 11 10 9 29 29 H 0.96990 * 120.00350 * 244.99730 * 16 13 12 30 30 H 1.08997 * 109.47570 * 285.00003 * 17 16 13 31 31 H 1.09004 * 109.47274 * 45.00141 * 17 16 13 32 32 H 1.09001 * 109.47531 * 300.00108 * 18 17 16 33 33 H 1.09000 * 109.47278 * 60.00215 * 18 17 16 34 34 H 1.09001 * 109.46770 * 300.00395 * 19 18 17 35 35 H 1.09000 * 109.46926 * 59.99820 * 19 18 17 36 36 H 1.08993 * 109.47170 * 299.99283 * 20 19 18 37 37 H 1.08997 * 109.47656 * 60.00358 * 20 19 18 38 38 H 1.09001 * 109.46998 * 299.99876 * 21 20 19 39 39 H 1.09000 * 109.46928 * 59.99442 * 21 20 19 40 40 H 0.96694 * 114.00218 * 180.02562 * 22 21 20 41 41 H 1.08004 * 120.13277 * 180.25593 * 25 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.0960 1.6964 -1.2125 5 1 1.2772 2.7464 -0.0006 6 1 3.0960 1.6965 1.2125 7 6 2.0080 -1.2119 0.0005 8 1 3.0489 -1.2344 0.2874 9 6 1.3521 -2.4072 -0.3746 10 6 1.8261 -3.6500 0.0852 11 6 1.1808 -4.8072 -0.2863 12 6 0.0640 -4.7521 -1.1058 13 16 -0.7566 -6.2416 -1.5669 14 8 -0.9350 -6.1820 -2.9754 15 8 -0.0660 -7.2986 -0.9151 16 7 -2.2721 -6.1926 -0.9011 17 6 -3.2328 -5.1777 -1.3408 18 6 -4.6360 -5.5662 -0.8706 19 6 -5.6395 -4.5067 -1.3303 20 6 -7.0426 -4.8948 -0.8595 21 6 -8.0460 -3.8349 -1.3187 22 8 -9.3565 -4.1977 -0.8795 23 6 -0.4091 -3.5333 -1.5700 24 17 -1.8045 -3.4830 -2.6013 25 6 0.2216 -2.3625 -1.2106 26 1 -0.4850 0.8401 -0.0004 27 1 2.6931 -3.6953 0.7275 28 1 1.5429 -5.7617 0.0660 29 1 -2.5237 -6.8358 -0.2201 30 1 -2.9614 -4.2118 -0.9151 31 1 -3.2195 -5.1120 -2.4288 32 1 -4.9075 -6.5322 -1.2963 33 1 -4.6494 -5.6320 0.2174 34 1 -5.3682 -3.5405 -0.9049 35 1 -5.6260 -4.4413 -2.4182 36 1 -7.3141 -5.8610 -1.2846 37 1 -7.0558 -4.9599 0.2285 38 1 -7.7743 -2.8689 -0.8932 39 1 -8.0329 -3.7694 -2.4066 40 1 -10.0453 -3.5695 -1.1361 41 1 -0.1503 -1.4141 -1.5693 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451477139.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:23:29 Heat of formation + Delta-G solvation = -152.339767 kcal Electronic energy + Delta-G solvation = -25982.612418 eV Core-core repulsion = 22013.520771 eV Total energy + Delta-G solvation = -3969.091647 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.079 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.62681 -38.47930 -38.15188 -37.51289 -37.08024 -36.76107 -35.81589 -34.67536 -32.07561 -31.24634 -30.50673 -27.77191 -26.06500 -23.61590 -23.07906 -22.87765 -22.09257 -20.34288 -19.59448 -18.74357 -18.22911 -18.16472 -17.32713 -17.24313 -16.92439 -16.22232 -16.09786 -15.84218 -15.35803 -15.17346 -15.04025 -14.50926 -14.50225 -14.12225 -14.00891 -13.86370 -13.41189 -13.18273 -13.09572 -13.04539 -12.95091 -12.74583 -12.60174 -12.57296 -12.28502 -12.17434 -12.03043 -11.83094 -11.75781 -11.60561 -11.47753 -11.24921 -10.92736 -10.86489 -10.30130 -9.87830 -9.45997 -8.93498 -6.72715 -0.32801 0.31084 0.85524 1.20200 1.36621 1.44273 1.50988 2.09766 2.20903 2.44039 2.86984 3.28843 3.37502 3.63618 3.95853 3.99371 4.12966 4.22529 4.24020 4.43960 4.48567 4.59836 4.66550 4.67383 4.82249 4.88213 4.91480 4.93505 4.97296 5.04814 5.06789 5.24125 5.24278 5.37798 5.39829 5.44448 5.53809 5.79754 6.00224 6.21696 6.31079 6.57611 6.63370 6.89444 8.00259 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.009480 B = 0.003661 C = 0.002818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2952.847811 B = 7647.088995 C = 9935.098788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.785 5.785 2 C 0.035 3.965 3 Si 0.991 3.009 4 H -0.258 1.258 5 H -0.264 1.264 6 H -0.253 1.253 7 C -0.448 4.448 8 H 0.100 0.900 9 C 0.113 3.887 10 C -0.251 4.251 11 C 0.004 3.996 12 C -0.807 4.807 13 S 2.721 3.279 14 O -0.990 6.990 15 O -1.000 7.000 16 N -1.108 6.108 17 C 0.106 3.894 18 C -0.121 4.121 19 C -0.114 4.114 20 C -0.116 4.116 21 C 0.071 3.929 22 O -0.597 6.597 23 C 0.063 3.937 24 Cl -0.076 7.076 25 C -0.190 4.190 26 H 0.302 0.698 27 H 0.121 0.879 28 H 0.135 0.865 29 H 0.425 0.575 30 H 0.064 0.936 31 H 0.072 0.928 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.067 0.933 35 H 0.069 0.931 36 H 0.068 0.932 37 H 0.065 0.935 38 H 0.052 0.948 39 H 0.055 0.945 40 H 0.397 0.603 41 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.176 -1.089 -0.299 11.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.407 5.407 2 C -0.186 4.186 3 Si 0.811 3.189 4 H -0.183 1.183 5 H -0.188 1.188 6 H -0.177 1.177 7 C -0.474 4.474 8 H 0.118 0.882 9 C 0.109 3.891 10 C -0.272 4.272 11 C -0.016 4.016 12 C -0.899 4.899 13 S 2.815 3.185 14 O -0.980 6.980 15 O -0.991 6.991 16 N -0.869 5.869 17 C -0.020 4.020 18 C -0.160 4.160 19 C -0.153 4.153 20 C -0.154 4.154 21 C -0.006 4.006 22 O -0.406 6.406 23 C 0.035 3.965 24 Cl -0.047 7.047 25 C -0.211 4.211 26 H 0.114 0.886 27 H 0.139 0.861 28 H 0.152 0.848 29 H 0.261 0.739 30 H 0.083 0.917 31 H 0.090 0.910 32 H 0.098 0.902 33 H 0.097 0.903 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.070 0.930 39 H 0.073 0.927 40 H 0.246 0.754 41 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -10.836 -1.997 -0.792 11.046 hybrid contribution -0.029 1.621 0.338 1.657 sum -10.865 -0.375 -0.454 10.881 Atomic orbital electron populations 1.69812 1.09314 1.32350 1.29185 1.27033 0.95626 1.05237 0.90738 0.85078 0.78846 0.74489 0.80533 1.18263 1.18751 1.17717 1.20280 0.99172 0.91641 1.36268 0.88209 1.18083 0.90130 0.93659 0.87206 1.21351 1.05378 0.92374 1.08072 1.20458 0.91306 0.98572 0.91237 1.29523 1.17876 1.15726 1.26822 1.00458 0.72268 0.72704 0.73060 1.93506 1.85945 1.87493 1.31045 1.93452 1.73643 1.54948 1.77026 1.55214 1.29625 1.44541 1.57531 1.22153 0.89526 0.90666 0.99634 1.21799 0.91865 1.00031 1.02298 1.21408 0.93239 0.98984 1.01655 1.21462 0.93072 0.99112 1.01706 1.22262 0.82442 0.97525 0.98410 1.86411 1.18408 1.54298 1.81493 1.20238 0.89001 0.94421 0.92864 1.98308 1.40034 1.98512 1.67842 1.21272 1.00598 0.95916 1.03330 0.88641 0.86087 0.84768 0.73877 0.91749 0.90976 0.90177 0.90252 0.91439 0.91198 0.91360 0.91605 0.92979 0.92712 0.75362 0.85851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -35.36 10.95 21.83 0.24 -35.12 16 2 C 0.03 1.50 5.14 85.26 0.44 1.94 16 3 Si 0.99 32.30 29.59 68.60 2.03 34.33 16 4 H -0.26 -8.40 7.11 99.48 0.71 -7.69 16 5 H -0.26 -8.10 7.11 99.48 0.71 -7.40 16 6 H -0.25 -7.95 7.11 99.48 0.71 -7.24 16 7 C -0.45 -20.95 9.05 23.46 0.21 -20.73 16 8 H 0.10 4.35 7.91 -2.91 -0.02 4.32 16 9 C 0.11 5.59 5.57 -21.29 -0.12 5.47 16 10 C -0.25 -11.51 9.79 22.73 0.22 -11.29 16 11 C 0.00 0.18 9.52 22.21 0.21 0.39 16 12 C -0.81 -35.35 5.91 22.48 0.13 -35.22 16 13 S 2.72 104.63 5.44 -56.49 -0.31 104.32 16 14 O -0.99 -42.16 15.94 -128.00 -2.04 -44.20 16 15 O -1.00 -40.95 16.94 -128.00 -2.17 -43.12 16 16 N -1.11 -33.18 6.00 -187.49 -1.12 -34.30 16 17 C 0.11 3.02 4.10 86.38 0.35 3.37 16 18 C -0.12 -2.53 5.36 30.59 0.16 -2.37 16 19 C -0.11 -2.18 5.21 30.59 0.16 -2.02 16 20 C -0.12 -2.06 5.58 30.60 0.17 -1.89 16 21 C 0.07 1.15 7.05 71.99 0.51 1.66 16 22 O -0.60 -10.39 13.66 -148.98 -2.03 -12.43 16 23 C 0.06 2.85 6.08 22.28 0.14 2.99 16 24 Cl -0.08 -2.93 20.52 -2.72 -0.06 -2.99 16 25 C -0.19 -9.33 8.47 22.75 0.19 -9.13 16 26 H 0.30 12.08 8.30 -92.71 -0.77 11.31 16 27 H 0.12 4.99 8.06 -2.91 -0.02 4.97 16 28 H 0.13 5.28 7.31 -2.91 -0.02 5.26 16 29 H 0.42 10.15 8.65 -96.75 -0.84 9.31 16 30 H 0.06 2.02 6.14 -2.39 -0.01 2.00 16 31 H 0.07 2.19 5.86 -2.38 -0.01 2.17 16 32 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 40 H 0.40 3.17 9.12 -74.06 -0.68 2.49 16 41 H 0.12 6.17 6.16 -2.91 -0.02 6.15 16 Total: -1.00 -62.06 359.85 -3.11 -65.17 By element: Atomic # 1 Polarization: 35.60 SS G_CDS: -0.43 Total: 35.17 kcal Atomic # 6 Polarization: -69.61 SS G_CDS: 2.78 Total: -66.83 kcal Atomic # 7 Polarization: -68.54 SS G_CDS: -0.89 Total: -69.42 kcal Atomic # 8 Polarization: -93.51 SS G_CDS: -6.24 Total: -99.75 kcal Atomic # 14 Polarization: 32.30 SS G_CDS: 2.03 Total: 34.33 kcal Atomic # 16 Polarization: 104.63 SS G_CDS: -0.31 Total: 104.32 kcal Atomic # 17 Polarization: -2.93 SS G_CDS: -0.06 Total: -2.99 kcal Total: -62.06 -3.11 -65.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451477139.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.168 kcal (2) G-P(sol) polarization free energy of solvation -62.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds