Wall clock time and date at job start Wed Apr 1 2020 05:01:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47423 * 2 1 4 4 H 1.09009 * 109.46899 * 303.51560 * 3 2 1 5 5 N 1.46499 * 109.47278 * 63.51214 * 3 2 1 6 6 S 1.65595 * 120.00487 * 232.44362 * 5 3 2 7 7 O 1.42096 * 106.40533 * 175.04325 * 6 5 3 8 8 O 1.42107 * 106.39972 * 307.96449 * 6 5 3 9 9 C 1.76201 * 107.21841 * 61.50061 * 6 5 3 10 10 C 1.38631 * 119.75604 * 92.03634 * 9 6 5 11 11 C 1.37599 * 120.26568 * 179.76468 * 10 9 6 12 12 C 1.40743 * 119.76774 * 0.51386 * 11 10 9 13 13 C 1.41398 * 120.23813 * 179.76976 * 12 11 10 14 14 H 1.07994 * 120.00323 * 151.18401 * 13 12 11 15 15 C 1.39950 * 119.99522 * 331.18361 * 13 12 11 16 16 N 1.30828 * 119.99485 * 163.96389 * 15 13 12 17 17 Si 1.86789 * 120.00343 * 343.95998 * 15 13 12 18 18 H 1.48504 * 109.47299 * 93.40131 * 17 15 13 19 19 H 1.48498 * 109.47516 * 213.40302 * 17 15 13 20 20 H 1.48505 * 109.46997 * 333.40300 * 17 15 13 21 21 C 1.40679 * 119.52459 * 359.74082 * 12 11 10 22 22 C 1.37754 * 119.73110 * 0.02562 * 21 12 11 23 23 Cl 1.73596 * 119.88660 * 179.97438 * 22 21 12 24 24 C 1.52999 * 109.47002 * 183.52023 * 3 2 1 25 25 H 1.08998 * 109.47656 * 65.00095 * 24 3 2 26 26 C 1.53005 * 109.46821 * 185.00175 * 24 3 2 27 27 O 1.42904 * 109.46816 * 304.99446 * 24 3 2 28 28 H 1.09005 * 109.47165 * 301.37439 * 1 2 3 29 29 H 1.09005 * 109.47423 * 61.37014 * 1 2 3 30 30 H 1.08997 * 109.47261 * 181.37309 * 1 2 3 31 31 H 1.09002 * 109.46839 * 239.99691 * 2 1 3 32 32 H 1.08996 * 109.46858 * 120.00476 * 2 1 3 33 33 H 0.97009 * 119.99319 * 52.44780 * 5 3 2 34 34 H 1.08006 * 119.86906 * 359.97438 * 10 9 6 35 35 H 1.08004 * 120.12024 * 180.22989 * 11 10 9 36 36 H 0.96998 * 119.99696 * 180.02562 * 16 15 13 37 37 H 1.08002 * 120.12813 * 180.02562 * 21 12 11 38 38 H 1.09001 * 109.47526 * 59.99333 * 26 24 3 39 39 H 1.08999 * 109.46928 * 179.97438 * 26 24 3 40 40 H 1.09001 * 109.47192 * 299.99421 * 26 24 3 41 41 H 0.96701 * 113.99787 * 300.00389 * 27 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6262 1.9741 -0.8569 5 7 1.6221 2.1082 1.2362 6 16 0.8238 3.5574 1.1671 7 8 0.4580 3.8781 2.5022 8 8 1.6133 4.4119 0.3510 9 6 -0.6803 3.2831 0.2913 10 6 -1.8338 2.9604 0.9891 11 6 -3.0152 2.7488 0.3162 12 6 -3.0478 2.8503 -1.0872 13 6 -4.2553 2.6301 -1.7892 14 1 -4.4303 3.1271 -2.7319 15 6 -5.2237 1.7679 -1.2623 16 7 -6.4468 1.7968 -1.7258 17 14 -4.7699 0.5761 0.1025 18 1 -5.0664 1.1953 1.4193 19 1 -5.5606 -0.6719 -0.0469 20 1 -3.3218 0.2575 0.0202 21 6 -1.8706 3.1731 -1.7865 22 6 -0.7000 3.3856 -1.0921 23 17 0.7552 3.7836 -1.9509 24 6 3.5675 1.4432 -0.0886 25 1 3.8761 1.0283 -1.0481 26 6 4.0848 2.8777 0.0369 27 8 4.1063 0.6483 0.9697 28 1 -0.3634 0.5351 0.8774 29 1 -0.3634 0.4924 -0.9020 30 1 -0.3633 -1.0273 0.0246 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.8131 1.7001 2.0953 34 1 -1.8059 2.8780 2.0657 35 1 -3.9133 2.5011 0.8625 36 1 -7.1180 1.1995 -1.3604 37 1 -1.8846 3.2540 -2.8634 38 1 3.7762 3.2927 0.9964 39 1 5.1730 2.8782 -0.0258 40 1 3.6738 3.4840 -0.7703 41 1 3.8716 0.9601 1.8545 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451915178.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:01:26 Heat of formation + Delta-G solvation = -123.863713 kcal Electronic energy + Delta-G solvation = -28053.336820 eV Core-core repulsion = 24085.479988 eV Total energy + Delta-G solvation = -3967.856832 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.079 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -38.79587 -38.19056 -36.67393 -35.85017 -35.24720 -35.00492 -34.11171 -31.60791 -31.03969 -30.43637 -29.90731 -26.19399 -26.01386 -22.12465 -21.95082 -21.52614 -20.92138 -19.25993 -18.00909 -17.63125 -17.23302 -16.58206 -15.91517 -15.67000 -15.08111 -14.71973 -14.67529 -14.34699 -14.13697 -13.89320 -13.44951 -13.14624 -13.00057 -12.90045 -12.71300 -12.40796 -11.97964 -11.93411 -11.83772 -11.57737 -11.51473 -11.45343 -11.30702 -11.16272 -11.08332 -11.03649 -10.74799 -10.70599 -10.43905 -10.28243 -10.22627 -10.08274 -9.68726 -9.46990 -9.09882 -8.38030 -7.97468 -7.50839 -5.12950 1.03867 1.75774 2.24889 2.72144 2.79238 2.92419 2.98720 3.48742 3.58313 3.91203 4.30906 4.32038 4.74633 4.86800 4.92998 5.02012 5.18150 5.35011 5.40694 5.44856 5.64338 5.73364 5.89580 5.92368 5.99855 6.03213 6.17195 6.20530 6.24353 6.25876 6.37834 6.45670 6.56456 6.64113 6.78271 6.88886 6.96052 7.16848 7.34657 7.50290 7.57392 7.77339 8.07071 8.19327 9.46942 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.015919 B = 0.004679 C = 0.004430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1758.447900 B = 5983.245577 C = 6318.997927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.122 4.122 3 C 0.114 3.886 4 H 0.107 0.893 5 N -1.117 6.117 6 S 2.690 3.310 7 O -0.985 6.985 8 O -0.957 6.957 9 C -0.793 4.793 10 C 0.028 3.972 11 C -0.253 4.253 12 C 0.120 3.880 13 C -0.399 4.399 14 H 0.102 0.898 15 C 0.078 3.922 16 N -0.770 5.770 17 Si 0.917 3.083 18 H -0.263 1.263 19 H -0.285 1.285 20 H -0.235 1.235 21 C -0.207 4.207 22 C 0.088 3.912 23 Cl -0.076 7.076 24 C 0.095 3.905 25 H 0.103 0.897 26 C -0.182 4.182 27 O -0.562 6.562 28 H 0.059 0.941 29 H 0.061 0.939 30 H 0.049 0.951 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.407 0.593 34 H 0.116 0.884 35 H 0.110 0.890 36 H 0.297 0.703 37 H 0.117 0.883 38 H 0.058 0.942 39 H 0.055 0.945 40 H 0.079 0.921 41 H 0.370 0.630 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.050 -4.254 2.947 12.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.161 4.161 3 C 0.007 3.993 4 H 0.124 0.876 5 N -0.873 5.873 6 S 2.786 3.214 7 O -0.976 6.976 8 O -0.947 6.947 9 C -0.887 4.887 10 C 0.008 3.992 11 C -0.273 4.273 12 C 0.115 3.885 13 C -0.425 4.425 14 H 0.120 0.880 15 C -0.147 4.147 16 N -0.390 5.390 17 Si 0.742 3.258 18 H -0.189 1.189 19 H -0.212 1.212 20 H -0.158 1.158 21 C -0.228 4.228 22 C 0.060 3.940 23 Cl -0.047 7.047 24 C 0.034 3.966 25 H 0.121 0.879 26 C -0.239 4.239 27 O -0.366 6.366 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.069 0.931 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.240 0.760 34 H 0.134 0.866 35 H 0.128 0.872 36 H 0.108 0.892 37 H 0.135 0.865 38 H 0.077 0.923 39 H 0.074 0.926 40 H 0.098 0.902 41 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 11.413 -3.735 2.466 12.259 hybrid contribution -0.885 -0.680 0.835 1.394 sum 10.527 -4.415 3.301 11.883 Atomic orbital electron populations 1.21829 0.94782 1.01370 1.03265 1.21735 0.96587 0.95214 1.02602 1.21790 0.95053 0.95056 0.87428 0.87575 1.55810 1.74906 1.43304 1.13300 1.01543 0.73949 0.72691 0.73216 1.93505 1.84498 1.82520 1.37033 1.93621 1.68737 1.62980 1.69403 1.29065 1.18781 1.37979 1.02918 1.20115 0.90971 0.90420 0.97697 1.21082 0.97525 1.14231 0.94445 1.17736 0.91857 0.87407 0.91482 1.19913 0.96182 1.19693 1.06675 0.87963 1.26442 0.93499 0.97676 0.97082 1.69644 1.02327 1.30776 1.36248 0.86204 0.81791 0.78139 0.79616 1.18867 1.21237 1.15754 1.20947 0.90749 1.12299 0.98756 1.20046 0.87182 0.96538 0.90228 1.98348 1.36756 1.91778 1.77784 1.22320 0.91653 0.91410 0.91206 0.87882 1.22479 1.00863 0.96509 1.04073 1.86537 1.76805 1.56055 1.17251 0.92224 0.92031 0.93150 0.91301 0.91246 0.75981 0.86622 0.87224 0.89240 0.86462 0.92294 0.92555 0.90172 0.78306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.20 9.62 37.16 0.36 -1.84 16 2 C -0.12 -1.46 5.36 -26.73 -0.14 -1.60 16 3 C 0.11 1.43 2.16 -67.93 -0.15 1.29 16 4 H 0.11 1.49 4.55 -51.92 -0.24 1.25 16 5 N -1.12 -14.40 3.56 -4.89 -0.02 -14.42 16 6 S 2.69 45.94 5.31 -107.50 -0.57 45.37 16 7 O -0.98 -19.11 17.21 -57.17 -0.98 -20.09 16 8 O -0.96 -17.42 12.48 -57.17 -0.71 -18.13 16 9 C -0.79 -15.22 5.37 -39.25 -0.21 -15.43 16 10 C 0.03 0.56 9.22 -39.67 -0.37 0.19 16 11 C -0.25 -5.40 7.11 -38.87 -0.28 -5.67 16 12 C 0.12 2.66 5.15 -106.83 -0.55 2.11 16 13 C -0.40 -9.28 9.59 -37.74 -0.36 -9.65 16 14 H 0.10 2.47 8.06 -52.49 -0.42 2.05 16 15 C 0.08 1.75 5.44 -17.34 -0.09 1.66 16 16 N -0.77 -17.69 13.93 55.55 0.77 -16.92 16 17 Si 0.92 17.95 24.43 -169.99 -4.15 13.80 16 18 H -0.26 -5.03 6.63 56.52 0.37 -4.65 16 19 H -0.29 -5.40 7.11 56.52 0.40 -5.00 16 20 H -0.23 -4.61 6.79 56.52 0.38 -4.23 16 21 C -0.21 -4.29 9.57 -38.84 -0.37 -4.66 16 22 C 0.09 1.72 6.05 -39.58 -0.24 1.48 16 23 Cl -0.08 -1.31 22.95 -51.86 -1.19 -2.50 16 24 C 0.09 1.08 3.50 -26.73 -0.09 0.99 16 25 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 26 C -0.18 -2.21 8.26 37.16 0.31 -1.91 16 27 O -0.56 -6.17 12.53 -35.23 -0.44 -6.61 16 28 H 0.06 0.89 7.08 -51.93 -0.37 0.52 16 29 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.07 0.76 7.68 -51.93 -0.40 0.36 16 33 H 0.41 4.17 8.34 -34.47 -0.29 3.88 16 34 H 0.12 2.11 7.55 -52.48 -0.40 1.71 16 35 H 0.11 2.29 4.37 -52.48 -0.23 2.06 16 36 H 0.30 6.09 8.30 -40.82 -0.34 5.75 16 37 H 0.12 2.30 8.06 -52.49 -0.42 1.88 16 38 H 0.06 0.74 6.87 -51.93 -0.36 0.38 16 39 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.08 1.08 7.63 -51.93 -0.40 0.68 16 41 H 0.37 3.10 8.20 45.56 0.37 3.48 16 LS Contribution 346.74 15.07 5.23 5.23 Total: -1.00 -26.48 346.74 -8.69 -35.17 By element: Atomic # 1 Polarization: 16.57 SS G_CDS: -4.43 Total: 12.14 kcal Atomic # 6 Polarization: -30.85 SS G_CDS: -2.19 Total: -33.04 kcal Atomic # 7 Polarization: -32.09 SS G_CDS: 0.76 Total: -31.33 kcal Atomic # 8 Polarization: -42.69 SS G_CDS: -2.14 Total: -44.83 kcal Atomic # 14 Polarization: 17.95 SS G_CDS: -4.15 Total: 13.80 kcal Atomic # 16 Polarization: 45.94 SS G_CDS: -0.57 Total: 45.37 kcal Atomic # 17 Polarization: -1.31 SS G_CDS: -1.19 Total: -2.50 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -26.48 -8.69 -35.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451915178.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.693 kcal (2) G-P(sol) polarization free energy of solvation -26.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds