Wall clock time and date at job start Wed Apr 1 2020 05:01:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47423 * 2 1 4 4 H 1.09009 * 109.46899 * 303.51560 * 3 2 1 5 5 N 1.46499 * 109.47278 * 63.51214 * 3 2 1 6 6 S 1.65595 * 120.00487 * 232.44362 * 5 3 2 7 7 O 1.42096 * 106.40533 * 175.04325 * 6 5 3 8 8 O 1.42107 * 106.39972 * 307.96449 * 6 5 3 9 9 C 1.76201 * 107.21841 * 61.50061 * 6 5 3 10 10 C 1.38631 * 119.75604 * 92.03634 * 9 6 5 11 11 C 1.37599 * 120.26568 * 179.76468 * 10 9 6 12 12 C 1.40743 * 119.76774 * 0.51386 * 11 10 9 13 13 C 1.41398 * 120.23813 * 179.76976 * 12 11 10 14 14 H 1.07994 * 120.00323 * 151.18401 * 13 12 11 15 15 C 1.39950 * 119.99522 * 331.18361 * 13 12 11 16 16 N 1.30828 * 119.99485 * 163.96389 * 15 13 12 17 17 Si 1.86789 * 120.00343 * 343.95998 * 15 13 12 18 18 H 1.48504 * 109.47299 * 93.40131 * 17 15 13 19 19 H 1.48498 * 109.47516 * 213.40302 * 17 15 13 20 20 H 1.48505 * 109.46997 * 333.40300 * 17 15 13 21 21 C 1.40679 * 119.52459 * 359.74082 * 12 11 10 22 22 C 1.37754 * 119.73110 * 0.02562 * 21 12 11 23 23 Cl 1.73596 * 119.88660 * 179.97438 * 22 21 12 24 24 C 1.52999 * 109.47002 * 183.52023 * 3 2 1 25 25 H 1.08998 * 109.47656 * 65.00095 * 24 3 2 26 26 C 1.53005 * 109.46821 * 185.00175 * 24 3 2 27 27 O 1.42904 * 109.46816 * 304.99446 * 24 3 2 28 28 H 1.09005 * 109.47165 * 301.37439 * 1 2 3 29 29 H 1.09005 * 109.47423 * 61.37014 * 1 2 3 30 30 H 1.08997 * 109.47261 * 181.37309 * 1 2 3 31 31 H 1.09002 * 109.46839 * 239.99691 * 2 1 3 32 32 H 1.08996 * 109.46858 * 120.00476 * 2 1 3 33 33 H 0.97009 * 119.99319 * 52.44780 * 5 3 2 34 34 H 1.08006 * 119.86906 * 359.97438 * 10 9 6 35 35 H 1.08004 * 120.12024 * 180.22989 * 11 10 9 36 36 H 0.96998 * 119.99696 * 180.02562 * 16 15 13 37 37 H 1.08002 * 120.12813 * 180.02562 * 21 12 11 38 38 H 1.09001 * 109.47526 * 59.99333 * 26 24 3 39 39 H 1.08999 * 109.46928 * 179.97438 * 26 24 3 40 40 H 1.09001 * 109.47192 * 299.99421 * 26 24 3 41 41 H 0.96701 * 113.99787 * 300.00389 * 27 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6262 1.9741 -0.8569 5 7 1.6221 2.1082 1.2362 6 16 0.8238 3.5574 1.1671 7 8 0.4580 3.8781 2.5022 8 8 1.6133 4.4119 0.3510 9 6 -0.6803 3.2831 0.2913 10 6 -1.8338 2.9604 0.9891 11 6 -3.0152 2.7488 0.3162 12 6 -3.0478 2.8503 -1.0872 13 6 -4.2553 2.6301 -1.7892 14 1 -4.4303 3.1271 -2.7319 15 6 -5.2237 1.7679 -1.2623 16 7 -6.4468 1.7968 -1.7258 17 14 -4.7699 0.5761 0.1025 18 1 -5.0664 1.1953 1.4193 19 1 -5.5606 -0.6719 -0.0469 20 1 -3.3218 0.2575 0.0202 21 6 -1.8706 3.1731 -1.7865 22 6 -0.7000 3.3856 -1.0921 23 17 0.7552 3.7836 -1.9509 24 6 3.5675 1.4432 -0.0886 25 1 3.8761 1.0283 -1.0481 26 6 4.0848 2.8777 0.0369 27 8 4.1063 0.6483 0.9697 28 1 -0.3634 0.5351 0.8774 29 1 -0.3634 0.4924 -0.9020 30 1 -0.3633 -1.0273 0.0246 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.8131 1.7001 2.0953 34 1 -1.8059 2.8780 2.0657 35 1 -3.9133 2.5011 0.8625 36 1 -7.1180 1.1995 -1.3604 37 1 -1.8846 3.2540 -2.8634 38 1 3.7762 3.2927 0.9964 39 1 5.1730 2.8782 -0.0258 40 1 3.6738 3.4840 -0.7703 41 1 3.8716 0.9601 1.8545 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451915178.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:01:25 Heat of formation + Delta-G solvation = -142.662465 kcal Electronic energy + Delta-G solvation = -28054.151995 eV Core-core repulsion = 24085.479988 eV Total energy + Delta-G solvation = -3968.672007 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.079 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.94274 -39.65445 -38.14286 -37.37387 -36.71978 -35.99549 -35.74761 -32.80252 -32.58326 -31.54057 -31.39654 -27.69466 -27.22601 -23.75448 -23.14856 -22.90180 -21.96028 -20.60341 -19.69179 -19.05846 -18.47704 -17.76839 -17.21958 -17.01804 -16.47999 -16.29319 -15.89478 -15.47072 -15.26344 -15.12707 -14.99206 -14.70828 -14.58934 -14.40432 -13.85254 -13.51138 -13.45250 -13.21023 -13.17841 -12.92091 -12.88736 -12.81165 -12.75388 -12.55358 -12.48386 -12.30512 -12.00103 -11.89927 -11.75041 -11.71741 -11.45780 -11.29362 -11.25857 -10.98316 -10.18484 -10.01890 -9.57444 -9.17462 -6.87241 -0.37226 0.13858 0.59527 1.16086 1.20954 1.34538 1.43937 1.98804 2.09709 2.35200 2.87665 3.19774 3.45991 3.55409 3.79989 4.00384 4.05924 4.18698 4.34124 4.39597 4.41236 4.47444 4.62136 4.64633 4.72200 4.81618 4.91714 4.97544 5.02424 5.14733 5.18699 5.19668 5.23832 5.33274 5.41230 5.45625 5.54111 5.63009 5.84496 6.05652 6.18932 6.38203 6.47864 6.85074 7.86530 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.015919 B = 0.004679 C = 0.004430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1758.447900 B = 5983.245577 C = 6318.997927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.115 4.115 3 C 0.112 3.888 4 H 0.092 0.908 5 N -1.100 6.100 6 S 2.713 3.287 7 O -1.003 7.003 8 O -0.966 6.966 9 C -0.791 4.791 10 C 0.026 3.974 11 C -0.265 4.265 12 C 0.116 3.884 13 C -0.438 4.438 14 H 0.075 0.925 15 C 0.052 3.948 16 N -0.808 5.808 17 Si 0.958 3.042 18 H -0.253 1.253 19 H -0.274 1.274 20 H -0.237 1.237 21 C -0.221 4.221 22 C 0.089 3.911 23 Cl -0.053 7.053 24 C 0.104 3.896 25 H 0.114 0.886 26 C -0.183 4.183 27 O -0.564 6.564 28 H 0.050 0.950 29 H 0.038 0.962 30 H 0.058 0.942 31 H 0.081 0.919 32 H 0.086 0.914 33 H 0.424 0.576 34 H 0.136 0.864 35 H 0.113 0.887 36 H 0.305 0.695 37 H 0.120 0.880 38 H 0.054 0.946 39 H 0.067 0.933 40 H 0.064 0.936 41 H 0.382 0.618 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.683 -5.365 4.611 15.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.154 4.154 3 C 0.004 3.996 4 H 0.110 0.890 5 N -0.861 5.861 6 S 2.805 3.195 7 O -0.993 6.993 8 O -0.956 6.956 9 C -0.882 4.882 10 C 0.006 3.994 11 C -0.285 4.285 12 C 0.112 3.888 13 C -0.464 4.464 14 H 0.093 0.907 15 C -0.169 4.169 16 N -0.430 5.430 17 Si 0.780 3.220 18 H -0.179 1.179 19 H -0.200 1.200 20 H -0.160 1.160 21 C -0.242 4.242 22 C 0.061 3.939 23 Cl -0.024 7.024 24 C 0.044 3.956 25 H 0.132 0.868 26 C -0.241 4.241 27 O -0.371 6.371 28 H 0.069 0.931 29 H 0.057 0.943 30 H 0.077 0.923 31 H 0.100 0.900 32 H 0.105 0.895 33 H 0.261 0.739 34 H 0.154 0.846 35 H 0.131 0.869 36 H 0.116 0.884 37 H 0.138 0.862 38 H 0.073 0.927 39 H 0.086 0.914 40 H 0.083 0.917 41 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 14.017 -4.840 4.128 15.393 hybrid contribution -1.413 -0.256 0.347 1.477 sum 12.604 -5.096 4.475 14.313 Atomic orbital electron populations 1.21847 0.96576 1.01497 1.01636 1.21700 0.94772 0.94843 1.04073 1.21899 0.96138 0.95161 0.86370 0.89044 1.55362 1.73681 1.42399 1.14645 1.00940 0.73130 0.73208 0.72227 1.93483 1.84738 1.83343 1.37736 1.93615 1.68299 1.64001 1.69647 1.29623 1.20212 1.35334 1.03049 1.20398 0.90610 0.89597 0.98809 1.21214 0.98366 1.14750 0.94130 1.17847 0.91817 0.87080 0.92079 1.19831 0.97882 1.22080 1.06604 0.90683 1.26990 0.93156 0.98263 0.98499 1.69654 1.03106 1.32257 1.38016 0.85595 0.81415 0.77052 0.77938 1.17870 1.20001 1.16025 1.21062 0.91059 1.12912 0.99148 1.20132 0.87685 0.95498 0.90629 1.98356 1.35064 1.91533 1.77450 1.22209 0.90263 0.91126 0.92036 0.86804 1.22485 1.01661 0.96734 1.03194 1.86533 1.76708 1.55920 1.17931 0.93061 0.94328 0.92329 0.90047 0.89531 0.73931 0.84588 0.86935 0.88357 0.86228 0.92721 0.91393 0.91669 0.76908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.15 9.62 71.98 0.69 -3.46 16 2 C -0.11 -2.36 5.36 30.59 0.16 -2.19 16 3 C 0.11 2.46 2.16 44.99 0.10 2.56 16 4 H 0.09 2.35 4.55 -2.38 -0.01 2.34 16 5 N -1.10 -24.97 3.56 -169.39 -0.60 -25.58 16 6 S 2.71 86.14 5.31 -56.49 -0.30 85.84 16 7 O -1.00 -36.24 17.21 -128.00 -2.20 -38.44 16 8 O -0.97 -32.96 12.48 -128.00 -1.60 -34.55 16 9 C -0.79 -29.15 5.37 22.48 0.12 -29.03 16 10 C 0.03 0.98 9.22 22.21 0.20 1.19 16 11 C -0.26 -11.21 7.11 22.73 0.16 -11.05 16 12 C 0.12 5.25 5.15 -21.29 -0.11 5.14 16 13 C -0.44 -21.40 9.59 23.46 0.23 -21.18 16 14 H 0.08 3.93 8.06 -2.91 -0.02 3.91 16 15 C 0.05 2.42 5.44 85.26 0.46 2.88 16 16 N -0.81 -38.57 13.93 21.83 0.30 -38.27 16 17 Si 0.96 36.70 24.43 68.60 1.68 38.38 16 18 H -0.25 -9.25 6.63 99.48 0.66 -8.59 16 19 H -0.27 -9.87 7.11 99.48 0.71 -9.16 16 20 H -0.24 -9.07 6.79 99.48 0.68 -8.40 16 21 C -0.22 -9.29 9.57 22.75 0.22 -9.07 16 22 C 0.09 3.39 6.05 22.27 0.13 3.53 16 23 Cl -0.05 -1.78 22.95 -2.72 -0.06 -1.84 16 24 C 0.10 2.02 3.50 30.60 0.11 2.13 16 25 H 0.11 2.02 8.14 -2.39 -0.02 2.00 16 26 C -0.18 -3.93 8.26 71.98 0.59 -3.33 16 27 O -0.56 -10.10 12.53 -148.98 -1.87 -11.96 16 28 H 0.05 1.40 7.08 -2.38 -0.02 1.38 16 29 H 0.04 1.17 8.14 -2.38 -0.02 1.15 16 30 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.09 1.52 7.68 -2.39 -0.02 1.51 16 33 H 0.42 7.08 8.34 -96.74 -0.81 6.27 16 34 H 0.14 4.63 7.55 -2.91 -0.02 4.61 16 35 H 0.11 4.65 4.37 -2.91 -0.01 4.64 16 36 H 0.31 12.91 8.30 -92.71 -0.77 12.14 16 37 H 0.12 4.85 8.06 -2.91 -0.02 4.82 16 38 H 0.05 1.20 6.87 -2.39 -0.02 1.18 16 39 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.06 1.60 7.63 -2.39 -0.02 1.58 16 41 H 0.38 4.78 8.20 -74.06 -0.61 4.17 16 Total: -1.00 -56.60 346.74 -1.98 -58.58 By element: Atomic # 1 Polarization: 30.13 SS G_CDS: -0.40 Total: 29.73 kcal Atomic # 6 Polarization: -64.96 SS G_CDS: 3.07 Total: -61.89 kcal Atomic # 7 Polarization: -63.54 SS G_CDS: -0.30 Total: -63.84 kcal Atomic # 8 Polarization: -79.29 SS G_CDS: -5.67 Total: -84.96 kcal Atomic # 14 Polarization: 36.70 SS G_CDS: 1.68 Total: 38.38 kcal Atomic # 16 Polarization: 86.14 SS G_CDS: -0.30 Total: 85.84 kcal Atomic # 17 Polarization: -1.78 SS G_CDS: -0.06 Total: -1.84 kcal Total: -56.60 -1.98 -58.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451915178.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.080 kcal (2) G-P(sol) polarization free energy of solvation -56.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds