Wall clock time and date at job start Wed Apr 1 2020 05:01:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.46987 * 2 1 4 4 H 1.08999 * 109.47790 * 304.76958 * 3 2 1 5 5 N 1.46501 * 109.47251 * 64.77713 * 3 2 1 6 6 S 1.65598 * 120.00128 * 232.77660 * 5 3 2 7 7 O 1.42098 * 106.40633 * 174.69249 * 6 5 3 8 8 O 1.42102 * 106.40147 * 307.61569 * 6 5 3 9 9 C 1.76207 * 107.21780 * 61.15075 * 6 5 3 10 10 C 1.38638 * 119.74941 * 92.17947 * 9 6 5 11 11 C 1.37609 * 120.25705 * 179.76370 * 10 9 6 12 12 C 1.40742 * 119.77016 * 0.51174 * 11 10 9 13 13 C 1.41400 * 120.23667 * 179.76468 * 12 11 10 14 14 H 1.08004 * 119.99842 * 150.44518 * 13 12 11 15 15 C 1.39943 * 119.99981 * 330.45290 * 13 12 11 16 16 N 1.30827 * 119.99796 * 344.31116 * 15 13 12 17 17 Si 1.86797 * 119.99736 * 164.32115 * 15 13 12 18 18 H 1.48498 * 109.47277 * 59.99729 * 17 15 13 19 19 H 1.48507 * 109.47027 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.47134 * 299.99224 * 17 15 13 21 21 C 1.40678 * 119.52652 * 359.74208 * 12 11 10 22 22 C 1.37753 * 119.73017 * 0.02562 * 21 12 11 23 23 Cl 1.73604 * 119.88832 * 179.97438 * 22 21 12 24 24 C 1.53005 * 109.47038 * 184.77600 * 3 2 1 25 25 H 1.09002 * 109.47056 * 185.00485 * 24 3 2 26 26 C 1.52993 * 109.47342 * 64.99932 * 24 3 2 27 27 O 1.42902 * 109.46958 * 304.99900 * 24 3 2 28 28 H 1.09008 * 109.46659 * 61.07502 * 1 2 3 29 29 H 1.09000 * 109.46984 * 181.07163 * 1 2 3 30 30 H 1.08990 * 109.47406 * 301.07672 * 1 2 3 31 31 H 1.09007 * 109.47103 * 240.00119 * 2 1 3 32 32 H 1.08989 * 109.46926 * 120.00295 * 2 1 3 33 33 H 0.96997 * 119.99869 * 52.77482 * 5 3 2 34 34 H 1.07994 * 119.87485 * 359.97438 * 10 9 6 35 35 H 1.07998 * 120.11536 * 180.22899 * 11 10 9 36 36 H 0.97004 * 119.99392 * 180.02562 * 16 15 13 37 37 H 1.07998 * 120.13117 * 180.02562 * 21 12 11 38 38 H 1.09004 * 109.47137 * 59.99948 * 26 24 3 39 39 H 1.09002 * 109.47577 * 179.97438 * 26 24 3 40 40 H 1.09002 * 109.47496 * 300.00284 * 26 24 3 41 41 H 0.96708 * 113.99638 * 59.99958 * 27 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6086 1.9804 -0.8441 5 7 1.6478 2.0991 1.2495 6 16 0.8410 3.5446 1.2075 7 8 0.4977 3.8518 2.5517 8 8 1.6111 4.4102 0.3847 9 6 -0.6773 3.2699 0.3565 10 6 -1.8171 2.9379 1.0727 11 6 -3.0094 2.7259 0.4192 12 6 -3.0672 2.8365 -0.9826 13 6 -4.2861 2.6158 -1.6646 14 1 -4.4847 3.1275 -2.5948 15 6 -5.2351 1.7346 -1.1342 16 7 -4.8916 0.8914 -0.1947 17 14 -6.9920 1.7621 -1.7679 18 1 -6.9984 1.4632 -3.2225 19 1 -7.7935 0.7390 -1.0493 20 1 -7.5810 3.1054 -1.5359 21 6 -1.9039 3.1686 -1.7005 22 6 -0.7220 3.3813 -1.0255 23 17 0.7162 3.7907 -1.9074 24 6 3.5653 1.4441 -0.1201 25 1 3.9356 2.4654 -0.0309 26 6 3.9705 0.8716 -1.4798 27 8 4.1259 0.6416 0.9209 28 1 -0.3633 0.4971 -0.8996 29 1 -0.3633 -1.0275 0.0192 30 1 -0.3634 0.5304 0.8801 31 1 1.8934 -0.5138 -0.8901 32 1 1.8933 -0.5138 0.8899 33 1 1.8607 1.6871 2.1014 34 1 -1.7698 2.8487 2.1479 35 1 -3.8966 2.4710 0.9797 36 1 -5.5493 0.2803 0.1726 37 1 -1.9373 3.2564 -2.7764 38 1 3.5428 1.4838 -2.2738 39 1 5.0571 0.8732 -1.5656 40 1 3.6001 -0.1497 -1.5690 41 1 3.8393 -0.2819 0.9032 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451915180.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:01:31 Heat of formation + Delta-G solvation = -128.137158 kcal Electronic energy + Delta-G solvation = -27717.251424 eV Core-core repulsion = 23749.209281 eV Total energy + Delta-G solvation = -3968.042143 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.079 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -38.77109 -37.91680 -36.51264 -35.70765 -35.07777 -34.91893 -34.04146 -31.46614 -30.68507 -30.45710 -29.42127 -26.04038 -25.64414 -22.85581 -21.71209 -21.51894 -20.39131 -18.97707 -17.84339 -17.27140 -17.06679 -16.33910 -15.72371 -15.52330 -15.22168 -14.80606 -14.51774 -14.44880 -13.95522 -13.62851 -13.42200 -12.84682 -12.68695 -12.64265 -12.43338 -12.29130 -12.02609 -11.82042 -11.79533 -11.56103 -11.51561 -11.40180 -11.35165 -11.18092 -10.99087 -10.84006 -10.69917 -10.57757 -10.35558 -10.24596 -10.12143 -10.05861 -9.62533 -9.40590 -8.92044 -8.13928 -7.74274 -7.27844 -4.97583 1.22301 2.00207 2.56480 2.80745 2.83285 2.84175 2.90399 3.57742 3.67848 4.09326 4.39980 4.48681 4.82086 4.85203 5.10629 5.13680 5.21813 5.25016 5.36462 5.49969 5.69995 5.80339 5.86648 5.89188 5.98725 6.20079 6.23280 6.28049 6.45225 6.49882 6.51960 6.61816 6.70696 6.77242 6.93305 7.08977 7.32492 7.41072 7.53906 7.64185 7.70478 8.10865 8.30940 8.37787 9.65009 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.015650 B = 0.004057 C = 0.003922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1788.676900 B = 6900.751325 C = 7138.027768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.137 4.137 3 C 0.116 3.884 4 H 0.107 0.893 5 N -1.110 6.110 6 S 2.689 3.311 7 O -0.985 6.985 8 O -0.966 6.966 9 C -0.781 4.781 10 C -0.004 4.004 11 C -0.174 4.174 12 C 0.149 3.851 13 C -0.431 4.431 14 H 0.090 0.910 15 C 0.073 3.927 16 N -0.764 5.764 17 Si 0.919 3.081 18 H -0.261 1.261 19 H -0.274 1.274 20 H -0.259 1.259 21 C -0.221 4.221 22 C 0.084 3.916 23 Cl -0.084 7.084 24 C 0.092 3.908 25 H 0.106 0.894 26 C -0.187 4.187 27 O -0.561 6.561 28 H 0.061 0.939 29 H 0.050 0.950 30 H 0.063 0.937 31 H 0.071 0.929 32 H 0.064 0.936 33 H 0.411 0.589 34 H 0.112 0.888 35 H 0.122 0.878 36 H 0.291 0.709 37 H 0.111 0.889 38 H 0.069 0.931 39 H 0.063 0.937 40 H 0.062 0.938 41 H 0.369 0.631 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.183 -4.855 -1.379 8.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.175 4.175 3 C 0.008 3.992 4 H 0.125 0.875 5 N -0.866 5.866 6 S 2.785 3.215 7 O -0.976 6.976 8 O -0.956 6.956 9 C -0.876 4.876 10 C -0.024 4.024 11 C -0.194 4.194 12 C 0.145 3.855 13 C -0.458 4.458 14 H 0.108 0.892 15 C -0.150 4.150 16 N -0.386 5.386 17 Si 0.742 3.258 18 H -0.185 1.185 19 H -0.198 1.198 20 H -0.183 1.183 21 C -0.242 4.242 22 C 0.056 3.944 23 Cl -0.055 7.055 24 C 0.031 3.969 25 H 0.124 0.876 26 C -0.245 4.245 27 O -0.366 6.366 28 H 0.080 0.920 29 H 0.069 0.931 30 H 0.082 0.918 31 H 0.089 0.911 32 H 0.083 0.917 33 H 0.244 0.756 34 H 0.130 0.870 35 H 0.140 0.860 36 H 0.103 0.897 37 H 0.129 0.871 38 H 0.088 0.912 39 H 0.083 0.917 40 H 0.081 0.919 41 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 7.800 -3.578 -0.951 8.634 hybrid contribution -1.511 -1.263 -0.546 2.044 sum 6.288 -4.841 -1.497 8.076 Atomic orbital electron populations 1.21727 0.93706 1.01482 1.03663 1.21936 0.98120 0.95685 1.01802 1.21699 0.94978 0.95073 0.87417 0.87540 1.55649 1.74298 1.43468 1.13150 1.01538 0.74053 0.72736 0.73171 1.93493 1.84933 1.82855 1.36321 1.93597 1.69971 1.62791 1.69283 1.29082 1.19218 1.36846 1.02488 1.20191 0.91552 0.93108 0.97538 1.21293 0.97068 1.06720 0.94312 1.17692 0.91121 0.84774 0.91910 1.19892 0.98743 1.20088 1.07116 0.89171 1.26100 1.01649 0.93474 0.93752 1.69777 1.36861 1.12328 1.19595 0.86159 0.79886 0.79617 0.80154 1.18492 1.19828 1.18272 1.21017 0.91157 1.13455 0.98536 1.20056 0.87109 0.97166 0.90087 1.98338 1.38658 1.91644 1.76828 1.22397 0.92148 0.95904 0.86456 0.87576 1.22544 1.02242 1.01876 0.97851 1.86580 1.72467 1.24565 1.53001 0.91968 0.93139 0.91833 0.91073 0.91695 0.75558 0.87037 0.86049 0.89725 0.87094 0.91193 0.91748 0.91875 0.78349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.24 9.60 37.16 0.36 -1.88 16 2 C -0.14 -1.64 4.90 -26.73 -0.13 -1.77 16 3 C 0.12 1.61 2.11 -67.93 -0.14 1.47 16 4 H 0.11 1.64 4.51 -51.93 -0.23 1.41 16 5 N -1.11 -16.97 4.76 -4.89 -0.02 -16.99 16 6 S 2.69 51.68 5.39 -107.50 -0.58 51.10 16 7 O -0.99 -21.16 17.21 -57.17 -0.98 -22.15 16 8 O -0.97 -20.03 14.69 -57.17 -0.84 -20.87 16 9 C -0.78 -16.20 5.25 -39.25 -0.21 -16.40 16 10 C 0.00 -0.08 9.15 -39.66 -0.36 -0.44 16 11 C -0.17 -3.98 8.66 -38.87 -0.34 -4.31 16 12 C 0.15 3.46 5.52 -106.83 -0.59 2.87 16 13 C -0.43 -9.79 9.04 -37.74 -0.34 -10.13 16 14 H 0.09 1.94 7.89 -52.48 -0.41 1.53 16 15 C 0.07 1.56 5.15 -17.34 -0.09 1.47 16 16 N -0.76 -16.84 11.18 55.55 0.62 -16.22 16 17 Si 0.92 16.05 29.59 -169.99 -5.03 11.02 16 18 H -0.26 -4.52 7.11 56.52 0.40 -4.12 16 19 H -0.27 -4.68 7.11 56.52 0.40 -4.27 16 20 H -0.26 -4.54 7.11 56.52 0.40 -4.14 16 21 C -0.22 -4.82 9.57 -38.84 -0.37 -5.19 16 22 C 0.08 1.75 6.04 -39.58 -0.24 1.51 16 23 Cl -0.08 -1.57 22.94 -51.86 -1.19 -2.76 16 24 C 0.09 1.15 3.58 -26.73 -0.10 1.05 16 25 H 0.11 1.50 8.14 -51.93 -0.42 1.08 16 26 C -0.19 -1.93 9.29 37.15 0.35 -1.58 16 27 O -0.56 -6.65 13.19 -35.23 -0.46 -7.11 16 28 H 0.06 1.07 8.14 -51.92 -0.42 0.64 16 29 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.06 1.04 6.98 -51.93 -0.36 0.68 16 31 H 0.07 0.73 6.35 -51.92 -0.33 0.40 16 32 H 0.06 0.66 6.98 -51.94 -0.36 0.29 16 33 H 0.41 5.54 8.96 -34.47 -0.31 5.23 16 34 H 0.11 2.25 7.55 -52.49 -0.40 1.85 16 35 H 0.12 2.83 6.47 -52.49 -0.34 2.49 16 36 H 0.29 5.82 8.30 -40.82 -0.34 5.48 16 37 H 0.11 2.28 8.06 -52.49 -0.42 1.86 16 38 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.06 0.55 6.47 -51.93 -0.34 0.22 16 41 H 0.37 3.15 7.31 45.56 0.33 3.48 16 LS Contribution 354.65 15.07 5.34 5.34 Total: -1.00 -27.30 354.65 -9.77 -37.07 By element: Atomic # 1 Polarization: 19.32 SS G_CDS: -4.42 Total: 14.90 kcal Atomic # 6 Polarization: -31.13 SS G_CDS: -2.20 Total: -33.33 kcal Atomic # 7 Polarization: -33.81 SS G_CDS: 0.60 Total: -33.21 kcal Atomic # 8 Polarization: -47.84 SS G_CDS: -2.29 Total: -50.13 kcal Atomic # 14 Polarization: 16.05 SS G_CDS: -5.03 Total: 11.02 kcal Atomic # 16 Polarization: 51.68 SS G_CDS: -0.58 Total: 51.10 kcal Atomic # 17 Polarization: -1.57 SS G_CDS: -1.19 Total: -2.76 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -27.30 -9.77 -37.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451915180.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.070 kcal (2) G-P(sol) polarization free energy of solvation -27.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds