Wall clock time and date at job start Wed Apr 1 2020 05:01:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47095 * 2 1 4 4 H 1.08994 * 109.47349 * 53.78792 * 3 2 1 5 5 N 1.46507 * 109.46796 * 293.78450 * 3 2 1 6 6 S 1.65599 * 119.99529 * 145.21679 * 5 3 2 7 7 O 1.42094 * 106.40573 * 47.83076 * 6 5 3 8 8 O 1.42099 * 106.39932 * 180.75420 * 6 5 3 9 9 C 1.76198 * 107.21726 * 294.28903 * 6 5 3 10 10 C 1.38635 * 119.75639 * 113.26633 * 9 6 5 11 11 C 1.37607 * 120.26065 * 179.76206 * 10 9 6 12 12 C 1.40738 * 119.77258 * 0.51435 * 11 10 9 13 13 C 1.41398 * 120.23535 * 179.76538 * 12 11 10 14 14 H 1.08006 * 119.99862 * 145.80398 * 13 12 11 15 15 C 1.39946 * 120.00400 * 325.80158 * 13 12 11 16 16 N 1.30821 * 120.00075 * 167.83133 * 15 13 12 17 17 Si 1.86798 * 119.99735 * 347.83854 * 15 13 12 18 18 H 1.48505 * 109.47442 * 86.88283 * 17 15 13 19 19 H 1.48496 * 109.47102 * 206.88733 * 17 15 13 20 20 H 1.48499 * 109.47351 * 326.88762 * 17 15 13 21 21 C 1.40678 * 119.52582 * 359.74343 * 12 11 10 22 22 C 1.37751 * 119.73065 * 359.97438 * 21 12 11 23 23 Cl 1.73603 * 119.88938 * 179.97438 * 22 21 12 24 24 C 1.53003 * 109.46797 * 173.78999 * 3 2 1 25 25 H 1.08997 * 109.46794 * 175.00090 * 24 3 2 26 26 C 1.53005 * 109.46918 * 294.99563 * 24 3 2 27 27 O 1.42892 * 109.47587 * 54.99829 * 24 3 2 28 28 H 1.09001 * 109.47094 * 176.04586 * 1 2 3 29 29 H 1.08997 * 109.47136 * 56.05121 * 1 2 3 30 30 H 1.08997 * 109.47251 * 296.04657 * 1 2 3 31 31 H 1.09000 * 109.47185 * 120.00039 * 2 1 3 32 32 H 1.08996 * 109.47109 * 239.99649 * 2 1 3 33 33 H 0.96995 * 120.00022 * 325.21770 * 5 3 2 34 34 H 1.08005 * 119.86883 * 0.02562 * 10 9 6 35 35 H 1.08003 * 120.10803 * 180.23568 * 11 10 9 36 36 H 0.97003 * 119.99769 * 180.02562 * 16 15 13 37 37 H 1.07996 * 120.13062 * 180.02562 * 21 12 11 38 38 H 1.08997 * 109.46957 * 60.00627 * 26 24 3 39 39 H 1.08997 * 109.46859 * 180.02562 * 26 24 3 40 40 H 1.09000 * 109.46992 * 300.00290 * 26 24 3 41 41 H 0.96703 * 113.99859 * 299.99775 * 27 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5887 1.9874 0.8291 5 7 1.6775 2.0885 -1.2640 6 16 1.2863 3.6975 -1.2890 7 8 2.2981 4.3681 -0.5504 8 8 0.9708 4.0127 -2.6382 9 6 -0.2065 3.8856 -0.3721 10 6 -0.1950 4.5840 0.8254 11 6 -1.3558 4.7414 1.5475 12 6 -2.5561 4.1810 1.0720 13 6 -3.7535 4.3324 1.8086 14 1 -4.6968 4.4299 1.2917 15 6 -3.7164 4.3561 3.2074 16 7 -4.7719 4.7306 3.8835 17 14 -2.1597 3.8532 4.1090 18 1 -1.2652 5.0306 4.2471 19 1 -2.5124 3.3388 5.4566 20 1 -1.4636 2.7904 3.3401 21 6 -2.5560 3.4694 -0.1415 22 6 -1.3837 3.3291 -0.8511 23 17 -1.3788 2.4513 -2.3489 24 6 3.5620 1.4452 0.1560 25 1 3.9345 2.4657 0.0672 26 6 3.9348 0.8841 1.5298 27 8 4.1470 0.6341 -0.8645 28 1 -0.3633 -1.0252 -0.0709 29 1 -0.3633 0.5739 -0.8525 30 1 -0.3633 0.4512 0.9233 31 1 1.8933 -0.5138 0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.6667 1.5739 -2.0861 34 1 0.7277 5.0099 1.1909 35 1 -1.3448 5.2892 2.4782 36 1 -4.7461 4.7474 4.8530 37 1 -3.4715 3.0358 -0.5157 38 1 3.5624 -0.1364 1.6187 39 1 5.0191 0.8865 1.6411 40 1 3.4886 1.5030 2.3083 41 1 3.8600 -0.2892 -0.8459 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451915181.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:01:33 Heat of formation + Delta-G solvation = -132.017752 kcal Electronic energy + Delta-G solvation = -27663.074944 eV Core-core repulsion = 23694.864526 eV Total energy + Delta-G solvation = -3968.210418 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.079 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -38.87328 -38.20378 -36.64561 -35.92276 -35.24908 -35.05402 -34.06390 -31.67034 -31.04382 -30.76781 -29.91890 -26.00382 -25.79782 -23.03933 -22.10049 -21.47149 -20.53975 -19.18000 -17.99742 -17.60477 -17.07923 -16.61751 -15.93559 -15.62749 -15.28919 -14.86126 -14.67346 -14.62198 -14.11112 -14.01550 -13.40098 -13.15553 -13.01939 -12.84178 -12.79621 -12.42638 -12.12888 -11.97389 -11.92396 -11.63446 -11.53619 -11.48232 -11.34659 -11.19988 -11.08930 -11.02797 -10.89665 -10.82995 -10.62268 -10.45055 -10.33591 -10.14795 -9.82856 -9.53992 -9.02972 -8.35741 -8.00865 -7.44334 -5.10280 1.05143 1.73224 2.22105 2.66488 2.81142 2.91763 2.97890 3.48799 3.59759 3.93331 4.27398 4.35088 4.68348 4.71656 4.84301 4.95697 5.07294 5.10095 5.21923 5.33770 5.54454 5.63999 5.64963 5.71254 5.85686 5.95417 6.01677 6.05397 6.15438 6.21890 6.26919 6.33425 6.44916 6.57315 6.77790 6.88127 6.96005 7.26802 7.36343 7.50795 7.58439 7.81424 8.07103 8.22153 9.54276 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.012286 B = 0.004973 C = 0.004345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2278.534866 B = 5629.550203 C = 6443.221308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.132 4.132 3 C 0.127 3.873 4 H 0.094 0.906 5 N -1.107 6.107 6 S 2.697 3.303 7 O -0.982 6.982 8 O -0.966 6.966 9 C -0.794 4.794 10 C 0.021 3.979 11 C -0.253 4.253 12 C 0.122 3.878 13 C -0.408 4.408 14 H 0.103 0.897 15 C 0.079 3.921 16 N -0.777 5.777 17 Si 0.917 3.083 18 H -0.259 1.259 19 H -0.284 1.284 20 H -0.242 1.242 21 C -0.204 4.204 22 C 0.095 3.905 23 Cl -0.091 7.091 24 C 0.084 3.916 25 H 0.113 0.887 26 C -0.187 4.187 27 O -0.557 6.557 28 H 0.052 0.948 29 H 0.069 0.931 30 H 0.058 0.942 31 H 0.075 0.925 32 H 0.069 0.931 33 H 0.414 0.586 34 H 0.122 0.878 35 H 0.116 0.884 36 H 0.296 0.704 37 H 0.119 0.881 38 H 0.061 0.939 39 H 0.065 0.935 40 H 0.070 0.930 41 H 0.368 0.632 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.649 -9.542 -1.335 13.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.171 4.171 3 C 0.018 3.982 4 H 0.112 0.888 5 N -0.863 5.863 6 S 2.791 3.209 7 O -0.972 6.972 8 O -0.956 6.956 9 C -0.887 4.887 10 C 0.001 3.999 11 C -0.273 4.273 12 C 0.118 3.882 13 C -0.434 4.434 14 H 0.121 0.879 15 C -0.145 4.145 16 N -0.398 5.398 17 Si 0.742 3.258 18 H -0.185 1.185 19 H -0.211 1.211 20 H -0.165 1.165 21 C -0.225 4.225 22 C 0.067 3.933 23 Cl -0.062 7.062 24 C 0.023 3.977 25 H 0.131 0.869 26 C -0.245 4.245 27 O -0.362 6.362 28 H 0.071 0.929 29 H 0.088 0.912 30 H 0.077 0.923 31 H 0.093 0.907 32 H 0.087 0.913 33 H 0.248 0.752 34 H 0.140 0.860 35 H 0.133 0.867 36 H 0.107 0.893 37 H 0.137 0.863 38 H 0.080 0.920 39 H 0.084 0.916 40 H 0.089 0.911 41 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 10.214 -8.230 -1.654 13.221 hybrid contribution -0.638 -1.109 0.741 1.479 sum 9.576 -9.339 -0.913 13.407 Atomic orbital electron populations 1.21849 0.94456 1.01728 1.03645 1.21845 0.97668 0.95239 1.02319 1.21445 0.95005 0.95300 0.86404 0.88777 1.55584 1.85149 1.30644 1.14957 1.01341 0.74000 0.71970 0.73545 1.93483 1.57180 1.72428 1.74105 1.93564 1.85404 1.82009 1.34662 1.29282 1.16201 1.27178 1.16055 1.20271 0.97800 0.91328 0.90539 1.21285 0.93923 1.08783 1.03280 1.17790 0.92638 0.86823 0.90998 1.19843 0.95147 1.37163 0.91272 0.87942 1.26359 0.98639 0.91382 0.98110 1.69621 1.30488 1.29275 1.10442 0.86231 0.80476 0.81232 0.77823 1.18495 1.21132 1.16533 1.21021 0.95914 1.06643 0.98908 1.19995 0.94716 0.93220 0.85337 1.98339 1.98682 1.75225 1.33945 1.22572 0.91945 0.96382 0.86783 0.86917 1.22550 1.02543 1.01750 0.97690 1.86609 1.70969 1.24081 1.54580 0.92881 0.91247 0.92277 0.90677 0.91270 0.75233 0.85992 0.86655 0.89348 0.86333 0.91974 0.91630 0.91141 0.78538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.91 9.85 37.16 0.37 -1.54 16 2 C -0.13 -1.29 4.79 -26.73 -0.13 -1.42 16 3 C 0.13 1.55 2.02 -67.93 -0.14 1.42 16 4 H 0.09 1.25 7.89 -51.93 -0.41 0.84 16 5 N -1.11 -15.60 4.74 -4.89 -0.02 -15.62 16 6 S 2.70 49.12 4.99 -107.50 -0.54 48.59 16 7 O -0.98 -19.29 16.12 -57.17 -0.92 -20.21 16 8 O -0.97 -19.78 16.35 -57.17 -0.93 -20.72 16 9 C -0.79 -15.77 5.82 -39.25 -0.23 -16.00 16 10 C 0.02 0.42 9.52 -39.67 -0.38 0.04 16 11 C -0.25 -5.47 7.20 -38.87 -0.28 -5.75 16 12 C 0.12 2.75 5.05 -106.83 -0.54 2.21 16 13 C -0.41 -9.64 9.59 -37.74 -0.36 -10.00 16 14 H 0.10 2.52 8.06 -52.48 -0.42 2.10 16 15 C 0.08 1.79 5.46 -17.34 -0.09 1.70 16 16 N -0.78 -18.07 13.93 55.55 0.77 -17.30 16 17 Si 0.92 18.07 24.54 -169.99 -4.17 13.90 16 18 H -0.26 -4.96 6.41 56.52 0.36 -4.60 16 19 H -0.28 -5.38 7.11 56.52 0.40 -4.97 16 20 H -0.24 -4.81 7.03 56.52 0.40 -4.41 16 21 C -0.20 -4.32 9.57 -38.84 -0.37 -4.70 16 22 C 0.10 1.91 6.29 -39.57 -0.25 1.66 16 23 Cl -0.09 -1.60 24.94 -51.86 -1.29 -2.90 16 24 C 0.08 0.98 3.58 -26.73 -0.10 0.88 16 25 H 0.11 1.57 7.57 -51.93 -0.39 1.18 16 26 C -0.19 -1.74 9.30 37.16 0.35 -1.39 16 27 O -0.56 -6.24 13.19 -35.23 -0.46 -6.70 16 28 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.07 0.92 6.12 -51.93 -0.32 0.60 16 30 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.07 0.60 6.30 -51.93 -0.33 0.28 16 32 H 0.07 0.56 7.07 -51.93 -0.37 0.19 16 33 H 0.41 5.16 8.83 -34.47 -0.30 4.86 16 34 H 0.12 2.26 7.31 -52.48 -0.38 1.87 16 35 H 0.12 2.42 4.65 -52.48 -0.24 2.18 16 36 H 0.30 6.15 8.30 -40.82 -0.34 5.81 16 37 H 0.12 2.37 8.06 -52.49 -0.42 1.95 16 38 H 0.06 0.47 6.44 -51.93 -0.33 0.13 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.37 2.77 7.34 45.56 0.33 3.11 16 LS Contribution 353.87 15.07 5.33 5.33 Total: -1.00 -27.64 353.87 -8.85 -36.49 By element: Atomic # 1 Polarization: 16.47 SS G_CDS: -4.46 Total: 12.01 kcal Atomic # 6 Polarization: -30.72 SS G_CDS: -2.15 Total: -32.87 kcal Atomic # 7 Polarization: -33.67 SS G_CDS: 0.75 Total: -32.92 kcal Atomic # 8 Polarization: -45.31 SS G_CDS: -2.32 Total: -47.63 kcal Atomic # 14 Polarization: 18.07 SS G_CDS: -4.17 Total: 13.90 kcal Atomic # 16 Polarization: 49.12 SS G_CDS: -0.54 Total: 48.59 kcal Atomic # 17 Polarization: -1.60 SS G_CDS: -1.29 Total: -2.90 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -27.64 -8.85 -36.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451915181.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.530 kcal (2) G-P(sol) polarization free energy of solvation -27.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds