Wall clock time and date at job start Wed Apr 1 2020 05:01:33
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 C 1.53000 * 109.47095 * 2 1
4 4 H 1.08994 * 109.47349 * 53.78792 * 3 2 1
5 5 N 1.46507 * 109.46796 * 293.78450 * 3 2 1
6 6 S 1.65599 * 119.99529 * 145.21679 * 5 3 2
7 7 O 1.42094 * 106.40573 * 47.83076 * 6 5 3
8 8 O 1.42099 * 106.39932 * 180.75420 * 6 5 3
9 9 C 1.76198 * 107.21726 * 294.28903 * 6 5 3
10 10 C 1.38635 * 119.75639 * 113.26633 * 9 6 5
11 11 C 1.37607 * 120.26065 * 179.76206 * 10 9 6
12 12 C 1.40738 * 119.77258 * 0.51435 * 11 10 9
13 13 C 1.41398 * 120.23535 * 179.76538 * 12 11 10
14 14 H 1.08006 * 119.99862 * 145.80398 * 13 12 11
15 15 C 1.39946 * 120.00400 * 325.80158 * 13 12 11
16 16 N 1.30821 * 120.00075 * 167.83133 * 15 13 12
17 17 Si 1.86798 * 119.99735 * 347.83854 * 15 13 12
18 18 H 1.48505 * 109.47442 * 86.88283 * 17 15 13
19 19 H 1.48496 * 109.47102 * 206.88733 * 17 15 13
20 20 H 1.48499 * 109.47351 * 326.88762 * 17 15 13
21 21 C 1.40678 * 119.52582 * 359.74343 * 12 11 10
22 22 C 1.37751 * 119.73065 * 359.97438 * 21 12 11
23 23 Cl 1.73603 * 119.88938 * 179.97438 * 22 21 12
24 24 C 1.53003 * 109.46797 * 173.78999 * 3 2 1
25 25 H 1.08997 * 109.46794 * 175.00090 * 24 3 2
26 26 C 1.53005 * 109.46918 * 294.99563 * 24 3 2
27 27 O 1.42892 * 109.47587 * 54.99829 * 24 3 2
28 28 H 1.09001 * 109.47094 * 176.04586 * 1 2 3
29 29 H 1.08997 * 109.47136 * 56.05121 * 1 2 3
30 30 H 1.08997 * 109.47251 * 296.04657 * 1 2 3
31 31 H 1.09000 * 109.47185 * 120.00039 * 2 1 3
32 32 H 1.08996 * 109.47109 * 239.99649 * 2 1 3
33 33 H 0.96995 * 120.00022 * 325.21770 * 5 3 2
34 34 H 1.08005 * 119.86883 * 0.02562 * 10 9 6
35 35 H 1.08003 * 120.10803 * 180.23568 * 11 10 9
36 36 H 0.97003 * 119.99769 * 180.02562 * 16 15 13
37 37 H 1.07996 * 120.13062 * 180.02562 * 21 12 11
38 38 H 1.08997 * 109.46957 * 60.00627 * 26 24 3
39 39 H 1.08997 * 109.46859 * 180.02562 * 26 24 3
40 40 H 1.09000 * 109.46992 * 300.00290 * 26 24 3
41 41 H 0.96703 * 113.99859 * 299.99775 * 27 24 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 1 1.5887 1.9874 0.8291
5 7 1.6775 2.0885 -1.2640
6 16 1.2863 3.6975 -1.2890
7 8 2.2981 4.3681 -0.5504
8 8 0.9708 4.0127 -2.6382
9 6 -0.2065 3.8856 -0.3721
10 6 -0.1950 4.5840 0.8254
11 6 -1.3558 4.7414 1.5475
12 6 -2.5561 4.1810 1.0720
13 6 -3.7535 4.3324 1.8086
14 1 -4.6968 4.4299 1.2917
15 6 -3.7164 4.3561 3.2074
16 7 -4.7719 4.7306 3.8835
17 14 -2.1597 3.8532 4.1090
18 1 -1.2652 5.0306 4.2471
19 1 -2.5124 3.3388 5.4566
20 1 -1.4636 2.7904 3.3401
21 6 -2.5560 3.4694 -0.1415
22 6 -1.3837 3.3291 -0.8511
23 17 -1.3788 2.4513 -2.3489
24 6 3.5620 1.4452 0.1560
25 1 3.9345 2.4657 0.0672
26 6 3.9348 0.8841 1.5298
27 8 4.1470 0.6341 -0.8645
28 1 -0.3633 -1.0252 -0.0709
29 1 -0.3633 0.5739 -0.8525
30 1 -0.3633 0.4512 0.9233
31 1 1.8933 -0.5138 0.8900
32 1 1.8933 -0.5139 -0.8899
33 1 1.6667 1.5739 -2.0861
34 1 0.7277 5.0099 1.1909
35 1 -1.3448 5.2892 2.4782
36 1 -4.7461 4.7474 4.8530
37 1 -3.4715 3.0358 -0.5157
38 1 3.5624 -0.1364 1.6187
39 1 5.0191 0.8865 1.6411
40 1 3.4886 1.5030 2.3083
41 1 3.8600 -0.2892 -0.8459
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000451915181.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:01:33
Heat of formation + Delta-G solvation = -132.017752 kcal
Electronic energy + Delta-G solvation = -27663.074944 eV
Core-core repulsion = 23694.864526 eV
Total energy + Delta-G solvation = -3968.210418 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 347.079 amu
Computer time = 0.70 seconds
Orbital eigenvalues (eV)
-38.87328 -38.20378 -36.64561 -35.92276 -35.24908 -35.05402 -34.06390 -31.67034
-31.04382 -30.76781 -29.91890 -26.00382 -25.79782 -23.03933 -22.10049 -21.47149
-20.53975 -19.18000 -17.99742 -17.60477 -17.07923 -16.61751 -15.93559 -15.62749
-15.28919 -14.86126 -14.67346 -14.62198 -14.11112 -14.01550 -13.40098 -13.15553
-13.01939 -12.84178 -12.79621 -12.42638 -12.12888 -11.97389 -11.92396 -11.63446
-11.53619 -11.48232 -11.34659 -11.19988 -11.08930 -11.02797 -10.89665 -10.82995
-10.62268 -10.45055 -10.33591 -10.14795 -9.82856 -9.53992 -9.02972 -8.35741
-8.00865 -7.44334 -5.10280 1.05143 1.73224 2.22105 2.66488 2.81142
2.91763 2.97890 3.48799 3.59759 3.93331 4.27398 4.35088 4.68348
4.71656 4.84301 4.95697 5.07294 5.10095 5.21923 5.33770 5.54454
5.63999 5.64963 5.71254 5.85686 5.95417 6.01677 6.05397 6.15438
6.21890 6.26919 6.33425 6.44916 6.57315 6.77790 6.88127 6.96005
7.26802 7.36343 7.50795 7.58439 7.81424 8.07103 8.22153 9.54276
Molecular weight = 347.08amu
Principal moments of inertia in cm(-1)
A = 0.012286 B = 0.004973 C = 0.004345
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2278.534866 B = 5629.550203 C = 6443.221308
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.159 4.159
2 C -0.132 4.132
3 C 0.127 3.873
4 H 0.094 0.906
5 N -1.107 6.107
6 S 2.697 3.303
7 O -0.982 6.982
8 O -0.966 6.966
9 C -0.794 4.794
10 C 0.021 3.979
11 C -0.253 4.253
12 C 0.122 3.878
13 C -0.408 4.408
14 H 0.103 0.897
15 C 0.079 3.921
16 N -0.777 5.777
17 Si 0.917 3.083
18 H -0.259 1.259
19 H -0.284 1.284
20 H -0.242 1.242
21 C -0.204 4.204
22 C 0.095 3.905
23 Cl -0.091 7.091
24 C 0.084 3.916
25 H 0.113 0.887
26 C -0.187 4.187
27 O -0.557 6.557
28 H 0.052 0.948
29 H 0.069 0.931
30 H 0.058 0.942
31 H 0.075 0.925
32 H 0.069 0.931
33 H 0.414 0.586
34 H 0.122 0.878
35 H 0.116 0.884
36 H 0.296 0.704
37 H 0.119 0.881
38 H 0.061 0.939
39 H 0.065 0.935
40 H 0.070 0.930
41 H 0.368 0.632
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 9.649 -9.542 -1.335 13.635
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.217 4.217
2 C -0.171 4.171
3 C 0.018 3.982
4 H 0.112 0.888
5 N -0.863 5.863
6 S 2.791 3.209
7 O -0.972 6.972
8 O -0.956 6.956
9 C -0.887 4.887
10 C 0.001 3.999
11 C -0.273 4.273
12 C 0.118 3.882
13 C -0.434 4.434
14 H 0.121 0.879
15 C -0.145 4.145
16 N -0.398 5.398
17 Si 0.742 3.258
18 H -0.185 1.185
19 H -0.211 1.211
20 H -0.165 1.165
21 C -0.225 4.225
22 C 0.067 3.933
23 Cl -0.062 7.062
24 C 0.023 3.977
25 H 0.131 0.869
26 C -0.245 4.245
27 O -0.362 6.362
28 H 0.071 0.929
29 H 0.088 0.912
30 H 0.077 0.923
31 H 0.093 0.907
32 H 0.087 0.913
33 H 0.248 0.752
34 H 0.140 0.860
35 H 0.133 0.867
36 H 0.107 0.893
37 H 0.137 0.863
38 H 0.080 0.920
39 H 0.084 0.916
40 H 0.089 0.911
41 H 0.215 0.785
Dipole moment (debyes) X Y Z Total
from point charges 10.214 -8.230 -1.654 13.221
hybrid contribution -0.638 -1.109 0.741 1.479
sum 9.576 -9.339 -0.913 13.407
Atomic orbital electron populations
1.21849 0.94456 1.01728 1.03645 1.21845 0.97668 0.95239 1.02319
1.21445 0.95005 0.95300 0.86404 0.88777 1.55584 1.85149 1.30644
1.14957 1.01341 0.74000 0.71970 0.73545 1.93483 1.57180 1.72428
1.74105 1.93564 1.85404 1.82009 1.34662 1.29282 1.16201 1.27178
1.16055 1.20271 0.97800 0.91328 0.90539 1.21285 0.93923 1.08783
1.03280 1.17790 0.92638 0.86823 0.90998 1.19843 0.95147 1.37163
0.91272 0.87942 1.26359 0.98639 0.91382 0.98110 1.69621 1.30488
1.29275 1.10442 0.86231 0.80476 0.81232 0.77823 1.18495 1.21132
1.16533 1.21021 0.95914 1.06643 0.98908 1.19995 0.94716 0.93220
0.85337 1.98339 1.98682 1.75225 1.33945 1.22572 0.91945 0.96382
0.86783 0.86917 1.22550 1.02543 1.01750 0.97690 1.86609 1.70969
1.24081 1.54580 0.92881 0.91247 0.92277 0.90677 0.91270 0.75233
0.85992 0.86655 0.89348 0.86333 0.91974 0.91630 0.91141 0.78538
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -1.91 9.85 37.16 0.37 -1.54 16
2 C -0.13 -1.29 4.79 -26.73 -0.13 -1.42 16
3 C 0.13 1.55 2.02 -67.93 -0.14 1.42 16
4 H 0.09 1.25 7.89 -51.93 -0.41 0.84 16
5 N -1.11 -15.60 4.74 -4.89 -0.02 -15.62 16
6 S 2.70 49.12 4.99 -107.50 -0.54 48.59 16
7 O -0.98 -19.29 16.12 -57.17 -0.92 -20.21 16
8 O -0.97 -19.78 16.35 -57.17 -0.93 -20.72 16
9 C -0.79 -15.77 5.82 -39.25 -0.23 -16.00 16
10 C 0.02 0.42 9.52 -39.67 -0.38 0.04 16
11 C -0.25 -5.47 7.20 -38.87 -0.28 -5.75 16
12 C 0.12 2.75 5.05 -106.83 -0.54 2.21 16
13 C -0.41 -9.64 9.59 -37.74 -0.36 -10.00 16
14 H 0.10 2.52 8.06 -52.48 -0.42 2.10 16
15 C 0.08 1.79 5.46 -17.34 -0.09 1.70 16
16 N -0.78 -18.07 13.93 55.55 0.77 -17.30 16
17 Si 0.92 18.07 24.54 -169.99 -4.17 13.90 16
18 H -0.26 -4.96 6.41 56.52 0.36 -4.60 16
19 H -0.28 -5.38 7.11 56.52 0.40 -4.97 16
20 H -0.24 -4.81 7.03 56.52 0.40 -4.41 16
21 C -0.20 -4.32 9.57 -38.84 -0.37 -4.70 16
22 C 0.10 1.91 6.29 -39.57 -0.25 1.66 16
23 Cl -0.09 -1.60 24.94 -51.86 -1.29 -2.90 16
24 C 0.08 0.98 3.58 -26.73 -0.10 0.88 16
25 H 0.11 1.57 7.57 -51.93 -0.39 1.18 16
26 C -0.19 -1.74 9.30 37.16 0.35 -1.39 16
27 O -0.56 -6.24 13.19 -35.23 -0.46 -6.70 16
28 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16
29 H 0.07 0.92 6.12 -51.93 -0.32 0.60 16
30 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16
31 H 0.07 0.60 6.30 -51.93 -0.33 0.28 16
32 H 0.07 0.56 7.07 -51.93 -0.37 0.19 16
33 H 0.41 5.16 8.83 -34.47 -0.30 4.86 16
34 H 0.12 2.26 7.31 -52.48 -0.38 1.87 16
35 H 0.12 2.42 4.65 -52.48 -0.24 2.18 16
36 H 0.30 6.15 8.30 -40.82 -0.34 5.81 16
37 H 0.12 2.37 8.06 -52.49 -0.42 1.95 16
38 H 0.06 0.47 6.44 -51.93 -0.33 0.13 16
39 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16
40 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16
41 H 0.37 2.77 7.34 45.56 0.33 3.11 16
LS Contribution 353.87 15.07 5.33 5.33
Total: -1.00 -27.64 353.87 -8.85 -36.49
By element:
Atomic # 1 Polarization: 16.47 SS G_CDS: -4.46 Total: 12.01 kcal
Atomic # 6 Polarization: -30.72 SS G_CDS: -2.15 Total: -32.87 kcal
Atomic # 7 Polarization: -33.67 SS G_CDS: 0.75 Total: -32.92 kcal
Atomic # 8 Polarization: -45.31 SS G_CDS: -2.32 Total: -47.63 kcal
Atomic # 14 Polarization: 18.07 SS G_CDS: -4.17 Total: 13.90 kcal
Atomic # 16 Polarization: 49.12 SS G_CDS: -0.54 Total: 48.59 kcal
Atomic # 17 Polarization: -1.60 SS G_CDS: -1.29 Total: -2.90 kcal
Total LS contribution 5.33 Total: 5.33 kcal
Total: -27.64 -8.85 -36.49 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000451915181.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -95.530 kcal
(2) G-P(sol) polarization free energy of solvation -27.635 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.165 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.852 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.488 kcal
(6) G-S(sol) free energy of system = (1) + (5) -132.018 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.70 seconds