Wall clock time and date at job start Wed Apr 1 2020 05:01:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47095 * 2 1 4 4 H 1.08994 * 109.47349 * 53.78792 * 3 2 1 5 5 N 1.46507 * 109.46796 * 293.78450 * 3 2 1 6 6 S 1.65599 * 119.99529 * 145.21679 * 5 3 2 7 7 O 1.42094 * 106.40573 * 47.83076 * 6 5 3 8 8 O 1.42099 * 106.39932 * 180.75420 * 6 5 3 9 9 C 1.76198 * 107.21726 * 294.28903 * 6 5 3 10 10 C 1.38635 * 119.75639 * 113.26633 * 9 6 5 11 11 C 1.37607 * 120.26065 * 179.76206 * 10 9 6 12 12 C 1.40738 * 119.77258 * 0.51435 * 11 10 9 13 13 C 1.41398 * 120.23535 * 179.76538 * 12 11 10 14 14 H 1.08006 * 119.99862 * 145.80398 * 13 12 11 15 15 C 1.39946 * 120.00400 * 325.80158 * 13 12 11 16 16 N 1.30821 * 120.00075 * 167.83133 * 15 13 12 17 17 Si 1.86798 * 119.99735 * 347.83854 * 15 13 12 18 18 H 1.48505 * 109.47442 * 86.88283 * 17 15 13 19 19 H 1.48496 * 109.47102 * 206.88733 * 17 15 13 20 20 H 1.48499 * 109.47351 * 326.88762 * 17 15 13 21 21 C 1.40678 * 119.52582 * 359.74343 * 12 11 10 22 22 C 1.37751 * 119.73065 * 359.97438 * 21 12 11 23 23 Cl 1.73603 * 119.88938 * 179.97438 * 22 21 12 24 24 C 1.53003 * 109.46797 * 173.78999 * 3 2 1 25 25 H 1.08997 * 109.46794 * 175.00090 * 24 3 2 26 26 C 1.53005 * 109.46918 * 294.99563 * 24 3 2 27 27 O 1.42892 * 109.47587 * 54.99829 * 24 3 2 28 28 H 1.09001 * 109.47094 * 176.04586 * 1 2 3 29 29 H 1.08997 * 109.47136 * 56.05121 * 1 2 3 30 30 H 1.08997 * 109.47251 * 296.04657 * 1 2 3 31 31 H 1.09000 * 109.47185 * 120.00039 * 2 1 3 32 32 H 1.08996 * 109.47109 * 239.99649 * 2 1 3 33 33 H 0.96995 * 120.00022 * 325.21770 * 5 3 2 34 34 H 1.08005 * 119.86883 * 0.02562 * 10 9 6 35 35 H 1.08003 * 120.10803 * 180.23568 * 11 10 9 36 36 H 0.97003 * 119.99769 * 180.02562 * 16 15 13 37 37 H 1.07996 * 120.13062 * 180.02562 * 21 12 11 38 38 H 1.08997 * 109.46957 * 60.00627 * 26 24 3 39 39 H 1.08997 * 109.46859 * 180.02562 * 26 24 3 40 40 H 1.09000 * 109.46992 * 300.00290 * 26 24 3 41 41 H 0.96703 * 113.99859 * 299.99775 * 27 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5887 1.9874 0.8291 5 7 1.6775 2.0885 -1.2640 6 16 1.2863 3.6975 -1.2890 7 8 2.2981 4.3681 -0.5504 8 8 0.9708 4.0127 -2.6382 9 6 -0.2065 3.8856 -0.3721 10 6 -0.1950 4.5840 0.8254 11 6 -1.3558 4.7414 1.5475 12 6 -2.5561 4.1810 1.0720 13 6 -3.7535 4.3324 1.8086 14 1 -4.6968 4.4299 1.2917 15 6 -3.7164 4.3561 3.2074 16 7 -4.7719 4.7306 3.8835 17 14 -2.1597 3.8532 4.1090 18 1 -1.2652 5.0306 4.2471 19 1 -2.5124 3.3388 5.4566 20 1 -1.4636 2.7904 3.3401 21 6 -2.5560 3.4694 -0.1415 22 6 -1.3837 3.3291 -0.8511 23 17 -1.3788 2.4513 -2.3489 24 6 3.5620 1.4452 0.1560 25 1 3.9345 2.4657 0.0672 26 6 3.9348 0.8841 1.5298 27 8 4.1470 0.6341 -0.8645 28 1 -0.3633 -1.0252 -0.0709 29 1 -0.3633 0.5739 -0.8525 30 1 -0.3633 0.4512 0.9233 31 1 1.8933 -0.5138 0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.6667 1.5739 -2.0861 34 1 0.7277 5.0099 1.1909 35 1 -1.3448 5.2892 2.4782 36 1 -4.7461 4.7474 4.8530 37 1 -3.4715 3.0358 -0.5157 38 1 3.5624 -0.1364 1.6187 39 1 5.0191 0.8865 1.6411 40 1 3.4886 1.5030 2.3083 41 1 3.8600 -0.2892 -0.8459 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451915181.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:01:32 Heat of formation + Delta-G solvation = -152.482735 kcal Electronic energy + Delta-G solvation = -27663.962373 eV Core-core repulsion = 23694.864526 eV Total energy + Delta-G solvation = -3969.097846 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.079 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.92213 -39.74444 -38.19488 -37.47845 -36.81119 -36.01416 -35.74885 -32.74507 -32.69046 -31.62511 -31.53724 -27.70799 -26.73105 -23.88405 -23.76010 -23.14408 -21.47319 -20.60047 -19.71082 -19.06413 -18.33989 -17.81310 -17.39427 -16.94885 -16.33944 -16.25831 -16.17208 -15.64272 -15.47513 -15.13408 -14.99470 -14.75046 -14.63660 -14.37012 -13.77147 -13.53725 -13.26462 -13.13128 -13.06460 -12.99108 -12.98049 -12.85721 -12.72630 -12.71162 -12.61440 -12.26391 -12.12551 -12.09220 -11.83176 -11.77978 -11.61801 -11.38694 -11.25887 -11.13641 -10.12524 -10.04059 -9.64631 -9.13461 -6.88056 -0.42658 0.07113 0.53756 1.06794 1.22374 1.32846 1.43067 1.99181 2.08785 2.32287 2.81533 3.11963 3.48019 3.59094 3.76441 3.83314 4.02675 4.15596 4.24681 4.35421 4.39358 4.50334 4.58825 4.61130 4.70293 4.82986 4.88243 4.90248 4.97417 5.10905 5.13642 5.20029 5.22185 5.28505 5.36055 5.42566 5.51854 5.61694 5.81992 6.05153 6.18938 6.35064 6.47542 6.93693 7.91043 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.012286 B = 0.004973 C = 0.004345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2278.534866 B = 5629.550203 C = 6443.221308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.124 4.124 3 C 0.118 3.882 4 H 0.084 0.916 5 N -1.094 6.094 6 S 2.714 3.286 7 O -0.993 6.993 8 O -0.988 6.988 9 C -0.792 4.792 10 C 0.018 3.982 11 C -0.263 4.263 12 C 0.117 3.883 13 C -0.444 4.444 14 H 0.075 0.925 15 C 0.052 3.948 16 N -0.814 5.814 17 Si 0.957 3.043 18 H -0.248 1.248 19 H -0.270 1.270 20 H -0.246 1.246 21 C -0.217 4.217 22 C 0.094 3.906 23 Cl -0.066 7.066 24 C 0.089 3.911 25 H 0.086 0.914 26 C -0.184 4.184 27 O -0.568 6.568 28 H 0.068 0.932 29 H 0.052 0.948 30 H 0.038 0.962 31 H 0.101 0.899 32 H 0.093 0.907 33 H 0.424 0.576 34 H 0.142 0.858 35 H 0.121 0.879 36 H 0.305 0.695 37 H 0.122 0.878 38 H 0.085 0.915 39 H 0.068 0.932 40 H 0.068 0.932 41 H 0.385 0.615 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.160 -11.482 -1.427 16.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.163 4.163 3 C 0.011 3.989 4 H 0.102 0.898 5 N -0.854 5.854 6 S 2.806 3.194 7 O -0.983 6.983 8 O -0.978 6.978 9 C -0.883 4.883 10 C -0.002 4.002 11 C -0.283 4.283 12 C 0.112 3.888 13 C -0.471 4.471 14 H 0.093 0.907 15 C -0.168 4.168 16 N -0.437 5.437 17 Si 0.779 3.221 18 H -0.173 1.173 19 H -0.195 1.195 20 H -0.169 1.169 21 C -0.238 4.238 22 C 0.066 3.934 23 Cl -0.037 7.037 24 C 0.028 3.972 25 H 0.104 0.896 26 C -0.242 4.242 27 O -0.376 6.376 28 H 0.087 0.913 29 H 0.071 0.929 30 H 0.057 0.943 31 H 0.119 0.881 32 H 0.111 0.889 33 H 0.260 0.740 34 H 0.160 0.840 35 H 0.138 0.862 36 H 0.116 0.884 37 H 0.140 0.860 38 H 0.103 0.897 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 12.694 -10.174 -1.747 16.362 hybrid contribution -1.289 -0.593 0.546 1.520 sum 11.406 -10.767 -1.202 15.731 Atomic orbital electron populations 1.21874 0.96150 1.02255 1.01830 1.21854 0.95966 0.93694 1.04760 1.21724 0.95760 0.96613 0.84843 0.89836 1.55238 1.84462 1.29287 1.16449 1.00807 0.73162 0.72879 0.72519 1.93472 1.57008 1.73568 1.74289 1.93532 1.85552 1.83146 1.35610 1.29754 1.17296 1.25645 1.15606 1.20550 0.98171 0.90966 0.90477 1.21424 0.93980 1.08979 1.03881 1.17904 0.92690 0.86761 0.91396 1.19766 0.94557 1.40598 0.92154 0.90717 1.26931 1.00857 0.90884 0.98154 1.69633 1.31934 1.30896 1.11230 0.85627 0.77837 0.81194 0.77444 1.17310 1.19549 1.16880 1.21142 0.96698 1.06950 0.99031 1.20081 0.94298 0.92908 0.86086 1.98343 1.98640 1.74535 1.32207 1.22380 0.90960 0.95608 0.88284 0.89642 1.22527 1.02911 1.02879 0.95891 1.86582 1.71056 1.25436 1.54494 0.91273 0.92870 0.94261 0.88103 0.88900 0.73953 0.84029 0.86155 0.88413 0.85973 0.89656 0.91265 0.91313 0.76496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.50 9.85 71.98 0.71 -2.79 16 2 C -0.12 -1.96 4.79 30.59 0.15 -1.81 16 3 C 0.12 2.58 2.02 44.99 0.09 2.67 16 4 H 0.08 2.03 7.89 -2.39 -0.02 2.02 16 5 N -1.09 -28.36 4.74 -169.38 -0.80 -29.16 16 6 S 2.71 94.54 4.99 -56.49 -0.28 94.26 16 7 O -0.99 -37.47 16.12 -128.00 -2.06 -39.54 16 8 O -0.99 -38.92 16.35 -128.00 -2.09 -41.02 16 9 C -0.79 -30.56 5.82 22.48 0.13 -30.43 16 10 C 0.02 0.72 9.52 22.22 0.21 0.93 16 11 C -0.26 -11.28 7.20 22.73 0.16 -11.11 16 12 C 0.12 5.36 5.05 -21.29 -0.11 5.25 16 13 C -0.44 -21.90 9.59 23.46 0.22 -21.67 16 14 H 0.07 3.96 8.06 -2.91 -0.02 3.93 16 15 C 0.05 2.42 5.46 85.26 0.47 2.88 16 16 N -0.81 -39.03 13.93 21.83 0.30 -38.73 16 17 Si 0.96 36.62 24.54 68.60 1.68 38.30 16 18 H -0.25 -8.98 6.41 99.48 0.64 -8.34 16 19 H -0.27 -9.58 7.11 99.48 0.71 -8.87 16 20 H -0.25 -9.42 7.03 99.48 0.70 -8.72 16 21 C -0.22 -9.31 9.57 22.75 0.22 -9.09 16 22 C 0.09 3.72 6.29 22.27 0.14 3.86 16 23 Cl -0.07 -2.25 24.94 -2.72 -0.07 -2.32 16 24 C 0.09 1.83 3.58 30.60 0.11 1.94 16 25 H 0.09 2.25 7.57 -2.39 -0.02 2.23 16 26 C -0.18 -2.81 9.30 71.98 0.67 -2.14 16 27 O -0.57 -10.83 13.19 -148.98 -1.97 -12.79 16 28 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.05 1.29 6.12 -2.39 -0.01 1.28 16 30 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.10 1.14 6.30 -2.39 -0.02 1.12 16 32 H 0.09 1.06 7.07 -2.39 -0.02 1.05 16 33 H 0.42 9.42 8.83 -96.75 -0.85 8.56 16 34 H 0.14 4.99 7.31 -2.91 -0.02 4.97 16 35 H 0.12 4.98 4.65 -2.91 -0.01 4.97 16 36 H 0.30 12.94 8.30 -92.71 -0.77 12.17 16 37 H 0.12 5.01 8.06 -2.91 -0.02 4.99 16 38 H 0.08 0.90 6.44 -2.39 -0.02 0.88 16 39 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.39 4.13 7.34 -74.06 -0.54 3.59 16 Total: -1.00 -59.94 353.87 -2.50 -62.44 By element: Atomic # 1 Polarization: 30.47 SS G_CDS: -0.38 Total: 30.09 kcal Atomic # 6 Polarization: -64.71 SS G_CDS: 3.17 Total: -61.54 kcal Atomic # 7 Polarization: -67.39 SS G_CDS: -0.50 Total: -67.89 kcal Atomic # 8 Polarization: -87.23 SS G_CDS: -6.12 Total: -93.35 kcal Atomic # 14 Polarization: 36.62 SS G_CDS: 1.68 Total: 38.30 kcal Atomic # 16 Polarization: 94.54 SS G_CDS: -0.28 Total: 94.26 kcal Atomic # 17 Polarization: -2.25 SS G_CDS: -0.07 Total: -2.32 kcal Total: -59.94 -2.50 -62.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451915181.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.044 kcal (2) G-P(sol) polarization free energy of solvation -59.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds