Wall clock time and date at job start Wed Apr 1 2020 05:01:32
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 C 1.53000 * 109.47095 * 2 1
4 4 H 1.08994 * 109.47349 * 53.78792 * 3 2 1
5 5 N 1.46507 * 109.46796 * 293.78450 * 3 2 1
6 6 S 1.65599 * 119.99529 * 145.21679 * 5 3 2
7 7 O 1.42094 * 106.40573 * 47.83076 * 6 5 3
8 8 O 1.42099 * 106.39932 * 180.75420 * 6 5 3
9 9 C 1.76198 * 107.21726 * 294.28903 * 6 5 3
10 10 C 1.38635 * 119.75639 * 113.26633 * 9 6 5
11 11 C 1.37607 * 120.26065 * 179.76206 * 10 9 6
12 12 C 1.40738 * 119.77258 * 0.51435 * 11 10 9
13 13 C 1.41398 * 120.23535 * 179.76538 * 12 11 10
14 14 H 1.08006 * 119.99862 * 145.80398 * 13 12 11
15 15 C 1.39946 * 120.00400 * 325.80158 * 13 12 11
16 16 N 1.30821 * 120.00075 * 167.83133 * 15 13 12
17 17 Si 1.86798 * 119.99735 * 347.83854 * 15 13 12
18 18 H 1.48505 * 109.47442 * 86.88283 * 17 15 13
19 19 H 1.48496 * 109.47102 * 206.88733 * 17 15 13
20 20 H 1.48499 * 109.47351 * 326.88762 * 17 15 13
21 21 C 1.40678 * 119.52582 * 359.74343 * 12 11 10
22 22 C 1.37751 * 119.73065 * 359.97438 * 21 12 11
23 23 Cl 1.73603 * 119.88938 * 179.97438 * 22 21 12
24 24 C 1.53003 * 109.46797 * 173.78999 * 3 2 1
25 25 H 1.08997 * 109.46794 * 175.00090 * 24 3 2
26 26 C 1.53005 * 109.46918 * 294.99563 * 24 3 2
27 27 O 1.42892 * 109.47587 * 54.99829 * 24 3 2
28 28 H 1.09001 * 109.47094 * 176.04586 * 1 2 3
29 29 H 1.08997 * 109.47136 * 56.05121 * 1 2 3
30 30 H 1.08997 * 109.47251 * 296.04657 * 1 2 3
31 31 H 1.09000 * 109.47185 * 120.00039 * 2 1 3
32 32 H 1.08996 * 109.47109 * 239.99649 * 2 1 3
33 33 H 0.96995 * 120.00022 * 325.21770 * 5 3 2
34 34 H 1.08005 * 119.86883 * 0.02562 * 10 9 6
35 35 H 1.08003 * 120.10803 * 180.23568 * 11 10 9
36 36 H 0.97003 * 119.99769 * 180.02562 * 16 15 13
37 37 H 1.07996 * 120.13062 * 180.02562 * 21 12 11
38 38 H 1.08997 * 109.46957 * 60.00627 * 26 24 3
39 39 H 1.08997 * 109.46859 * 180.02562 * 26 24 3
40 40 H 1.09000 * 109.46992 * 300.00290 * 26 24 3
41 41 H 0.96703 * 113.99859 * 299.99775 * 27 24 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 1 1.5887 1.9874 0.8291
5 7 1.6775 2.0885 -1.2640
6 16 1.2863 3.6975 -1.2890
7 8 2.2981 4.3681 -0.5504
8 8 0.9708 4.0127 -2.6382
9 6 -0.2065 3.8856 -0.3721
10 6 -0.1950 4.5840 0.8254
11 6 -1.3558 4.7414 1.5475
12 6 -2.5561 4.1810 1.0720
13 6 -3.7535 4.3324 1.8086
14 1 -4.6968 4.4299 1.2917
15 6 -3.7164 4.3561 3.2074
16 7 -4.7719 4.7306 3.8835
17 14 -2.1597 3.8532 4.1090
18 1 -1.2652 5.0306 4.2471
19 1 -2.5124 3.3388 5.4566
20 1 -1.4636 2.7904 3.3401
21 6 -2.5560 3.4694 -0.1415
22 6 -1.3837 3.3291 -0.8511
23 17 -1.3788 2.4513 -2.3489
24 6 3.5620 1.4452 0.1560
25 1 3.9345 2.4657 0.0672
26 6 3.9348 0.8841 1.5298
27 8 4.1470 0.6341 -0.8645
28 1 -0.3633 -1.0252 -0.0709
29 1 -0.3633 0.5739 -0.8525
30 1 -0.3633 0.4512 0.9233
31 1 1.8933 -0.5138 0.8900
32 1 1.8933 -0.5139 -0.8899
33 1 1.6667 1.5739 -2.0861
34 1 0.7277 5.0099 1.1909
35 1 -1.3448 5.2892 2.4782
36 1 -4.7461 4.7474 4.8530
37 1 -3.4715 3.0358 -0.5157
38 1 3.5624 -0.1364 1.6187
39 1 5.0191 0.8865 1.6411
40 1 3.4886 1.5030 2.3083
41 1 3.8600 -0.2892 -0.8459
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000451915181.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:01:32
Heat of formation + Delta-G solvation = -152.482735 kcal
Electronic energy + Delta-G solvation = -27663.962373 eV
Core-core repulsion = 23694.864526 eV
Total energy + Delta-G solvation = -3969.097846 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 347.079 amu
Computer time = 0.73 seconds
Orbital eigenvalues (eV)
-39.92213 -39.74444 -38.19488 -37.47845 -36.81119 -36.01416 -35.74885 -32.74507
-32.69046 -31.62511 -31.53724 -27.70799 -26.73105 -23.88405 -23.76010 -23.14408
-21.47319 -20.60047 -19.71082 -19.06413 -18.33989 -17.81310 -17.39427 -16.94885
-16.33944 -16.25831 -16.17208 -15.64272 -15.47513 -15.13408 -14.99470 -14.75046
-14.63660 -14.37012 -13.77147 -13.53725 -13.26462 -13.13128 -13.06460 -12.99108
-12.98049 -12.85721 -12.72630 -12.71162 -12.61440 -12.26391 -12.12551 -12.09220
-11.83176 -11.77978 -11.61801 -11.38694 -11.25887 -11.13641 -10.12524 -10.04059
-9.64631 -9.13461 -6.88056 -0.42658 0.07113 0.53756 1.06794 1.22374
1.32846 1.43067 1.99181 2.08785 2.32287 2.81533 3.11963 3.48019
3.59094 3.76441 3.83314 4.02675 4.15596 4.24681 4.35421 4.39358
4.50334 4.58825 4.61130 4.70293 4.82986 4.88243 4.90248 4.97417
5.10905 5.13642 5.20029 5.22185 5.28505 5.36055 5.42566 5.51854
5.61694 5.81992 6.05153 6.18938 6.35064 6.47542 6.93693 7.91043
Molecular weight = 347.08amu
Principal moments of inertia in cm(-1)
A = 0.012286 B = 0.004973 C = 0.004345
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2278.534866 B = 5629.550203 C = 6443.221308
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.164 4.164
2 C -0.124 4.124
3 C 0.118 3.882
4 H 0.084 0.916
5 N -1.094 6.094
6 S 2.714 3.286
7 O -0.993 6.993
8 O -0.988 6.988
9 C -0.792 4.792
10 C 0.018 3.982
11 C -0.263 4.263
12 C 0.117 3.883
13 C -0.444 4.444
14 H 0.075 0.925
15 C 0.052 3.948
16 N -0.814 5.814
17 Si 0.957 3.043
18 H -0.248 1.248
19 H -0.270 1.270
20 H -0.246 1.246
21 C -0.217 4.217
22 C 0.094 3.906
23 Cl -0.066 7.066
24 C 0.089 3.911
25 H 0.086 0.914
26 C -0.184 4.184
27 O -0.568 6.568
28 H 0.068 0.932
29 H 0.052 0.948
30 H 0.038 0.962
31 H 0.101 0.899
32 H 0.093 0.907
33 H 0.424 0.576
34 H 0.142 0.858
35 H 0.121 0.879
36 H 0.305 0.695
37 H 0.122 0.878
38 H 0.085 0.915
39 H 0.068 0.932
40 H 0.068 0.932
41 H 0.385 0.615
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 12.160 -11.482 -1.427 16.785
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.221 4.221
2 C -0.163 4.163
3 C 0.011 3.989
4 H 0.102 0.898
5 N -0.854 5.854
6 S 2.806 3.194
7 O -0.983 6.983
8 O -0.978 6.978
9 C -0.883 4.883
10 C -0.002 4.002
11 C -0.283 4.283
12 C 0.112 3.888
13 C -0.471 4.471
14 H 0.093 0.907
15 C -0.168 4.168
16 N -0.437 5.437
17 Si 0.779 3.221
18 H -0.173 1.173
19 H -0.195 1.195
20 H -0.169 1.169
21 C -0.238 4.238
22 C 0.066 3.934
23 Cl -0.037 7.037
24 C 0.028 3.972
25 H 0.104 0.896
26 C -0.242 4.242
27 O -0.376 6.376
28 H 0.087 0.913
29 H 0.071 0.929
30 H 0.057 0.943
31 H 0.119 0.881
32 H 0.111 0.889
33 H 0.260 0.740
34 H 0.160 0.840
35 H 0.138 0.862
36 H 0.116 0.884
37 H 0.140 0.860
38 H 0.103 0.897
39 H 0.087 0.913
40 H 0.087 0.913
41 H 0.235 0.765
Dipole moment (debyes) X Y Z Total
from point charges 12.694 -10.174 -1.747 16.362
hybrid contribution -1.289 -0.593 0.546 1.520
sum 11.406 -10.767 -1.202 15.731
Atomic orbital electron populations
1.21874 0.96150 1.02255 1.01830 1.21854 0.95966 0.93694 1.04760
1.21724 0.95760 0.96613 0.84843 0.89836 1.55238 1.84462 1.29287
1.16449 1.00807 0.73162 0.72879 0.72519 1.93472 1.57008 1.73568
1.74289 1.93532 1.85552 1.83146 1.35610 1.29754 1.17296 1.25645
1.15606 1.20550 0.98171 0.90966 0.90477 1.21424 0.93980 1.08979
1.03881 1.17904 0.92690 0.86761 0.91396 1.19766 0.94557 1.40598
0.92154 0.90717 1.26931 1.00857 0.90884 0.98154 1.69633 1.31934
1.30896 1.11230 0.85627 0.77837 0.81194 0.77444 1.17310 1.19549
1.16880 1.21142 0.96698 1.06950 0.99031 1.20081 0.94298 0.92908
0.86086 1.98343 1.98640 1.74535 1.32207 1.22380 0.90960 0.95608
0.88284 0.89642 1.22527 1.02911 1.02879 0.95891 1.86582 1.71056
1.25436 1.54494 0.91273 0.92870 0.94261 0.88103 0.88900 0.73953
0.84029 0.86155 0.88413 0.85973 0.89656 0.91265 0.91313 0.76496
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -3.50 9.85 71.98 0.71 -2.79 16
2 C -0.12 -1.96 4.79 30.59 0.15 -1.81 16
3 C 0.12 2.58 2.02 44.99 0.09 2.67 16
4 H 0.08 2.03 7.89 -2.39 -0.02 2.02 16
5 N -1.09 -28.36 4.74 -169.38 -0.80 -29.16 16
6 S 2.71 94.54 4.99 -56.49 -0.28 94.26 16
7 O -0.99 -37.47 16.12 -128.00 -2.06 -39.54 16
8 O -0.99 -38.92 16.35 -128.00 -2.09 -41.02 16
9 C -0.79 -30.56 5.82 22.48 0.13 -30.43 16
10 C 0.02 0.72 9.52 22.22 0.21 0.93 16
11 C -0.26 -11.28 7.20 22.73 0.16 -11.11 16
12 C 0.12 5.36 5.05 -21.29 -0.11 5.25 16
13 C -0.44 -21.90 9.59 23.46 0.22 -21.67 16
14 H 0.07 3.96 8.06 -2.91 -0.02 3.93 16
15 C 0.05 2.42 5.46 85.26 0.47 2.88 16
16 N -0.81 -39.03 13.93 21.83 0.30 -38.73 16
17 Si 0.96 36.62 24.54 68.60 1.68 38.30 16
18 H -0.25 -8.98 6.41 99.48 0.64 -8.34 16
19 H -0.27 -9.58 7.11 99.48 0.71 -8.87 16
20 H -0.25 -9.42 7.03 99.48 0.70 -8.72 16
21 C -0.22 -9.31 9.57 22.75 0.22 -9.09 16
22 C 0.09 3.72 6.29 22.27 0.14 3.86 16
23 Cl -0.07 -2.25 24.94 -2.72 -0.07 -2.32 16
24 C 0.09 1.83 3.58 30.60 0.11 1.94 16
25 H 0.09 2.25 7.57 -2.39 -0.02 2.23 16
26 C -0.18 -2.81 9.30 71.98 0.67 -2.14 16
27 O -0.57 -10.83 13.19 -148.98 -1.97 -12.79 16
28 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16
29 H 0.05 1.29 6.12 -2.39 -0.01 1.28 16
30 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16
31 H 0.10 1.14 6.30 -2.39 -0.02 1.12 16
32 H 0.09 1.06 7.07 -2.39 -0.02 1.05 16
33 H 0.42 9.42 8.83 -96.75 -0.85 8.56 16
34 H 0.14 4.99 7.31 -2.91 -0.02 4.97 16
35 H 0.12 4.98 4.65 -2.91 -0.01 4.97 16
36 H 0.30 12.94 8.30 -92.71 -0.77 12.17 16
37 H 0.12 5.01 8.06 -2.91 -0.02 4.99 16
38 H 0.08 0.90 6.44 -2.39 -0.02 0.88 16
39 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16
40 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16
41 H 0.39 4.13 7.34 -74.06 -0.54 3.59 16
Total: -1.00 -59.94 353.87 -2.50 -62.44
By element:
Atomic # 1 Polarization: 30.47 SS G_CDS: -0.38 Total: 30.09 kcal
Atomic # 6 Polarization: -64.71 SS G_CDS: 3.17 Total: -61.54 kcal
Atomic # 7 Polarization: -67.39 SS G_CDS: -0.50 Total: -67.89 kcal
Atomic # 8 Polarization: -87.23 SS G_CDS: -6.12 Total: -93.35 kcal
Atomic # 14 Polarization: 36.62 SS G_CDS: 1.68 Total: 38.30 kcal
Atomic # 16 Polarization: 94.54 SS G_CDS: -0.28 Total: 94.26 kcal
Atomic # 17 Polarization: -2.25 SS G_CDS: -0.07 Total: -2.32 kcal
Total: -59.94 -2.50 -62.44 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000451915181.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -90.044 kcal
(2) G-P(sol) polarization free energy of solvation -59.942 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.986 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.496 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.439 kcal
(6) G-S(sol) free energy of system = (1) + (5) -152.483 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.73 seconds