Wall clock time and date at job start Wed Apr 1 2020 05:02:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50703 * 119.99791 * 2 1 4 4 N 1.46507 * 109.46918 * 125.00148 * 3 2 1 5 5 C 1.46502 * 119.99715 * 274.99920 * 4 3 2 6 6 C 1.50701 * 109.46930 * 275.00037 * 5 4 3 7 7 H 1.07994 * 120.00139 * 0.02562 * 6 5 4 8 8 C 1.37883 * 119.99889 * 179.97438 * 6 5 4 9 9 N 1.31508 * 120.00108 * 180.02562 * 8 6 5 10 10 Si 1.86798 * 119.99878 * 0.02562 * 8 6 5 11 11 H 1.48495 * 109.47411 * 89.99479 * 10 8 6 12 12 H 1.48500 * 109.46952 * 209.99689 * 10 8 6 13 13 H 1.48500 * 109.47365 * 329.99348 * 10 8 6 14 14 S 1.65591 * 120.00219 * 95.00215 * 4 3 2 15 15 O 1.42106 * 106.40082 * 336.45745 * 14 4 3 16 16 O 1.42102 * 106.40188 * 203.53787 * 14 4 3 17 17 C 1.76202 * 107.22128 * 89.99705 * 14 4 3 18 18 C 1.38163 * 120.02748 * 115.02353 * 17 14 4 19 19 C 1.38243 * 120.05438 * 179.97438 * 18 17 14 20 20 C 1.38289 * 120.11362 * 359.97438 * 19 18 17 21 21 C 1.38125 * 120.05159 * 0.02562 * 20 19 18 22 22 C 1.38708 * 120.02753 * 295.00213 * 17 14 4 23 23 O 1.35899 * 120.05461 * 359.97438 * 22 17 14 24 24 C 1.42903 * 116.99930 * 180.02562 * 23 22 17 25 25 F 1.39895 * 109.47392 * 300.00490 * 24 23 22 26 26 F 1.39899 * 109.46826 * 60.00682 * 24 23 22 27 27 H 1.07997 * 120.00121 * 359.97438 * 1 2 3 28 28 H 1.08003 * 119.99676 * 179.97438 * 1 2 3 29 29 H 1.08005 * 120.00279 * 180.02562 * 2 1 3 30 30 H 1.09000 * 109.47121 * 4.99995 * 3 2 1 31 31 H 1.09000 * 109.46936 * 244.99589 * 3 2 1 32 32 H 1.09003 * 109.47154 * 35.00149 * 5 4 3 33 33 H 1.08999 * 109.46882 * 154.99983 * 5 4 3 34 34 H 0.96993 * 120.00381 * 180.02562 * 9 8 6 35 35 H 1.08001 * 119.97024 * 359.97438 * 18 17 14 36 36 H 1.08004 * 119.94070 * 180.02562 * 19 18 17 37 37 H 1.07993 * 119.96940 * 180.28495 * 20 19 18 38 38 H 1.08000 * 120.02364 * 180.02562 * 21 20 19 39 39 H 1.08998 * 109.46876 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9938 1.3319 1.1315 5 6 2.5284 1.7621 2.4523 6 6 2.5990 3.2646 2.5450 7 1 2.9545 3.8414 1.7040 8 6 2.2087 3.9030 3.7031 9 7 2.2699 5.2142 3.7839 10 14 1.5931 2.9054 5.1575 11 1 2.7379 2.5496 6.0339 12 1 0.6105 3.7087 5.9283 13 1 0.9415 1.6646 4.6664 14 16 4.5712 0.8760 0.9174 15 8 4.5923 0.0263 -0.2215 16 8 5.0502 0.4765 2.1942 17 6 5.4768 2.3218 0.4763 18 6 6.4547 2.8097 1.3215 19 6 7.1659 3.9437 0.9757 20 6 6.9010 4.5921 -0.2166 21 6 5.9243 4.1081 -1.0650 22 6 5.2087 2.9706 -0.7200 23 8 4.2480 2.4920 -1.5535 24 6 4.0263 3.2109 -2.7685 25 9 3.6459 4.5238 -2.4709 26 9 5.2045 3.2263 -3.5227 27 1 -0.5400 0.9353 0.0004 28 1 -0.5400 -0.9354 -0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.3585 2.1317 0.0896 31 1 2.6213 1.4026 -0.9314 32 1 1.4982 1.4371 2.5982 33 1 3.1612 1.3204 3.2221 34 1 1.9957 5.6632 4.5987 35 1 6.6637 2.3049 2.2531 36 1 7.9303 4.3233 1.6376 37 1 7.4612 5.4750 -0.4866 38 1 5.7181 4.6146 -1.9963 39 1 3.2361 2.7238 -3.3398 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490087508.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:02:48 Heat of formation + Delta-G solvation = -156.356161 kcal Electronic energy + Delta-G solvation = -30339.580946 eV Core-core repulsion = 25818.518455 eV Total energy + Delta-G solvation = -4521.062491 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.084 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.45662 -47.43282 -40.00486 -37.54716 -36.62801 -36.43151 -35.30480 -33.19218 -31.98354 -31.21068 -30.24895 -28.08086 -26.24985 -24.98741 -23.35241 -22.45878 -21.83827 -19.76589 -19.38329 -18.62462 -18.07891 -17.99357 -17.12284 -16.90358 -16.64629 -16.23263 -15.73952 -15.13385 -14.78361 -14.70375 -14.39436 -14.19089 -14.03287 -13.87325 -13.74752 -13.74063 -13.16298 -13.04739 -12.70868 -12.57672 -12.22034 -12.10600 -11.99998 -11.84894 -11.56667 -11.48472 -11.32183 -11.27653 -10.97785 -10.68491 -10.48700 -10.31360 -10.19377 -9.60969 -9.22911 -9.11622 -8.63442 -8.47766 -8.13343 -6.13926 -4.14486 0.86592 1.14010 1.41115 2.35785 2.58374 3.27274 3.32557 3.33797 3.37324 3.48141 3.72355 4.16537 4.24707 4.36387 4.52297 4.65556 4.81323 5.08695 5.16005 5.19632 5.27610 5.42625 5.44973 5.59770 5.64587 5.80223 6.02987 6.13498 6.24065 6.25698 6.37954 6.43228 6.50360 6.84815 6.90554 6.97150 7.00132 7.13391 7.38736 7.54870 8.42197 8.90181 9.46318 10.98562 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.010044 B = 0.005826 C = 0.005064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2787.062226 B = 4804.622644 C = 5527.544373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.161 4.161 3 C 0.152 3.848 4 N -0.968 5.968 5 C 0.213 3.787 6 C -0.541 4.541 7 H 0.079 0.921 8 C 0.077 3.923 9 N -0.893 5.893 10 Si 0.867 3.133 11 H -0.271 1.271 12 H -0.285 1.285 13 H -0.262 1.262 14 S 2.695 3.305 15 O -0.964 6.964 16 O -0.961 6.961 17 C -0.674 4.674 18 C 0.018 3.982 19 C -0.162 4.162 20 C -0.035 4.035 21 C -0.212 4.212 22 C 0.204 3.796 23 O -0.317 6.317 24 C 0.412 3.588 25 F -0.192 7.192 26 F -0.198 7.198 27 H 0.098 0.902 28 H 0.093 0.907 29 H 0.108 0.892 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.041 0.959 33 H 0.045 0.955 34 H 0.265 0.735 35 H 0.150 0.850 36 H 0.134 0.866 37 H 0.132 0.868 38 H 0.137 0.863 39 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.975 -3.862 -12.308 13.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.181 4.181 3 C 0.027 3.973 4 N -0.805 5.805 5 C 0.090 3.910 6 C -0.579 4.579 7 H 0.097 0.903 8 C -0.126 4.126 9 N -0.531 5.531 10 Si 0.693 3.307 11 H -0.197 1.197 12 H -0.211 1.211 13 H -0.187 1.187 14 S 2.784 3.216 15 O -0.954 6.954 16 O -0.951 6.951 17 C -0.759 4.759 18 C -0.001 4.001 19 C -0.181 4.181 20 C -0.053 4.053 21 C -0.231 4.231 22 C 0.159 3.841 23 O -0.234 6.234 24 C 0.323 3.677 25 F -0.174 7.174 26 F -0.180 7.180 27 H 0.117 0.883 28 H 0.112 0.888 29 H 0.126 0.874 30 H 0.106 0.894 31 H 0.106 0.894 32 H 0.059 0.941 33 H 0.063 0.937 34 H 0.075 0.925 35 H 0.168 0.832 36 H 0.152 0.848 37 H 0.150 0.850 38 H 0.154 0.846 39 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 4.187 -4.627 -12.080 13.597 hybrid contribution -0.200 0.938 0.600 1.131 sum 3.987 -3.689 -11.480 12.700 Atomic orbital electron populations 1.23798 0.95784 1.01628 1.01504 1.23494 0.96315 0.99387 0.98881 1.20388 0.93093 0.95343 0.88521 1.57094 1.23918 1.82474 1.17020 1.19655 0.96623 0.96317 0.78406 1.21433 1.45073 0.89794 1.01648 0.90270 1.24834 0.94839 0.94731 0.98207 1.69894 1.47564 1.07731 1.27899 0.86983 0.79528 0.80792 0.83370 1.19674 1.21051 1.18653 1.01840 0.72815 0.73808 0.73171 1.93539 1.86596 1.63020 1.52238 1.93528 1.80159 1.80635 1.40825 1.30378 1.16798 1.26818 1.01913 1.20832 0.89478 0.93510 0.96287 1.21217 1.02225 0.96888 0.97722 1.21152 0.94021 0.97373 0.92775 1.21487 1.00823 0.97789 1.02969 1.18044 0.86305 0.91680 0.88057 1.86665 1.53582 1.52778 1.30373 1.23396 0.85204 0.78075 0.81065 1.93137 1.91047 1.39894 1.93293 1.93089 1.52256 1.96246 1.76411 0.88337 0.88845 0.87399 0.89407 0.89433 0.94057 0.93739 0.92549 0.83225 0.84844 0.85026 0.84558 0.79743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.55 14.32 29.02 0.42 -2.13 16 2 C -0.16 -2.49 9.84 -36.02 -0.35 -2.84 16 3 C 0.15 2.62 5.58 -5.19 -0.03 2.59 16 4 N -0.97 -19.77 2.75 -116.94 -0.32 -20.09 16 5 C 0.21 4.98 4.50 -5.19 -0.02 4.96 16 6 C -0.54 -14.47 9.94 -34.44 -0.34 -14.81 16 7 H 0.08 2.29 8.06 -52.49 -0.42 1.87 16 8 C 0.08 2.14 5.47 -17.82 -0.10 2.04 16 9 N -0.89 -26.27 13.96 55.43 0.77 -25.50 16 10 Si 0.87 20.77 27.47 -169.99 -4.67 16.10 16 11 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 12 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 13 H -0.26 -5.97 6.54 56.52 0.37 -5.60 16 14 S 2.70 54.50 5.25 -107.50 -0.56 53.93 16 15 O -0.96 -19.39 16.27 -62.49 -1.02 -20.41 16 16 O -0.96 -21.27 15.52 -57.17 -0.89 -22.16 16 17 C -0.67 -12.86 5.92 -39.44 -0.23 -13.10 16 18 C 0.02 0.32 9.55 -39.61 -0.38 -0.06 16 19 C -0.16 -2.43 10.04 -39.56 -0.40 -2.83 16 20 C -0.03 -0.50 10.04 -39.60 -0.40 -0.90 16 21 C -0.21 -3.32 8.26 -39.43 -0.33 -3.65 16 22 C 0.20 3.59 6.43 -39.22 -0.25 3.34 16 23 O -0.32 -4.92 6.41 -29.13 -0.19 -5.11 16 24 C 0.41 4.68 5.98 101.05 0.60 5.28 16 25 F -0.19 -2.53 15.58 2.25 0.04 -2.50 16 26 F -0.20 -2.34 15.58 2.25 0.04 -2.31 16 27 H 0.10 1.28 7.84 -52.49 -0.41 0.87 16 28 H 0.09 1.08 8.06 -52.48 -0.42 0.66 16 29 H 0.11 1.65 8.06 -52.48 -0.42 1.23 16 30 H 0.09 1.52 7.76 -51.93 -0.40 1.12 16 31 H 0.09 1.36 4.85 -51.93 -0.25 1.11 16 32 H 0.04 0.94 7.17 -51.93 -0.37 0.57 16 33 H 0.04 1.07 6.34 -51.93 -0.33 0.74 16 34 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 35 H 0.15 2.49 7.33 -52.49 -0.38 2.11 16 36 H 0.13 1.58 8.06 -52.48 -0.42 1.16 16 37 H 0.13 1.41 8.06 -52.49 -0.42 0.99 16 38 H 0.14 1.89 5.10 -52.49 -0.27 1.63 16 39 H 0.19 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 348.54 15.07 5.25 5.25 Total: -1.00 -33.69 348.54 -7.49 -41.18 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: -4.12 Total: 3.70 kcal Atomic # 6 Polarization: -20.28 SS G_CDS: -1.81 Total: -22.10 kcal Atomic # 7 Polarization: -46.04 SS G_CDS: 0.45 Total: -45.59 kcal Atomic # 8 Polarization: -45.58 SS G_CDS: -2.09 Total: -47.67 kcal Atomic # 9 Polarization: -4.87 SS G_CDS: 0.07 Total: -4.80 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -4.67 Total: 16.10 kcal Atomic # 16 Polarization: 54.50 SS G_CDS: -0.56 Total: 53.93 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -33.69 -7.49 -41.18 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490087508.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.181 kcal (2) G-P(sol) polarization free energy of solvation -33.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds