Wall clock time and date at job start Wed Apr 1 2020 05:02:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50703 * 119.99791 * 2 1 4 4 N 1.46507 * 109.46918 * 125.00148 * 3 2 1 5 5 C 1.46502 * 119.99715 * 274.99920 * 4 3 2 6 6 C 1.50701 * 109.46930 * 275.00037 * 5 4 3 7 7 H 1.07994 * 120.00139 * 0.02562 * 6 5 4 8 8 C 1.37883 * 119.99889 * 179.97438 * 6 5 4 9 9 N 1.31508 * 120.00108 * 180.02562 * 8 6 5 10 10 Si 1.86798 * 119.99878 * 0.02562 * 8 6 5 11 11 H 1.48495 * 109.47411 * 89.99479 * 10 8 6 12 12 H 1.48500 * 109.46952 * 209.99689 * 10 8 6 13 13 H 1.48500 * 109.47365 * 329.99348 * 10 8 6 14 14 S 1.65591 * 120.00219 * 95.00215 * 4 3 2 15 15 O 1.42106 * 106.40082 * 336.45745 * 14 4 3 16 16 O 1.42102 * 106.40188 * 203.53787 * 14 4 3 17 17 C 1.76202 * 107.22128 * 89.99705 * 14 4 3 18 18 C 1.38163 * 120.02748 * 115.02353 * 17 14 4 19 19 C 1.38243 * 120.05438 * 179.97438 * 18 17 14 20 20 C 1.38289 * 120.11362 * 359.97438 * 19 18 17 21 21 C 1.38125 * 120.05159 * 0.02562 * 20 19 18 22 22 C 1.38708 * 120.02753 * 295.00213 * 17 14 4 23 23 O 1.35899 * 120.05461 * 359.97438 * 22 17 14 24 24 C 1.42903 * 116.99930 * 180.02562 * 23 22 17 25 25 F 1.39895 * 109.47392 * 300.00490 * 24 23 22 26 26 F 1.39899 * 109.46826 * 60.00682 * 24 23 22 27 27 H 1.07997 * 120.00121 * 359.97438 * 1 2 3 28 28 H 1.08003 * 119.99676 * 179.97438 * 1 2 3 29 29 H 1.08005 * 120.00279 * 180.02562 * 2 1 3 30 30 H 1.09000 * 109.47121 * 4.99995 * 3 2 1 31 31 H 1.09000 * 109.46936 * 244.99589 * 3 2 1 32 32 H 1.09003 * 109.47154 * 35.00149 * 5 4 3 33 33 H 1.08999 * 109.46882 * 154.99983 * 5 4 3 34 34 H 0.96993 * 120.00381 * 180.02562 * 9 8 6 35 35 H 1.08001 * 119.97024 * 359.97438 * 18 17 14 36 36 H 1.08004 * 119.94070 * 180.02562 * 19 18 17 37 37 H 1.07993 * 119.96940 * 180.28495 * 20 19 18 38 38 H 1.08000 * 120.02364 * 180.02562 * 21 20 19 39 39 H 1.08998 * 109.46876 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9938 1.3319 1.1315 5 6 2.5284 1.7621 2.4523 6 6 2.5990 3.2646 2.5450 7 1 2.9545 3.8414 1.7040 8 6 2.2087 3.9030 3.7031 9 7 2.2699 5.2142 3.7839 10 14 1.5931 2.9054 5.1575 11 1 2.7379 2.5496 6.0339 12 1 0.6105 3.7087 5.9283 13 1 0.9415 1.6646 4.6664 14 16 4.5712 0.8760 0.9174 15 8 4.5923 0.0263 -0.2215 16 8 5.0502 0.4765 2.1942 17 6 5.4768 2.3218 0.4763 18 6 6.4547 2.8097 1.3215 19 6 7.1659 3.9437 0.9757 20 6 6.9010 4.5921 -0.2166 21 6 5.9243 4.1081 -1.0650 22 6 5.2087 2.9706 -0.7200 23 8 4.2480 2.4920 -1.5535 24 6 4.0263 3.2109 -2.7685 25 9 3.6459 4.5238 -2.4709 26 9 5.2045 3.2263 -3.5227 27 1 -0.5400 0.9353 0.0004 28 1 -0.5400 -0.9354 -0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.3585 2.1317 0.0896 31 1 2.6213 1.4026 -0.9314 32 1 1.4982 1.4371 2.5982 33 1 3.1612 1.3204 3.2221 34 1 1.9957 5.6632 4.5987 35 1 6.6637 2.3049 2.2531 36 1 7.9303 4.3233 1.6376 37 1 7.4612 5.4750 -0.4866 38 1 5.7181 4.6146 -1.9963 39 1 3.2361 2.7238 -3.3398 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490087508.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:02:47 Heat of formation + Delta-G solvation = -178.918051 kcal Electronic energy + Delta-G solvation = -30340.559303 eV Core-core repulsion = 25818.518455 eV Total energy + Delta-G solvation = -4522.040848 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.084 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.40270 -48.38500 -41.19300 -38.79418 -38.15448 -37.96543 -36.92510 -34.94437 -33.65641 -32.46437 -31.45054 -29.89641 -27.22726 -26.51296 -24.64815 -23.75268 -23.56883 -20.99887 -20.59044 -19.86997 -19.32534 -19.04228 -18.95711 -18.35154 -18.18890 -17.56337 -17.12454 -16.48699 -16.02367 -16.01723 -15.85558 -15.62586 -15.32958 -15.05992 -15.02119 -14.71562 -14.59867 -14.45317 -14.17828 -13.84891 -13.71814 -13.45783 -13.36144 -13.31040 -13.21030 -13.13258 -13.02022 -12.49323 -12.42572 -12.34100 -12.01650 -11.89591 -11.76044 -11.65605 -10.75997 -10.51865 -10.28617 -9.82915 -9.66515 -8.26846 -6.31193 -0.59477 -0.21923 0.16294 1.30517 1.38062 1.41069 1.45037 1.49276 2.03737 2.36157 2.39325 2.41854 2.72097 3.07526 3.28346 3.38263 3.60254 3.71229 3.77483 3.94489 4.04251 4.17159 4.21558 4.36278 4.44023 4.58041 4.73569 4.85830 4.89867 4.96558 5.07082 5.13191 5.23695 5.29176 5.32393 5.47749 5.66404 5.78362 5.81292 5.98238 6.32247 6.73087 7.32624 8.88593 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.010044 B = 0.005826 C = 0.005064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2787.062226 B = 4804.622644 C = 5527.544373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.187 4.187 3 C 0.146 3.854 4 N -0.973 5.973 5 C 0.222 3.778 6 C -0.534 4.534 7 H 0.045 0.955 8 C 0.023 3.977 9 N -0.937 5.937 10 Si 0.922 3.078 11 H -0.270 1.270 12 H -0.280 1.280 13 H -0.241 1.241 14 S 2.701 3.299 15 O -0.968 6.968 16 O -0.989 6.989 17 C -0.702 4.702 18 C -0.009 4.009 19 C -0.164 4.164 20 C -0.030 4.030 21 C -0.222 4.222 22 C 0.191 3.809 23 O -0.332 6.332 24 C 0.405 3.595 25 F -0.204 7.204 26 F -0.201 7.201 27 H 0.103 0.897 28 H 0.118 0.882 29 H 0.107 0.893 30 H 0.082 0.918 31 H 0.101 0.899 32 H 0.052 0.948 33 H 0.038 0.962 34 H 0.266 0.734 35 H 0.147 0.853 36 H 0.166 0.834 37 H 0.173 0.827 38 H 0.153 0.847 39 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.406 -4.217 -13.076 14.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.207 4.207 3 C 0.022 3.978 4 N -0.810 5.810 5 C 0.097 3.903 6 C -0.573 4.573 7 H 0.064 0.936 8 C -0.176 4.176 9 N -0.577 5.577 10 Si 0.746 3.254 11 H -0.196 1.196 12 H -0.205 1.205 13 H -0.164 1.164 14 S 2.792 3.208 15 O -0.958 6.958 16 O -0.979 6.979 17 C -0.790 4.790 18 C -0.028 4.028 19 C -0.182 4.182 20 C -0.048 4.048 21 C -0.241 4.241 22 C 0.146 3.854 23 O -0.249 6.249 24 C 0.317 3.683 25 F -0.186 7.186 26 F -0.182 7.182 27 H 0.122 0.878 28 H 0.136 0.864 29 H 0.125 0.875 30 H 0.100 0.900 31 H 0.119 0.881 32 H 0.070 0.930 33 H 0.056 0.944 34 H 0.075 0.925 35 H 0.165 0.835 36 H 0.184 0.816 37 H 0.191 0.809 38 H 0.170 0.830 39 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges 3.596 -5.026 -12.876 14.282 hybrid contribution 0.016 1.139 0.685 1.329 sum 3.612 -3.887 -12.191 13.296 Atomic orbital electron populations 1.24048 0.95058 1.03045 0.98129 1.23370 0.97011 0.98317 1.01960 1.20590 0.92878 0.96353 0.88001 1.57055 1.24681 1.82424 1.16825 1.19389 0.97056 0.93870 0.79958 1.21571 1.43819 0.91429 1.00450 0.93626 1.25622 0.95273 0.95620 1.01059 1.70022 1.49331 1.09484 1.28869 0.86080 0.79209 0.80163 0.79956 1.19554 1.20503 1.16395 1.01407 0.72663 0.74110 0.72574 1.93514 1.86662 1.63732 1.51941 1.93479 1.80639 1.81635 1.42191 1.30201 1.18070 1.27198 1.03560 1.21081 0.90260 0.94977 0.96475 1.21638 1.02285 0.95764 0.98550 1.21710 0.93224 0.98015 0.91813 1.21839 1.00959 0.97345 1.03960 1.18255 0.86961 0.92150 0.88078 1.86637 1.53029 1.53729 1.31512 1.24363 0.86231 0.77713 0.80013 1.93109 1.91098 1.41009 1.93369 1.93078 1.52800 1.96203 1.76145 0.87844 0.86388 0.87508 0.89979 0.88146 0.92995 0.94405 0.92453 0.83487 0.81612 0.80930 0.82965 0.74287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.02 14.32 67.78 0.97 -3.05 16 2 C -0.19 -5.52 9.84 25.65 0.25 -5.27 16 3 C 0.15 4.98 5.58 85.63 0.48 5.45 16 4 N -0.97 -40.02 2.75 -523.88 -1.44 -41.46 16 5 C 0.22 10.36 4.50 85.63 0.39 10.75 16 6 C -0.53 -29.05 9.94 25.60 0.25 -28.80 16 7 H 0.05 2.74 8.06 -2.91 -0.02 2.72 16 8 C 0.02 1.31 5.47 84.66 0.46 1.77 16 9 N -0.94 -56.09 13.96 21.45 0.30 -55.79 16 10 Si 0.92 42.38 27.47 68.60 1.88 44.27 16 11 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 12 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 13 H -0.24 -10.14 6.54 99.48 0.65 -9.49 16 14 S 2.70 111.46 5.25 -56.49 -0.30 111.17 16 15 O -0.97 -39.36 16.27 -122.92 -2.00 -41.36 16 16 O -0.99 -45.04 15.52 -128.00 -1.99 -47.03 16 17 C -0.70 -27.39 5.92 22.36 0.13 -27.26 16 18 C -0.01 -0.31 9.55 22.25 0.21 -0.10 16 19 C -0.16 -4.75 10.04 22.28 0.22 -4.53 16 20 C -0.03 -0.80 10.04 22.25 0.22 -0.57 16 21 C -0.22 -6.74 8.26 22.36 0.18 -6.56 16 22 C 0.19 6.73 6.43 22.50 0.14 6.88 16 23 O -0.33 -10.14 6.41 -83.12 -0.53 -10.67 16 24 C 0.41 8.55 5.98 113.37 0.68 9.23 16 25 F -0.20 -5.16 15.58 44.97 0.70 -4.46 16 26 F -0.20 -4.42 15.58 44.97 0.70 -3.72 16 27 H 0.10 2.43 7.84 -2.91 -0.02 2.40 16 28 H 0.12 2.31 8.06 -2.91 -0.02 2.28 16 29 H 0.11 3.17 8.06 -2.91 -0.02 3.15 16 30 H 0.08 2.83 7.76 -2.39 -0.02 2.81 16 31 H 0.10 3.09 4.85 -2.39 -0.01 3.07 16 32 H 0.05 2.31 7.17 -2.39 -0.02 2.29 16 33 H 0.04 1.83 6.34 -2.39 -0.02 1.81 16 34 H 0.27 14.97 8.31 -92.71 -0.77 14.20 16 35 H 0.15 5.14 7.33 -2.91 -0.02 5.12 16 36 H 0.17 3.58 8.06 -2.91 -0.02 3.55 16 37 H 0.17 3.09 8.06 -2.91 -0.02 3.07 16 38 H 0.15 4.01 5.10 -2.91 -0.01 3.99 16 39 H 0.24 2.19 8.14 -2.39 -0.02 2.17 16 Total: -1.00 -74.35 348.54 2.97 -71.39 By element: Atomic # 1 Polarization: 18.69 SS G_CDS: 1.04 Total: 19.73 kcal Atomic # 6 Polarization: -46.67 SS G_CDS: 4.60 Total: -42.07 kcal Atomic # 7 Polarization: -96.11 SS G_CDS: -1.14 Total: -97.25 kcal Atomic # 8 Polarization: -94.53 SS G_CDS: -4.52 Total: -99.05 kcal Atomic # 9 Polarization: -9.58 SS G_CDS: 1.40 Total: -8.18 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 1.88 Total: 44.27 kcal Atomic # 16 Polarization: 111.46 SS G_CDS: -0.30 Total: 111.17 kcal Total: -74.35 2.97 -71.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490087508.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.530 kcal (2) G-P(sol) polarization free energy of solvation -74.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds