Wall clock time and date at job start Wed Apr 1 2020 03:59:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47193 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47661 * 5.51558 * 3 2 1 5 5 S 1.65604 * 120.00356 * 164.72318 * 4 3 2 6 6 O 1.42098 * 106.40262 * 178.54195 * 5 4 3 7 7 O 1.42096 * 106.40264 * 311.46292 * 5 4 3 8 8 C 1.76201 * 107.21579 * 65.00192 * 5 4 3 9 9 C 1.38372 * 119.84738 * 269.72797 * 8 5 4 10 10 C 1.37942 * 120.15084 * 179.72745 * 9 8 5 11 11 C 1.39644 * 119.84225 * 0.56547 * 10 9 8 12 12 C 1.47731 * 120.14820 * 179.68503 * 11 10 9 13 13 O 1.21595 * 119.99907 * 141.68301 * 12 11 10 14 14 N 1.34770 * 120.00140 * 321.68606 * 12 11 10 15 15 C 1.36871 * 120.00454 * 186.42035 * 14 12 11 16 16 H 1.08007 * 119.99546 * 346.59009 * 15 14 12 17 17 C 1.39046 * 120.00210 * 166.58229 * 15 14 12 18 18 N 1.31362 * 119.99814 * 36.50629 * 17 15 14 19 19 Si 1.86803 * 120.00274 * 216.49896 * 17 15 14 20 20 H 1.48497 * 109.46858 * 90.00326 * 19 17 15 21 21 H 1.48500 * 109.47007 * 210.00537 * 19 17 15 22 22 H 1.48502 * 109.46677 * 330.00447 * 19 17 15 23 23 C 1.46505 * 119.99877 * 6.42771 * 14 12 11 24 24 C 1.47193 * 109.47668 * 107.76216 * 23 14 12 25 25 N 8.92627 * 146.88968 * 208.25716 * 2 1 3 26 26 C 1.39647 * 119.70116 * 359.70702 * 11 10 9 27 27 C 1.37927 * 119.84534 * 359.97438 * 26 11 10 28 28 H 4.40641 * 5.51361 * 180.02562 * 4 1 2 29 29 H 1.09004 * 109.47251 * 245.51301 * 3 2 1 30 30 H 1.09007 * 109.47251 * 125.51725 * 3 2 1 31 31 H 0.97002 * 119.99709 * 345.00024 * 4 3 2 32 32 H 1.07996 * 119.92677 * 0.02562 * 9 8 5 33 33 H 1.07996 * 120.07469 * 180.25600 * 10 9 8 34 34 H 0.96996 * 120.00003 * 179.97438 * 18 17 15 35 35 H 1.09002 * 109.46660 * 227.76402 * 23 14 12 36 36 H 1.09004 * 109.47023 * 347.75550 * 23 14 12 37 37 H 1.08002 * 120.07422 * 179.97438 * 26 11 10 38 38 H 1.08008 * 119.92236 * 180.02562 * 27 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1350 -1.3739 -0.1328 5 16 4.7155 -1.6548 -0.5396 6 8 4.8815 -3.0660 -0.5538 7 8 4.9942 -0.8281 -1.6612 8 6 5.7100 -1.0502 0.7834 9 6 6.1575 0.2590 0.7660 10 6 6.9316 0.7405 1.8012 11 6 7.2734 -0.1002 2.8625 12 6 8.1079 0.4064 3.9713 13 8 7.8762 0.0606 5.1138 14 7 9.1261 1.2518 3.7165 15 6 9.9797 1.6178 4.7218 16 1 9.7223 1.4121 5.7504 17 6 11.1783 2.2542 4.4190 18 7 11.2328 3.1150 3.4283 19 14 12.7111 1.8851 5.4210 20 1 13.4446 0.7509 4.8040 21 1 13.5860 3.0847 5.4474 22 1 12.3210 1.5264 6.8082 23 6 9.3192 1.7792 2.3634 24 6 8.9407 3.2013 2.3323 25 7 8.6509 4.2949 2.3084 26 6 6.8230 -1.4221 2.8709 27 6 6.0441 -1.8884 1.8325 28 1 -1.0498 -0.0004 -0.0002 29 1 3.0091 0.4268 0.9353 30 1 3.0091 0.5979 -0.8365 31 1 2.5320 -2.1194 0.0137 32 1 5.8960 0.9068 -0.0577 33 1 7.2768 1.7637 1.7883 34 1 12.0689 3.5593 3.2172 35 1 10.3663 1.6756 2.0791 36 1 8.6960 1.2219 1.6639 37 1 7.0840 -2.0776 3.6886 38 1 5.6947 -2.9104 1.8380 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490594468.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:59:16 Heat of formation + Delta-G solvation = 45.320956 kcal Electronic energy + Delta-G solvation = -27179.047639 eV Core-core repulsion = 23117.419710 eV Total energy + Delta-G solvation = -4061.627928 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.077 amu Computer time = 2.13 seconds Orbital eigenvalues (eV) -40.04563 -37.96560 -37.43204 -36.35130 -36.09889 -36.00388 -34.52304 -32.62066 -32.57581 -31.14380 -31.01290 -27.72490 -26.83158 -25.75031 -23.47873 -22.77034 -20.06405 -19.82936 -19.07126 -18.33906 -18.15392 -17.38911 -16.98443 -16.43211 -16.38741 -15.65859 -15.10659 -15.01093 -14.77221 -14.62103 -14.37446 -13.98178 -13.93131 -13.77942 -13.36499 -13.04650 -12.76776 -12.53019 -12.37002 -12.25166 -12.19206 -12.15496 -11.78047 -11.50937 -11.40675 -11.17333 -11.15957 -10.94950 -10.84977 -10.72920 -10.53485 -10.51169 -9.82683 -9.27012 -9.22357 -8.96747 -8.78294 -8.48414 -6.94901 -4.12193 0.15359 0.62412 1.33501 2.20420 2.44324 2.85954 3.01959 3.09486 3.13547 3.21836 3.49782 3.59193 3.75569 3.86928 3.90567 3.98898 4.23811 4.39382 4.61925 4.76803 4.85273 4.87053 5.10110 5.12696 5.19176 5.33689 5.34531 5.44315 5.59273 5.68411 5.77874 5.93855 6.06600 6.15403 6.34658 6.44535 6.57046 6.82398 7.14252 7.17989 7.62955 8.00255 8.61086 8.71911 8.88233 9.46959 10.09916 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.017665 B = 0.002823 C = 0.002726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.701189 B = 9914.569919 C =10270.633876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.199 4.199 3 C 0.226 3.774 4 N -1.118 6.118 5 S 2.701 3.299 6 O -0.956 6.956 7 O -0.955 6.955 8 C -0.685 4.685 9 C -0.024 4.024 10 C -0.142 4.142 11 C -0.030 4.030 12 C 0.462 3.538 13 O -0.571 6.571 14 N -0.416 5.416 15 C -0.327 4.327 16 H 0.119 0.881 17 C 0.050 3.950 18 N -0.837 5.837 19 Si 0.920 3.080 20 H -0.271 1.271 21 H -0.283 1.283 22 H -0.264 1.264 23 C 0.183 3.817 24 C 0.251 3.749 25 N -0.460 5.460 26 C -0.101 4.101 27 C -0.020 4.020 28 H 0.221 0.779 29 H 0.094 0.906 30 H 0.105 0.895 31 H 0.421 0.579 32 H 0.142 0.858 33 H 0.143 0.857 34 H 0.282 0.718 35 H 0.122 0.878 36 H 0.110 0.890 37 H 0.140 0.860 38 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.142 -7.979 -9.035 17.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.200 4.200 3 C 0.102 3.898 4 N -0.877 5.877 5 S 2.792 3.208 6 O -0.947 6.947 7 O -0.945 6.945 8 C -0.774 4.774 9 C -0.044 4.044 10 C -0.162 4.162 11 C -0.034 4.034 12 C 0.252 3.748 13 O -0.455 6.455 14 N -0.133 5.133 15 C -0.452 4.452 16 H 0.137 0.863 17 C -0.159 4.159 18 N -0.472 5.472 19 Si 0.744 3.256 20 H -0.196 1.196 21 H -0.209 1.209 22 H -0.188 1.188 23 C 0.057 3.943 24 C -0.068 4.068 25 N -0.140 5.140 26 C -0.121 4.121 27 C -0.039 4.039 28 H 0.238 0.762 29 H 0.112 0.888 30 H 0.123 0.877 31 H 0.255 0.745 32 H 0.160 0.840 33 H 0.160 0.840 34 H 0.093 0.907 35 H 0.140 0.860 36 H 0.127 0.873 37 H 0.158 0.842 38 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -13.049 -6.579 -9.378 17.364 hybrid contribution 0.801 -0.219 1.243 1.495 sum -12.247 -6.799 -8.135 16.199 Atomic orbital electron populations 1.25001 0.95944 0.97526 1.00811 1.22754 0.94071 1.02427 1.00777 1.18169 0.85082 0.82909 1.03671 1.55628 1.29200 1.13350 1.89521 1.01620 0.71966 0.73340 0.73837 1.93597 1.84933 1.29202 1.86934 1.93590 1.83665 1.69890 1.47387 1.30673 1.21870 1.04713 1.20177 1.20812 0.93180 0.92995 0.97409 1.21837 0.99291 1.00959 0.94078 1.20664 0.94604 0.94389 0.93756 1.17677 0.83668 0.85202 0.88221 1.90670 1.70618 1.62955 1.21306 1.43688 1.25325 1.36558 1.07752 1.19764 0.96449 1.39033 0.89982 0.86302 1.25405 0.99696 0.93527 0.97275 1.69983 1.28064 1.18588 1.30565 0.86032 0.80363 0.78445 0.80717 1.19595 1.20917 1.18815 1.19729 1.04813 0.82976 0.86827 1.28548 0.90684 0.94951 0.92579 1.80725 1.12541 1.12340 1.08420 1.21294 0.97414 0.94775 0.98619 1.20793 0.93647 0.98550 0.90931 0.76210 0.88829 0.87676 0.74458 0.84018 0.83952 0.90730 0.86020 0.87283 0.84168 0.84131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 45. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.22 19.25 29.55 0.57 -0.65 16 2 C -0.20 -1.65 13.49 -37.13 -0.50 -2.16 16 3 C 0.23 1.76 6.70 -6.83 -0.05 1.72 16 4 N -1.12 -8.98 5.98 -13.15 -0.08 -9.06 16 5 S 2.70 28.77 5.74 -107.50 -0.62 28.15 16 6 O -0.96 -12.39 17.27 -57.17 -0.99 -13.38 16 7 O -0.96 -12.36 16.73 -57.17 -0.96 -13.32 16 8 C -0.69 -8.14 5.95 -39.48 -0.24 -8.37 16 9 C -0.02 -0.30 9.50 -39.64 -0.38 -0.68 16 10 C -0.14 -2.12 7.36 -39.17 -0.29 -2.41 16 11 C -0.03 -0.51 5.41 -104.97 -0.57 -1.08 16 12 C 0.46 10.09 7.31 -12.38 -0.09 10.00 16 13 O -0.57 -14.41 16.51 5.28 0.09 -14.32 16 14 N -0.42 -9.31 2.67 -119.05 -0.32 -9.63 16 15 C -0.33 -8.05 9.12 -15.00 -0.14 -8.19 16 16 H 0.12 3.14 7.42 -52.48 -0.39 2.76 16 17 C 0.05 1.16 5.00 -17.45 -0.09 1.07 16 18 N -0.84 -19.49 9.03 55.50 0.50 -18.99 16 19 Si 0.92 18.45 29.68 -169.99 -5.04 13.41 16 20 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 21 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 22 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 23 C 0.18 3.51 4.80 -6.83 -0.03 3.48 16 24 C 0.25 5.32 11.67 -20.90 -0.24 5.07 16 25 N -0.46 -10.50 18.51 41.99 0.78 -9.72 16 26 C -0.10 -1.51 9.63 -39.17 -0.38 -1.89 16 27 C -0.02 -0.24 9.50 -39.64 -0.38 -0.62 16 28 H 0.22 0.78 7.80 -54.10 -0.42 0.36 16 29 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.11 0.74 7.75 -51.93 -0.40 0.34 16 31 H 0.42 2.72 8.63 -34.47 -0.30 2.42 16 32 H 0.14 1.41 7.60 -52.49 -0.40 1.02 16 33 H 0.14 2.18 4.53 -52.49 -0.24 1.94 16 34 H 0.28 6.25 8.31 -40.82 -0.34 5.91 16 35 H 0.12 2.36 6.55 -51.93 -0.34 2.02 16 36 H 0.11 1.72 3.82 -51.93 -0.20 1.53 16 37 H 0.14 2.03 8.05 -52.49 -0.42 1.61 16 38 H 0.14 1.42 7.60 -52.48 -0.40 1.02 16 LS Contribution 354.32 15.07 5.34 5.34 Total: -1.00 -33.20 354.32 -7.15 -40.35 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: -3.06 Total: 5.88 kcal Atomic # 6 Polarization: -1.92 SS G_CDS: -2.79 Total: -4.71 kcal Atomic # 7 Polarization: -48.28 SS G_CDS: 0.88 Total: -47.40 kcal Atomic # 8 Polarization: -39.16 SS G_CDS: -1.86 Total: -41.02 kcal Atomic # 14 Polarization: 18.45 SS G_CDS: -5.04 Total: 13.41 kcal Atomic # 16 Polarization: 28.77 SS G_CDS: -0.62 Total: 28.15 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -33.20 -7.15 -40.35 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490594468.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.676 kcal (2) G-P(sol) polarization free energy of solvation -33.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.355 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.13 seconds