Wall clock time and date at job start Wed Apr 1 2020 03:59:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47193 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47661 * 5.51558 * 3 2 1 5 5 S 1.65604 * 120.00356 * 164.72318 * 4 3 2 6 6 O 1.42098 * 106.40262 * 178.54195 * 5 4 3 7 7 O 1.42096 * 106.40264 * 311.46292 * 5 4 3 8 8 C 1.76201 * 107.21579 * 65.00192 * 5 4 3 9 9 C 1.38372 * 119.84738 * 269.72797 * 8 5 4 10 10 C 1.37942 * 120.15084 * 179.72745 * 9 8 5 11 11 C 1.39644 * 119.84225 * 0.56547 * 10 9 8 12 12 C 1.47731 * 120.14820 * 179.68503 * 11 10 9 13 13 O 1.21595 * 119.99907 * 141.68301 * 12 11 10 14 14 N 1.34770 * 120.00140 * 321.68606 * 12 11 10 15 15 C 1.36871 * 120.00454 * 186.42035 * 14 12 11 16 16 H 1.08007 * 119.99546 * 346.59009 * 15 14 12 17 17 C 1.39046 * 120.00210 * 166.58229 * 15 14 12 18 18 N 1.31362 * 119.99814 * 36.50629 * 17 15 14 19 19 Si 1.86803 * 120.00274 * 216.49896 * 17 15 14 20 20 H 1.48497 * 109.46858 * 90.00326 * 19 17 15 21 21 H 1.48500 * 109.47007 * 210.00537 * 19 17 15 22 22 H 1.48502 * 109.46677 * 330.00447 * 19 17 15 23 23 C 1.46505 * 119.99877 * 6.42771 * 14 12 11 24 24 C 1.47193 * 109.47668 * 107.76216 * 23 14 12 25 25 N 8.92627 * 146.88968 * 208.25716 * 2 1 3 26 26 C 1.39647 * 119.70116 * 359.70702 * 11 10 9 27 27 C 1.37927 * 119.84534 * 359.97438 * 26 11 10 28 28 H 4.40641 * 5.51361 * 180.02562 * 4 1 2 29 29 H 1.09004 * 109.47251 * 245.51301 * 3 2 1 30 30 H 1.09007 * 109.47251 * 125.51725 * 3 2 1 31 31 H 0.97002 * 119.99709 * 345.00024 * 4 3 2 32 32 H 1.07996 * 119.92677 * 0.02562 * 9 8 5 33 33 H 1.07996 * 120.07469 * 180.25600 * 10 9 8 34 34 H 0.96996 * 120.00003 * 179.97438 * 18 17 15 35 35 H 1.09002 * 109.46660 * 227.76402 * 23 14 12 36 36 H 1.09004 * 109.47023 * 347.75550 * 23 14 12 37 37 H 1.08002 * 120.07422 * 179.97438 * 26 11 10 38 38 H 1.08008 * 119.92236 * 180.02562 * 27 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1350 -1.3739 -0.1328 5 16 4.7155 -1.6548 -0.5396 6 8 4.8815 -3.0660 -0.5538 7 8 4.9942 -0.8281 -1.6612 8 6 5.7100 -1.0502 0.7834 9 6 6.1575 0.2590 0.7660 10 6 6.9316 0.7405 1.8012 11 6 7.2734 -0.1002 2.8625 12 6 8.1079 0.4064 3.9713 13 8 7.8762 0.0606 5.1138 14 7 9.1261 1.2518 3.7165 15 6 9.9797 1.6178 4.7218 16 1 9.7223 1.4121 5.7504 17 6 11.1783 2.2542 4.4190 18 7 11.2328 3.1150 3.4283 19 14 12.7111 1.8851 5.4210 20 1 13.4446 0.7509 4.8040 21 1 13.5860 3.0847 5.4474 22 1 12.3210 1.5264 6.8082 23 6 9.3192 1.7792 2.3634 24 6 8.9407 3.2013 2.3323 25 7 8.6509 4.2949 2.3084 26 6 6.8230 -1.4221 2.8709 27 6 6.0441 -1.8884 1.8325 28 1 -1.0498 -0.0004 -0.0002 29 1 3.0091 0.4268 0.9353 30 1 3.0091 0.5979 -0.8365 31 1 2.5320 -2.1194 0.0137 32 1 5.8960 0.9068 -0.0577 33 1 7.2768 1.7637 1.7883 34 1 12.0689 3.5593 3.2172 35 1 10.3663 1.6756 2.0791 36 1 8.6960 1.2219 1.6639 37 1 7.0840 -2.0776 3.6886 38 1 5.6947 -2.9104 1.8380 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490594468.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:59:15 Heat of formation + Delta-G solvation = 21.611452 kcal Electronic energy + Delta-G solvation = -27180.075760 eV Core-core repulsion = 23117.419710 eV Total energy + Delta-G solvation = -4062.656050 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.077 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.50105 -39.35363 -38.38659 -37.84868 -37.01501 -36.94186 -36.28322 -34.25694 -33.17434 -32.45887 -32.19430 -29.34370 -27.43779 -27.37767 -24.84534 -23.91448 -21.47639 -20.73415 -20.08259 -19.72133 -19.12396 -18.55259 -18.12047 -18.03420 -17.25256 -17.01683 -16.46188 -16.11097 -16.03412 -15.83991 -15.39153 -15.35536 -15.13094 -14.83166 -14.56329 -14.33357 -14.19013 -13.98315 -13.72404 -13.47216 -13.24607 -13.22099 -13.19528 -13.15278 -13.10594 -12.46292 -12.34775 -12.17420 -12.15822 -12.02463 -11.57458 -11.49588 -10.98184 -10.75597 -10.44409 -10.32675 -10.25917 -10.05624 -8.70340 -5.98669 -0.78490 -0.49241 0.21270 1.29284 1.43493 1.52449 1.53695 1.68983 1.90213 1.91287 2.13078 2.25671 2.30328 2.46969 2.69525 2.76420 2.99782 3.22589 3.44941 3.51478 3.63780 3.79311 3.84667 4.19778 4.21240 4.30115 4.36464 4.51596 4.56019 4.78053 4.79383 4.87773 4.93736 4.97310 5.11599 5.25072 5.34969 5.68936 5.85724 5.98817 6.22872 6.65737 6.90571 6.95236 7.14866 7.73808 8.34094 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.017665 B = 0.002823 C = 0.002726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.701189 B = 9914.569919 C =10270.633876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.235 4.235 3 C 0.218 3.782 4 N -1.106 6.106 5 S 2.731 3.269 6 O -0.974 6.974 7 O -0.972 6.972 8 C -0.673 4.673 9 C -0.015 4.015 10 C -0.143 4.143 11 C -0.054 4.054 12 C 0.463 3.537 13 O -0.614 6.614 14 N -0.430 5.430 15 C -0.368 4.368 16 H 0.086 0.914 17 C 0.030 3.970 18 N -0.853 5.853 19 Si 0.977 3.023 20 H -0.260 1.260 21 H -0.278 1.278 22 H -0.276 1.276 23 C 0.188 3.812 24 C 0.263 3.737 25 N -0.492 5.492 26 C -0.104 4.104 27 C -0.010 4.010 28 H 0.249 0.751 29 H 0.103 0.897 30 H 0.113 0.887 31 H 0.430 0.570 32 H 0.173 0.827 33 H 0.138 0.862 34 H 0.286 0.714 35 H 0.121 0.879 36 H 0.146 0.854 37 H 0.139 0.861 38 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.692 -9.132 -11.187 20.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.237 4.237 3 C 0.093 3.907 4 N -0.868 5.868 5 S 2.821 3.179 6 O -0.964 6.964 7 O -0.962 6.962 8 C -0.760 4.760 9 C -0.034 4.034 10 C -0.163 4.163 11 C -0.058 4.058 12 C 0.254 3.746 13 O -0.502 6.502 14 N -0.147 5.147 15 C -0.494 4.494 16 H 0.104 0.896 17 C -0.178 4.178 18 N -0.488 5.488 19 Si 0.800 3.200 20 H -0.185 1.185 21 H -0.204 1.204 22 H -0.201 1.201 23 C 0.062 3.938 24 C -0.055 4.055 25 N -0.172 5.172 26 C -0.124 4.124 27 C -0.030 4.030 28 H 0.265 0.735 29 H 0.121 0.879 30 H 0.131 0.869 31 H 0.267 0.733 32 H 0.190 0.810 33 H 0.156 0.844 34 H 0.096 0.904 35 H 0.139 0.861 36 H 0.163 0.837 37 H 0.157 0.843 38 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -14.589 -7.729 -11.548 20.148 hybrid contribution 0.993 0.030 1.815 2.069 sum -13.596 -7.698 -9.733 18.408 Atomic orbital electron populations 1.25812 0.96845 0.95967 0.99481 1.23051 0.94692 1.03857 1.02090 1.18355 0.85310 0.82441 1.04562 1.55333 1.28067 1.14181 1.89185 1.00750 0.71984 0.72304 0.72910 1.93577 1.85519 1.30335 1.87005 1.93575 1.84318 1.70290 1.48001 1.31082 1.20725 1.04284 1.19907 1.21122 0.91625 0.93569 0.97124 1.21757 1.00004 1.00435 0.94089 1.20362 0.96023 0.95919 0.93499 1.18449 0.83183 0.84059 0.88869 1.90619 1.71780 1.64104 1.23683 1.43755 1.25295 1.37223 1.08406 1.19498 0.98486 1.41903 0.89513 0.89604 1.25916 1.00913 0.92677 0.98316 1.70004 1.28559 1.18653 1.31538 0.85205 0.77472 0.78469 0.78839 1.18477 1.20385 1.20120 1.19940 1.05564 0.82181 0.86087 1.28925 0.89740 0.95263 0.91579 1.80712 1.13753 1.13266 1.09481 1.21382 0.97608 0.93911 0.99499 1.21086 0.92188 0.99888 0.89788 0.73506 0.87901 0.86939 0.73324 0.81009 0.84444 0.90357 0.86109 0.83689 0.84315 0.81274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.83 19.25 74.32 1.43 -0.40 16 2 C -0.24 -3.33 13.49 31.12 0.42 -2.91 16 3 C 0.22 2.78 6.70 84.57 0.57 3.35 16 4 N -1.11 -14.29 5.98 -195.53 -1.17 -15.46 16 5 S 2.73 49.01 5.74 -56.49 -0.32 48.68 16 6 O -0.97 -22.02 17.27 -128.00 -2.21 -24.23 16 7 O -0.97 -21.88 16.73 -128.00 -2.14 -24.02 16 8 C -0.67 -13.77 5.95 22.33 0.13 -13.63 16 9 C -0.02 -0.33 9.50 22.23 0.21 -0.12 16 10 C -0.14 -4.06 7.36 22.54 0.17 -3.89 16 11 C -0.05 -1.85 5.41 -20.09 -0.11 -1.96 16 12 C 0.46 20.92 7.31 86.75 0.63 21.56 16 13 O -0.61 -32.59 16.51 -4.01 -0.07 -32.65 16 14 N -0.43 -19.89 2.67 -648.82 -1.73 -21.62 16 15 C -0.37 -19.02 9.12 84.10 0.77 -18.26 16 16 H 0.09 4.89 7.42 -2.91 -0.02 4.87 16 17 C 0.03 1.40 5.00 84.96 0.43 1.83 16 18 N -0.85 -40.16 9.03 21.68 0.20 -39.96 16 19 Si 0.98 38.63 29.68 68.60 2.04 40.66 16 20 H -0.26 -9.79 7.11 99.48 0.71 -9.08 16 21 H -0.28 -10.70 7.11 99.48 0.71 -10.00 16 22 H -0.28 -11.37 7.11 99.48 0.71 -10.67 16 23 C 0.19 7.24 4.80 84.57 0.41 7.65 16 24 C 0.26 11.22 11.67 89.49 1.04 12.27 16 25 N -0.49 -22.60 18.51 19.95 0.37 -22.23 16 26 C -0.10 -2.99 9.63 22.54 0.22 -2.77 16 27 C -0.01 -0.23 9.50 22.23 0.21 -0.02 16 28 H 0.25 0.92 7.80 -4.43 -0.03 0.89 16 29 H 0.10 1.10 8.14 -2.38 -0.02 1.08 16 30 H 0.11 1.26 7.75 -2.38 -0.02 1.24 16 31 H 0.43 4.24 8.63 -96.74 -0.84 3.40 16 32 H 0.17 2.74 7.60 -2.91 -0.02 2.71 16 33 H 0.14 4.06 4.53 -2.91 -0.01 4.05 16 34 H 0.29 12.67 8.31 -92.71 -0.77 11.90 16 35 H 0.12 4.70 6.55 -2.39 -0.02 4.69 16 36 H 0.15 4.47 3.82 -2.39 -0.01 4.46 16 37 H 0.14 3.98 8.05 -2.91 -0.02 3.96 16 38 H 0.17 2.78 7.60 -2.91 -0.02 2.76 16 Total: -1.00 -73.69 354.32 1.80 -71.89 By element: Atomic # 1 Polarization: 15.95 SS G_CDS: 0.32 Total: 16.26 kcal Atomic # 6 Polarization: -3.85 SS G_CDS: 6.52 Total: 2.67 kcal Atomic # 7 Polarization: -96.93 SS G_CDS: -2.34 Total: -99.27 kcal Atomic # 8 Polarization: -76.49 SS G_CDS: -4.42 Total: -80.90 kcal Atomic # 14 Polarization: 38.63 SS G_CDS: 2.04 Total: 40.66 kcal Atomic # 16 Polarization: 49.01 SS G_CDS: -0.32 Total: 48.68 kcal Total: -73.69 1.80 -71.89 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490594468.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.502 kcal (2) G-P(sol) polarization free energy of solvation -73.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.891 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds