Wall clock time and date at job start Wed Apr 1 2020 04:13:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47304 * 111.75577 * 3 2 1 5 5 C 1.36925 * 119.99697 * 97.01589 * 4 3 2 6 6 H 1.08006 * 119.99646 * 147.58548 * 5 4 3 7 7 C 1.38922 * 120.00523 * 327.57788 * 5 4 3 8 8 N 1.31457 * 119.99954 * 354.00762 * 7 5 4 9 9 Si 1.86801 * 120.00151 * 174.00049 * 7 5 4 10 10 H 1.48492 * 109.46796 * 90.00433 * 9 7 5 11 11 H 1.48502 * 109.47070 * 210.00373 * 9 7 5 12 12 H 1.48505 * 109.47133 * 330.00422 * 9 7 5 13 13 C 1.34775 * 119.99668 * 277.29158 * 4 3 2 14 14 O 1.21822 * 119.99921 * 184.31845 * 13 4 3 15 15 C 1.46160 * 120.00034 * 4.31537 * 13 4 3 16 16 N 1.34896 * 126.51174 * 5.99466 * 15 13 4 17 17 C 1.30188 * 109.74895 * 179.97438 * 16 15 13 18 18 S 1.76192 * 125.08174 * 180.02562 * 17 16 15 19 19 C 1.81401 * 104.45099 * 89.96969 * 18 17 16 20 20 O 1.42102 * 104.28168 * 206.04791 * 18 17 16 21 21 O 1.42105 * 104.27636 * 333.90061 * 18 17 16 22 22 N 1.36288 * 109.84329 * 359.97438 * 17 16 15 23 23 C 1.36514 * 132.77785 * 180.02562 * 22 17 16 24 24 C 1.35071 * 120.59547 * 179.97438 * 23 22 17 25 25 C 1.40349 * 120.43249 * 359.97438 * 24 23 22 26 26 C 1.36418 * 119.55006 * 0.02936 * 25 24 23 27 27 C 1.37282 * 107.18642 * 359.73292 * 22 17 16 28 28 H 4.40643 * 5.51501 * 179.97438 * 4 1 2 29 29 H 1.09001 * 109.47302 * 351.74759 * 3 2 1 30 30 H 1.09007 * 109.46875 * 231.75602 * 3 2 1 31 31 H 0.96994 * 120.00064 * 180.02562 * 8 7 5 32 32 H 1.08999 * 109.46545 * 60.00597 * 19 18 17 33 33 H 1.09003 * 109.47339 * 179.97438 * 19 18 17 34 34 H 1.09001 * 109.47440 * 300.00354 * 19 18 17 35 35 H 1.08006 * 119.69965 * 359.97438 * 23 22 17 36 36 H 1.08001 * 119.78821 * 180.02562 * 24 23 22 37 37 H 1.07999 * 120.22594 * 179.97438 * 25 24 23 38 38 H 1.07998 * 120.39865 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1341 0.5128 -1.2828 5 6 3.4983 1.8274 -1.4012 6 1 4.2938 2.1088 -2.0755 7 6 2.8447 2.7994 -0.6541 8 7 1.8009 2.4754 0.0764 9 14 3.4491 4.5666 -0.6875 10 1 2.7665 5.3025 -1.7818 11 1 3.1454 5.2182 0.6119 12 1 4.9159 4.5838 -0.9191 13 6 3.2195 -0.3087 -2.3479 14 8 3.6986 0.0958 -3.3923 15 6 2.7372 -1.6849 -2.2497 16 7 2.0854 -2.2344 -1.2042 17 6 1.8076 -3.4794 -1.4642 18 16 0.9612 -4.5766 -0.3760 19 6 -0.7911 -4.3690 -0.7966 20 8 1.4159 -5.8680 -0.7568 21 8 1.2275 -4.0590 0.9204 22 7 2.2682 -3.8070 -2.7043 23 6 2.2316 -4.9616 -3.4318 24 6 2.7769 -5.0138 -4.6664 25 6 3.3900 -3.8798 -5.2213 26 6 3.4333 -2.7199 -4.5046 27 6 2.8575 -2.6832 -3.2281 28 1 -1.0501 -0.0002 0.0000 29 1 3.0098 -1.0162 0.1475 30 1 3.0090 0.6370 0.8072 31 1 1.3443 3.1540 0.5976 32 1 -0.9473 -4.6327 -1.8426 33 1 -1.3960 -5.0190 -0.1643 34 1 -1.0829 -3.3312 -0.6359 35 1 1.7624 -5.8412 -3.0163 36 1 2.7402 -5.9340 -5.2307 37 1 3.8254 -3.9254 -6.2086 38 1 3.9013 -1.8389 -4.9185 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490961556.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:13:55 Heat of formation + Delta-G solvation = 74.268731 kcal Electronic energy + Delta-G solvation = -28689.847412 eV Core-core repulsion = 24629.474753 eV Total energy + Delta-G solvation = -4060.372659 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.077 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.74521 -38.53433 -37.44776 -37.09367 -36.10055 -35.07643 -33.36482 -31.93741 -31.07375 -30.92088 -29.75833 -28.50456 -26.25995 -25.07675 -24.06198 -22.97615 -22.78819 -19.83592 -19.00796 -18.09300 -17.67216 -16.84082 -16.70642 -16.64475 -16.27478 -15.91785 -15.76931 -15.63561 -15.20967 -14.74795 -14.27483 -13.96092 -13.83378 -13.51463 -13.38304 -12.77040 -12.51517 -12.36142 -12.30288 -12.24780 -12.15233 -12.03057 -11.92911 -11.48157 -11.38407 -11.16205 -11.03243 -10.71900 -10.48278 -10.36149 -10.03098 -9.49927 -9.22355 -9.05123 -8.68032 -8.46243 -7.76140 -7.60718 -6.26741 -3.96089 -0.17387 0.65333 0.91172 2.30438 2.40679 2.65912 3.17333 3.25258 3.27928 3.30639 3.71922 3.94472 3.99107 4.23932 4.34647 4.36834 4.50799 4.55053 4.58353 4.69706 4.74081 4.87455 5.05637 5.07057 5.15975 5.46132 5.51510 5.59006 5.78476 5.86233 5.98106 6.15082 6.42090 6.46785 6.77546 6.90299 6.98817 7.30707 7.53374 7.59029 8.15604 8.45133 9.10306 9.19404 9.31774 9.90634 10.70100 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.013504 B = 0.004571 C = 0.003592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2072.947556 B = 6124.615930 C = 7793.111047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.294 4.294 2 C -0.062 4.062 3 C 0.232 3.768 4 N -0.414 5.414 5 C -0.311 4.311 6 H 0.101 0.899 7 C 0.036 3.964 8 N -0.854 5.854 9 Si 0.930 3.070 10 H -0.277 1.277 11 H -0.283 1.283 12 H -0.268 1.268 13 C 0.526 3.474 14 O -0.584 6.584 15 C -0.007 4.007 16 N -0.319 5.319 17 C -0.405 4.405 18 S 2.537 3.463 19 C -0.645 4.645 20 O -0.940 6.940 21 O -0.899 6.899 22 N -0.313 5.313 23 C 0.035 3.965 24 C -0.125 4.125 25 C -0.118 4.118 26 C -0.057 4.057 27 C 0.089 3.911 28 H 0.191 0.809 29 H 0.081 0.919 30 H 0.097 0.903 31 H 0.271 0.729 32 H 0.129 0.871 33 H 0.137 0.863 34 H 0.143 0.857 35 H 0.182 0.818 36 H 0.154 0.846 37 H 0.143 0.857 38 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.434 -16.686 -4.935 17.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.313 4.313 2 C -0.064 4.064 3 C 0.110 3.890 4 N -0.129 5.129 5 C -0.440 4.440 6 H 0.119 0.881 7 C -0.171 4.171 8 N -0.490 5.490 9 Si 0.756 3.244 10 H -0.203 1.203 11 H -0.208 1.208 12 H -0.193 1.193 13 C 0.314 3.686 14 O -0.469 6.469 15 C -0.151 4.151 16 N -0.037 5.037 17 C -0.732 4.732 18 S 2.709 3.291 19 C -0.797 4.797 20 O -0.936 6.936 21 O -0.896 6.896 22 N 0.017 4.983 23 C -0.087 4.087 24 C -0.146 4.146 25 C -0.140 4.140 26 C -0.077 4.077 27 C -0.027 4.027 28 H 0.209 0.791 29 H 0.099 0.901 30 H 0.115 0.885 31 H 0.082 0.918 32 H 0.147 0.853 33 H 0.155 0.845 34 H 0.162 0.838 35 H 0.199 0.801 36 H 0.172 0.828 37 H 0.161 0.839 38 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -4.211 -16.561 -3.756 17.496 hybrid contribution -0.345 1.093 -1.246 1.693 sum -4.556 -15.468 -5.003 16.883 Atomic orbital electron populations 1.23919 0.95058 1.09199 1.03151 1.22634 0.93764 0.92601 0.97353 1.18435 0.85118 0.97920 0.87571 1.43440 1.53678 1.09053 1.06765 1.19600 1.17455 0.80599 1.26298 0.88146 1.25553 0.94682 1.00280 0.96542 1.69989 1.17340 1.34389 1.27330 0.85884 0.79278 0.81685 0.77552 1.20307 1.20816 1.19290 1.16399 0.85221 0.82617 0.84333 1.90643 1.51133 1.76155 1.28997 1.21584 1.07142 0.96225 0.90110 1.70442 1.06629 1.02463 1.24156 1.36402 1.27600 1.09464 0.99723 1.04702 0.77506 0.72910 0.74005 1.30196 1.23408 1.13494 1.12557 1.93551 1.79947 1.36339 1.83810 1.93645 1.83304 1.79305 1.33335 1.42470 1.34786 1.09155 1.11888 1.22180 1.04040 0.89100 0.93429 1.20954 0.99070 1.00372 0.94206 1.21287 0.99746 0.92125 1.00874 1.20964 0.96489 1.00073 0.90191 1.19713 0.99918 0.86903 0.96124 0.79143 0.90142 0.88534 0.91848 0.85269 0.84501 0.83847 0.80103 0.82840 0.83883 0.81710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.29 -6.63 19.22 29.55 0.57 -6.06 16 2 C -0.06 -1.51 9.27 -37.12 -0.34 -1.86 16 3 C 0.23 5.77 4.75 -6.83 -0.03 5.73 16 4 N -0.41 -11.09 2.57 -119.60 -0.31 -11.40 16 5 C -0.31 -8.66 9.08 -15.02 -0.14 -8.80 16 6 H 0.10 2.85 7.55 -52.48 -0.40 2.45 16 7 C 0.04 0.94 5.15 -17.46 -0.09 0.85 16 8 N -0.85 -22.95 9.29 55.50 0.52 -22.43 16 9 Si 0.93 20.66 29.56 -169.99 -5.02 15.64 16 10 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 11 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 12 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 13 C 0.53 13.67 7.51 -13.08 -0.10 13.57 16 14 O -0.58 -16.02 15.57 5.08 0.08 -15.94 16 15 C -0.01 -0.16 6.60 -82.57 -0.54 -0.70 16 16 N -0.32 -6.62 6.59 -9.72 -0.06 -6.68 16 17 C -0.41 -6.84 7.60 -89.48 -0.68 -7.52 16 18 S 2.54 32.62 5.93 -107.50 -0.64 31.98 16 19 C -0.65 -5.26 10.80 101.05 1.09 -4.17 16 20 O -0.94 -12.29 15.90 -57.54 -0.91 -13.21 16 21 O -0.90 -15.02 17.91 -57.54 -1.03 -16.05 16 22 N -0.31 -4.94 2.94 -61.25 -0.18 -5.12 16 23 C 0.04 0.41 10.43 -16.59 -0.17 0.24 16 24 C -0.13 -1.17 9.98 -39.91 -0.40 -1.57 16 25 C -0.12 -1.28 10.09 -39.44 -0.40 -1.67 16 26 C -0.06 -0.88 9.74 -39.54 -0.39 -1.26 16 27 C 0.09 1.64 6.72 -83.96 -0.56 1.08 16 28 H 0.19 3.52 7.80 -54.09 -0.42 3.10 16 29 H 0.08 1.90 5.99 -51.93 -0.31 1.58 16 30 H 0.10 2.45 7.01 -51.93 -0.36 2.09 16 31 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 32 H 0.13 0.79 8.14 -51.92 -0.42 0.37 16 33 H 0.14 0.72 8.14 -51.92 -0.42 0.29 16 34 H 0.14 1.26 8.14 -51.92 -0.42 0.84 16 35 H 0.18 1.63 6.53 -52.48 -0.34 1.29 16 36 H 0.15 0.81 8.06 -52.49 -0.42 0.39 16 37 H 0.14 1.06 8.06 -52.49 -0.42 0.64 16 38 H 0.17 2.64 7.19 -52.49 -0.38 2.26 16 LS Contribution 345.42 15.07 5.21 5.21 Total: -1.00 -37.28 345.42 -8.01 -45.29 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: -3.46 Total: 4.86 kcal Atomic # 6 Polarization: -9.96 SS G_CDS: -2.19 Total: -12.14 kcal Atomic # 7 Polarization: -45.59 SS G_CDS: -0.04 Total: -45.63 kcal Atomic # 8 Polarization: -43.33 SS G_CDS: -1.87 Total: -45.20 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Atomic # 16 Polarization: 32.62 SS G_CDS: -0.64 Total: 31.98 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -37.28 -8.01 -45.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490961556.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.559 kcal (2) G-P(sol) polarization free energy of solvation -37.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.290 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds