Wall clock time and date at job start Wed Apr 1 2020 04:13:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47304 * 111.75577 * 3 2 1 5 5 C 1.36925 * 119.99697 * 97.01589 * 4 3 2 6 6 H 1.08006 * 119.99646 * 147.58548 * 5 4 3 7 7 C 1.38922 * 120.00523 * 327.57788 * 5 4 3 8 8 N 1.31457 * 119.99954 * 354.00762 * 7 5 4 9 9 Si 1.86801 * 120.00151 * 174.00049 * 7 5 4 10 10 H 1.48492 * 109.46796 * 90.00433 * 9 7 5 11 11 H 1.48502 * 109.47070 * 210.00373 * 9 7 5 12 12 H 1.48505 * 109.47133 * 330.00422 * 9 7 5 13 13 C 1.34775 * 119.99668 * 277.29158 * 4 3 2 14 14 O 1.21822 * 119.99921 * 184.31845 * 13 4 3 15 15 C 1.46160 * 120.00034 * 4.31537 * 13 4 3 16 16 N 1.34896 * 126.51174 * 5.99466 * 15 13 4 17 17 C 1.30188 * 109.74895 * 179.97438 * 16 15 13 18 18 S 1.76192 * 125.08174 * 180.02562 * 17 16 15 19 19 C 1.81401 * 104.45099 * 89.96969 * 18 17 16 20 20 O 1.42102 * 104.28168 * 206.04791 * 18 17 16 21 21 O 1.42105 * 104.27636 * 333.90061 * 18 17 16 22 22 N 1.36288 * 109.84329 * 359.97438 * 17 16 15 23 23 C 1.36514 * 132.77785 * 180.02562 * 22 17 16 24 24 C 1.35071 * 120.59547 * 179.97438 * 23 22 17 25 25 C 1.40349 * 120.43249 * 359.97438 * 24 23 22 26 26 C 1.36418 * 119.55006 * 0.02936 * 25 24 23 27 27 C 1.37282 * 107.18642 * 359.73292 * 22 17 16 28 28 H 4.40643 * 5.51501 * 179.97438 * 4 1 2 29 29 H 1.09001 * 109.47302 * 351.74759 * 3 2 1 30 30 H 1.09007 * 109.46875 * 231.75602 * 3 2 1 31 31 H 0.96994 * 120.00064 * 180.02562 * 8 7 5 32 32 H 1.08999 * 109.46545 * 60.00597 * 19 18 17 33 33 H 1.09003 * 109.47339 * 179.97438 * 19 18 17 34 34 H 1.09001 * 109.47440 * 300.00354 * 19 18 17 35 35 H 1.08006 * 119.69965 * 359.97438 * 23 22 17 36 36 H 1.08001 * 119.78821 * 180.02562 * 24 23 22 37 37 H 1.07999 * 120.22594 * 179.97438 * 25 24 23 38 38 H 1.07998 * 120.39865 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1341 0.5128 -1.2828 5 6 3.4983 1.8274 -1.4012 6 1 4.2938 2.1088 -2.0755 7 6 2.8447 2.7994 -0.6541 8 7 1.8009 2.4754 0.0764 9 14 3.4491 4.5666 -0.6875 10 1 2.7665 5.3025 -1.7818 11 1 3.1454 5.2182 0.6119 12 1 4.9159 4.5838 -0.9191 13 6 3.2195 -0.3087 -2.3479 14 8 3.6986 0.0958 -3.3923 15 6 2.7372 -1.6849 -2.2497 16 7 2.0854 -2.2344 -1.2042 17 6 1.8076 -3.4794 -1.4642 18 16 0.9612 -4.5766 -0.3760 19 6 -0.7911 -4.3690 -0.7966 20 8 1.4159 -5.8680 -0.7568 21 8 1.2275 -4.0590 0.9204 22 7 2.2682 -3.8070 -2.7043 23 6 2.2316 -4.9616 -3.4318 24 6 2.7769 -5.0138 -4.6664 25 6 3.3900 -3.8798 -5.2213 26 6 3.4333 -2.7199 -4.5046 27 6 2.8575 -2.6832 -3.2281 28 1 -1.0501 -0.0002 0.0000 29 1 3.0098 -1.0162 0.1475 30 1 3.0090 0.6370 0.8072 31 1 1.3443 3.1540 0.5976 32 1 -0.9473 -4.6327 -1.8426 33 1 -1.3960 -5.0190 -0.1643 34 1 -1.0829 -3.3312 -0.6359 35 1 1.7624 -5.8412 -3.0163 36 1 2.7402 -5.9340 -5.2307 37 1 3.8254 -3.9254 -6.2086 38 1 3.9013 -1.8389 -4.9185 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490961556.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:13:54 Heat of formation + Delta-G solvation = 46.957750 kcal Electronic energy + Delta-G solvation = -28691.031705 eV Core-core repulsion = 24629.474753 eV Total energy + Delta-G solvation = -4061.556952 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.077 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.99127 -40.34676 -38.65919 -38.17420 -37.17557 -37.04158 -34.62223 -33.83384 -32.92118 -32.13279 -30.47811 -29.81171 -28.16818 -26.89850 -25.11331 -24.41908 -24.11720 -21.27234 -20.24553 -19.58784 -19.31804 -18.39932 -18.13904 -17.77901 -17.68517 -17.15392 -16.88315 -16.78579 -16.57089 -16.22884 -15.86885 -15.67697 -15.41697 -14.62442 -14.19576 -14.12652 -14.06795 -14.05495 -13.46519 -13.38491 -13.34145 -13.27047 -13.24550 -13.08526 -12.85795 -12.62743 -12.43303 -12.14482 -12.07765 -11.83526 -11.51718 -11.18283 -10.95708 -10.66702 -10.59715 -10.33035 -9.72690 -8.89948 -8.26135 -6.06833 -1.10002 -0.43631 -0.18470 0.93276 1.19085 1.40526 1.43716 1.54073 1.60652 2.09816 2.17926 2.37696 2.53639 2.64923 2.79574 2.96869 3.07789 3.13338 3.41154 3.55545 3.69742 3.86914 3.99521 4.03844 4.05274 4.11449 4.19011 4.59890 4.66348 4.80807 4.87438 4.91814 5.01199 5.14699 5.16709 5.36728 5.41901 5.53455 5.80677 6.10479 6.23766 6.49381 7.07685 7.31021 7.38215 7.92865 8.69497 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.013504 B = 0.004571 C = 0.003592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2072.947556 B = 6124.615930 C = 7793.111047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.276 4.276 2 C -0.101 4.101 3 C 0.245 3.755 4 N -0.435 5.435 5 C -0.351 4.351 6 H 0.079 0.921 7 C 0.000 4.000 8 N -0.873 5.873 9 Si 0.997 3.003 10 H -0.277 1.277 11 H -0.269 1.269 12 H -0.267 1.267 13 C 0.523 3.477 14 O -0.618 6.618 15 C -0.082 4.082 16 N -0.342 5.342 17 C -0.409 4.409 18 S 2.534 3.466 19 C -0.615 4.615 20 O -0.943 6.943 21 O -0.949 6.949 22 N -0.312 5.312 23 C 0.029 3.971 24 C -0.108 4.108 25 C -0.066 4.066 26 C -0.112 4.112 27 C 0.093 3.907 28 H 0.231 0.769 29 H 0.082 0.918 30 H 0.077 0.923 31 H 0.273 0.727 32 H 0.161 0.839 33 H 0.177 0.823 34 H 0.142 0.858 35 H 0.214 0.786 36 H 0.215 0.785 37 H 0.189 0.811 38 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.729 -20.359 -6.873 22.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.295 4.295 2 C -0.103 4.103 3 C 0.122 3.878 4 N -0.151 5.151 5 C -0.478 4.478 6 H 0.096 0.904 7 C -0.204 4.204 8 N -0.509 5.509 9 Si 0.820 3.180 10 H -0.202 1.202 11 H -0.193 1.193 12 H -0.191 1.191 13 C 0.313 3.687 14 O -0.505 6.505 15 C -0.223 4.223 16 N -0.059 5.059 17 C -0.734 4.734 18 S 2.707 3.293 19 C -0.770 4.770 20 O -0.940 6.940 21 O -0.945 6.945 22 N 0.019 4.981 23 C -0.093 4.093 24 C -0.128 4.128 25 C -0.088 4.088 26 C -0.132 4.132 27 C -0.024 4.024 28 H 0.247 0.753 29 H 0.099 0.901 30 H 0.095 0.905 31 H 0.083 0.917 32 H 0.179 0.821 33 H 0.195 0.805 34 H 0.160 0.840 35 H 0.230 0.770 36 H 0.232 0.768 37 H 0.206 0.794 38 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -6.441 -20.208 -5.684 21.958 hybrid contribution 0.281 1.791 -0.864 2.008 sum -6.159 -18.417 -6.548 20.493 Atomic orbital electron populations 1.24798 0.95992 1.07399 1.01293 1.22791 0.94205 0.94245 0.99069 1.18206 0.86033 0.97236 0.86295 1.43572 1.54844 1.09003 1.07648 1.19596 1.18453 0.82070 1.27723 0.90352 1.26328 0.94572 1.03837 0.95632 1.70111 1.17868 1.35421 1.27456 0.84894 0.78699 0.76523 0.77889 1.20233 1.19317 1.19092 1.16966 0.83754 0.84289 0.83646 1.90562 1.52384 1.77579 1.30014 1.20920 1.12380 0.95752 0.93228 1.70190 1.06762 1.04501 1.24431 1.37174 1.27381 1.08501 1.00344 1.05040 0.79672 0.71898 0.72672 1.30010 1.16991 1.14570 1.15467 1.93519 1.81493 1.35611 1.83331 1.93590 1.85243 1.79779 1.35911 1.42627 1.34126 1.09595 1.11731 1.23130 1.03795 0.88322 0.94031 1.21731 0.96090 1.01706 0.93249 1.21926 0.95310 0.90158 1.01363 1.20953 0.99973 1.01898 0.90362 1.19774 0.99347 0.86917 0.96398 0.75263 0.90058 0.90516 0.91687 0.82075 0.80498 0.83977 0.76955 0.76839 0.79413 0.83959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.28 -12.56 19.22 74.32 1.43 -11.13 16 2 C -0.10 -5.22 9.27 31.12 0.29 -4.93 16 3 C 0.24 13.22 4.75 84.57 0.40 13.62 16 4 N -0.43 -25.45 2.57 -650.47 -1.67 -27.12 16 5 C -0.35 -21.16 9.08 84.06 0.76 -20.39 16 6 H 0.08 4.89 7.55 -2.91 -0.02 4.87 16 7 C 0.00 0.01 5.15 84.91 0.44 0.44 16 8 N -0.87 -48.96 9.29 21.66 0.20 -48.76 16 9 Si 1.00 44.31 29.56 68.60 2.03 46.34 16 10 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 11 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 12 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 13 C 0.52 29.80 7.51 86.30 0.65 30.45 16 14 O -0.62 -37.23 15.57 -4.74 -0.07 -37.30 16 15 C -0.08 -3.95 6.60 41.23 0.27 -3.68 16 16 N -0.34 -14.95 6.59 -184.67 -1.22 -16.17 16 17 C -0.41 -13.79 7.60 179.95 1.37 -12.42 16 18 S 2.53 61.14 5.93 -56.49 -0.34 60.81 16 19 C -0.61 -7.34 10.80 113.37 1.22 -6.12 16 20 O -0.94 -22.05 15.90 -127.65 -2.03 -24.08 16 21 O -0.95 -32.15 17.91 -127.65 -2.29 -34.44 16 22 N -0.31 -9.43 2.94 -347.69 -1.02 -10.45 16 23 C 0.03 0.55 10.43 83.23 0.87 1.42 16 24 C -0.11 -1.34 9.98 22.05 0.22 -1.12 16 25 C -0.07 -1.13 10.09 22.36 0.23 -0.90 16 26 C -0.11 -3.42 9.74 22.29 0.22 -3.20 16 27 C 0.09 3.54 6.72 39.24 0.26 3.80 16 28 H 0.23 8.08 7.80 -4.41 -0.03 8.04 16 29 H 0.08 4.25 5.99 -2.39 -0.01 4.23 16 30 H 0.08 4.28 7.01 -2.38 -0.02 4.27 16 31 H 0.27 14.40 8.31 -92.71 -0.77 13.63 16 32 H 0.16 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.18 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.14 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.21 2.58 6.53 -2.91 -0.02 2.56 16 36 H 0.21 0.27 8.06 -2.91 -0.02 0.24 16 37 H 0.19 1.60 8.06 -2.91 -0.02 1.58 16 38 H 0.14 4.92 7.19 -2.91 -0.02 4.90 16 Total: -1.00 -93.49 345.42 3.33 -90.16 By element: Atomic # 1 Polarization: 14.07 SS G_CDS: 1.12 Total: 15.19 kcal Atomic # 6 Polarization: -22.80 SS G_CDS: 8.62 Total: -14.17 kcal Atomic # 7 Polarization: -98.80 SS G_CDS: -3.71 Total: -102.51 kcal Atomic # 8 Polarization: -91.43 SS G_CDS: -4.39 Total: -95.82 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.34 kcal Atomic # 16 Polarization: 61.14 SS G_CDS: -0.34 Total: 60.81 kcal Total: -93.49 3.33 -90.16 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490961556.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.116 kcal (2) G-P(sol) polarization free energy of solvation -93.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.158 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds