Wall clock time and date at job start Wed Apr 1 2020 03:56:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46505 * 109.46784 * 106.08001 * 3 2 1 5 5 C 1.37099 * 120.00294 * 263.18080 * 4 3 2 6 6 H 1.07994 * 119.99880 * 202.48850 * 5 4 3 7 7 C 1.38952 * 119.99659 * 22.48835 * 5 4 3 8 8 N 1.31415 * 120.00070 * 8.86631 * 7 5 4 9 9 Si 1.86801 * 119.99873 * 188.86311 * 7 5 4 10 10 H 1.48496 * 109.47095 * 60.00094 * 9 7 5 11 11 H 1.48493 * 109.46841 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.46822 * 300.00262 * 9 7 5 13 13 C 1.34777 * 119.99827 * 83.18512 * 4 3 2 14 14 O 1.21297 * 119.99997 * 179.97438 * 13 4 3 15 15 C 1.50706 * 120.00291 * 0.02562 * 13 4 3 16 16 N 1.46491 * 109.47303 * 180.02562 * 15 13 4 17 17 C 1.30241 * 120.00155 * 187.74311 * 16 15 13 18 18 N 1.37168 * 121.40737 * 174.13858 * 17 16 15 19 19 S 1.67119 * 105.65747 * 180.02562 * 18 17 16 20 20 O 1.42098 * 107.47397 * 247.91156 * 19 18 17 21 21 O 1.42098 * 107.47854 * 112.08046 * 19 18 17 22 22 C 1.77118 * 100.11096 * 359.97438 * 19 18 17 23 23 C 1.36869 * 133.76924 * 180.02562 * 22 19 18 24 24 C 1.38648 * 119.77011 * 179.97438 * 23 22 19 25 25 C 1.38358 * 119.53103 * 0.27681 * 24 23 22 26 26 C 1.37619 * 120.85387 * 359.45239 * 25 24 23 27 27 C 1.39816 * 104.31346 * 359.97438 * 22 19 18 28 28 H 4.40634 * 5.51442 * 180.02562 * 4 1 2 29 29 H 1.08999 * 109.47413 * 346.08572 * 3 2 1 30 30 H 1.08994 * 109.47557 * 226.07767 * 3 2 1 31 31 H 0.96999 * 119.99735 * 179.97438 * 8 7 5 32 32 H 1.08998 * 109.47017 * 59.99606 * 15 13 4 33 33 H 1.09003 * 109.46557 * 299.99961 * 15 13 4 34 34 H 0.96991 * 127.17170 * 0.03325 * 18 17 16 35 35 H 1.07991 * 120.11711 * 359.93538 * 23 22 19 36 36 H 1.07998 * 120.23157 * 180.02562 * 24 23 22 37 37 H 1.07997 * 119.57072 * 179.71830 * 25 24 23 38 38 H 1.07997 * 119.81010 * 180.26064 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1340 0.3835 -1.3273 5 6 3.4959 -0.5831 -2.2297 6 1 4.1740 -0.3431 -3.0352 7 6 2.9900 -1.8715 -2.1079 8 7 2.0356 -2.1235 -1.2403 9 14 3.6664 -3.2455 -3.1775 10 1 5.1199 -3.4048 -2.9182 11 1 2.9640 -4.5139 -2.8569 12 1 3.4528 -2.9098 -4.6082 13 6 3.2274 1.6859 -1.6611 14 8 3.6320 2.0029 -2.7598 15 6 2.8304 2.7485 -0.6689 16 7 3.0218 4.0717 -1.2676 17 6 2.8852 5.1423 -0.5386 18 7 3.1726 6.3876 -1.0366 19 16 2.8642 7.4549 0.2119 20 8 1.7357 8.2335 -0.1613 21 8 4.1098 7.9998 0.6250 22 6 2.3365 6.3215 1.4665 23 6 1.9212 6.4697 2.7622 24 6 1.5650 5.3530 3.5029 25 6 1.6392 4.0986 2.9240 26 6 2.0511 3.9464 1.6197 27 6 2.4148 5.0670 0.8542 28 1 -1.0501 0.0001 0.0002 29 1 3.0098 -0.9967 0.2471 30 1 3.0090 0.7136 0.7401 31 1 1.6823 -3.0228 -1.1556 32 1 3.4486 2.6606 0.2245 33 1 1.7820 2.6202 -0.3993 34 1 3.4889 6.6038 -1.9277 35 1 1.8717 7.4528 3.2064 36 1 1.2358 5.4613 4.5258 37 1 1.3662 3.2280 3.5018 38 1 2.0987 2.9597 1.1834 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490984477.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:56:43 Heat of formation + Delta-G solvation = 57.790139 kcal Electronic energy + Delta-G solvation = -27705.051383 eV Core-core repulsion = 23643.964159 eV Total energy + Delta-G solvation = -4061.087224 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.077 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -40.54826 -38.69908 -37.55643 -37.55273 -36.21798 -35.26833 -34.11748 -32.15584 -31.77540 -31.29546 -31.12819 -27.98440 -26.44181 -24.68024 -23.89460 -23.56169 -21.12282 -20.24132 -19.12125 -18.27536 -17.96054 -17.37841 -17.17943 -16.73580 -16.49479 -16.42622 -15.38205 -15.17374 -15.06915 -15.00422 -14.66782 -14.18992 -13.97159 -13.70070 -13.26982 -12.98358 -12.80417 -12.57276 -12.47479 -12.44087 -12.39501 -12.30358 -12.13674 -11.84279 -11.49401 -11.04467 -11.00497 -10.59727 -10.40836 -9.95843 -9.70632 -9.69976 -9.47055 -9.36315 -8.96290 -8.82365 -8.37507 -7.90298 -6.35327 -3.97922 -0.13647 0.04639 0.68653 2.11367 2.18954 2.91639 3.12628 3.16042 3.21477 3.23953 3.28584 3.55326 3.78500 3.93033 4.04426 4.12011 4.32936 4.49691 4.49848 4.70001 4.80850 4.85066 5.00423 5.03584 5.27183 5.29656 5.33912 5.40052 5.52653 5.61223 5.74500 5.81566 5.89839 6.16315 6.29649 6.64372 6.72453 6.94693 7.49567 7.53780 8.01290 8.37731 8.67391 9.07528 9.26334 9.82326 10.64567 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.018335 B = 0.003143 C = 0.002803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.801505 B = 8907.117169 C = 9987.489162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.263 4.263 2 C -0.114 4.114 3 C 0.230 3.770 4 N -0.445 5.445 5 C -0.307 4.307 6 H 0.102 0.898 7 C 0.030 3.970 8 N -0.876 5.876 9 Si 0.929 3.071 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.273 1.273 13 C 0.461 3.539 14 O -0.551 6.551 15 C 0.027 3.973 16 N -0.458 5.458 17 C 0.352 3.648 18 N -1.002 6.002 19 S 2.684 3.316 20 O -0.936 6.936 21 O -0.935 6.935 22 C -0.632 4.632 23 C 0.009 3.991 24 C -0.117 4.117 25 C -0.065 4.065 26 C -0.097 4.097 27 C -0.059 4.059 28 H 0.199 0.801 29 H 0.122 0.878 30 H 0.052 0.948 31 H 0.269 0.731 32 H 0.090 0.910 33 H 0.098 0.902 34 H 0.453 0.547 35 H 0.141 0.859 36 H 0.143 0.857 37 H 0.144 0.856 38 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.219 12.969 13.457 18.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.282 4.282 2 C -0.115 4.115 3 C 0.107 3.893 4 N -0.166 5.166 5 C -0.434 4.434 6 H 0.120 0.880 7 C -0.173 4.173 8 N -0.515 5.515 9 Si 0.756 3.244 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.199 1.199 13 C 0.248 3.752 14 O -0.432 6.432 15 C -0.107 4.107 16 N -0.174 5.174 17 C 0.070 3.930 18 N -0.762 5.762 19 S 2.773 3.227 20 O -0.925 6.925 21 O -0.924 6.924 22 C -0.722 4.722 23 C -0.010 4.010 24 C -0.137 4.137 25 C -0.083 4.083 26 C -0.118 4.118 27 C -0.065 4.065 28 H 0.216 0.784 29 H 0.139 0.861 30 H 0.070 0.930 31 H 0.080 0.920 32 H 0.107 0.893 33 H 0.115 0.885 34 H 0.298 0.702 35 H 0.158 0.842 36 H 0.161 0.839 37 H 0.162 0.838 38 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -1.772 13.583 12.046 18.241 hybrid contribution -0.504 -1.736 0.125 1.811 sum -2.275 11.847 12.171 17.137 Atomic orbital electron populations 1.24318 0.95411 1.05796 1.02633 1.23246 0.94373 0.95991 0.97930 1.18353 0.84155 1.02248 0.84583 1.43603 1.56890 1.03850 1.12215 1.19622 1.25831 0.88308 1.09660 0.88037 1.25348 0.95189 0.99026 0.97704 1.69923 1.24495 1.21781 1.35352 0.85943 0.78819 0.79408 0.80221 1.19867 1.20982 1.19865 1.19588 0.84670 0.82871 0.88119 1.90555 1.49030 1.80858 1.22735 1.22453 1.01842 0.88873 0.97522 1.71931 1.15033 0.97770 1.32678 1.19531 0.97532 0.88804 0.87123 1.52422 1.78716 1.15891 1.29202 1.02757 0.74678 0.71411 0.73808 1.93684 1.51546 1.65718 1.81585 1.93686 1.42939 1.75047 1.80734 1.30584 1.16754 1.13712 1.11130 1.20069 0.91067 0.99813 0.90054 1.21648 0.99107 0.92350 1.00583 1.21385 0.94332 0.98447 0.94133 1.21921 0.97043 0.98701 0.94115 1.19825 0.99553 0.95125 0.91992 0.78382 0.86051 0.93006 0.92024 0.89267 0.88495 0.70211 0.84171 0.83932 0.83836 0.82870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.00 19.25 29.55 0.57 -4.44 16 2 C -0.11 -2.34 10.77 -37.12 -0.40 -2.73 16 3 C 0.23 4.69 4.90 -6.83 -0.03 4.66 16 4 N -0.44 -10.80 2.60 -117.93 -0.31 -11.11 16 5 C -0.31 -8.20 9.30 -14.93 -0.14 -8.34 16 6 H 0.10 2.86 7.40 -52.49 -0.39 2.47 16 7 C 0.03 0.76 5.14 -17.47 -0.09 0.68 16 8 N -0.88 -22.01 9.04 55.50 0.50 -21.51 16 9 Si 0.93 20.20 29.56 -169.99 -5.03 15.17 16 10 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 11 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 12 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 13 C 0.46 11.08 7.62 -10.98 -0.08 11.00 16 14 O -0.55 -15.48 16.12 5.54 0.09 -15.39 16 15 C 0.03 0.49 3.22 -5.20 -0.02 0.47 16 16 N -0.46 -8.44 10.11 -61.09 -0.62 -9.06 16 17 C 0.35 5.18 7.72 -155.29 -1.20 3.98 16 18 N -1.00 -12.16 6.85 31.46 0.22 -11.95 16 19 S 2.68 30.41 6.46 -107.50 -0.69 29.71 16 20 O -0.94 -12.44 18.08 -56.98 -1.03 -13.47 16 21 O -0.93 -12.33 18.08 -56.98 -1.03 -13.36 16 22 C -0.63 -6.90 6.49 -39.49 -0.26 -7.16 16 23 C 0.01 0.08 10.02 -39.93 -0.40 -0.32 16 24 C -0.12 -0.82 10.10 -39.39 -0.40 -1.22 16 25 C -0.06 -0.53 9.98 -39.76 -0.40 -0.93 16 26 C -0.10 -1.08 8.56 -38.96 -0.33 -1.41 16 27 C -0.06 -0.74 5.89 -104.81 -0.62 -1.36 16 28 H 0.20 3.08 7.80 -54.09 -0.42 2.65 16 29 H 0.12 2.65 6.34 -51.93 -0.33 2.33 16 30 H 0.05 0.83 6.73 -51.93 -0.35 0.48 16 31 H 0.27 6.54 8.31 -40.82 -0.34 6.21 16 32 H 0.09 1.37 5.84 -51.93 -0.30 1.07 16 33 H 0.10 1.66 6.01 -51.93 -0.31 1.34 16 34 H 0.45 4.57 8.96 -40.61 -0.36 4.20 16 35 H 0.14 0.72 8.06 -52.49 -0.42 0.30 16 36 H 0.14 0.53 8.06 -52.49 -0.42 0.11 16 37 H 0.14 0.79 8.06 -52.49 -0.42 0.37 16 38 H 0.15 1.74 4.11 -52.49 -0.22 1.53 16 LS Contribution 342.85 15.07 5.17 5.17 Total: -1.00 -37.04 342.85 -9.61 -46.65 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: -3.09 Total: 6.27 kcal Atomic # 6 Polarization: -3.34 SS G_CDS: -3.79 Total: -7.13 kcal Atomic # 7 Polarization: -53.42 SS G_CDS: -0.21 Total: -53.62 kcal Atomic # 8 Polarization: -40.25 SS G_CDS: -1.97 Total: -42.22 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.03 Total: 15.17 kcal Atomic # 16 Polarization: 30.41 SS G_CDS: -0.69 Total: 29.71 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -37.04 -9.61 -46.65 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490984477.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.444 kcal (2) G-P(sol) polarization free energy of solvation -37.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.654 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds