Wall clock time and date at job start Wed Apr 1 2020 03:56:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17391 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46503 * 109.46863 * 197.62949 * 3 2 1 5 5 C 1.36934 * 119.99986 * 274.79925 * 4 3 2 6 6 H 1.08011 * 119.99636 * 146.42012 * 5 4 3 7 7 C 1.38811 * 120.00093 * 326.42227 * 5 4 3 8 8 N 1.31622 * 119.99670 * 156.59576 * 7 5 4 9 9 Si 1.86792 * 119.99879 * 336.59197 * 7 5 4 10 10 H 1.48495 * 109.47121 * 95.45186 * 9 7 5 11 11 H 1.48501 * 109.47085 * 215.44849 * 9 7 5 12 12 H 1.48497 * 109.47423 * 335.44740 * 9 7 5 13 13 S 1.65603 * 119.99830 * 94.80082 * 4 3 2 14 14 O 1.42102 * 106.40296 * 203.54113 * 13 4 3 15 15 O 1.42101 * 106.40450 * 336.46123 * 13 4 3 16 16 C 1.76198 * 107.21690 * 90.00170 * 13 4 3 17 17 C 1.38642 * 120.30532 * 90.00254 * 16 13 4 18 18 N 1.31634 * 121.51543 * 179.97438 * 17 16 13 19 19 C 1.32502 * 121.69452 * 0.02562 * 18 17 16 20 20 O 1.34797 * 133.15853 * 180.02562 * 19 18 17 21 21 N 1.41324 * 109.44983 * 180.02562 * 20 19 18 22 22 C 1.29760 * 109.75386 * 359.97438 * 21 20 19 23 23 C 1.50699 * 126.34349 * 179.97438 * 22 21 20 24 24 C 1.52999 * 117.49831 * 8.59983 * 23 22 21 25 25 C 1.52996 * 117.50120 * 299.97767 * 23 22 21 26 26 C 1.40556 * 119.94995 * 0.02562 * 19 18 17 27 27 C 1.38188 * 120.30188 * 269.72063 * 16 13 4 28 28 H 4.40642 * 5.51444 * 179.97438 * 4 1 2 29 29 H 1.09001 * 109.47371 * 77.63213 * 3 2 1 30 30 H 1.09003 * 109.47527 * 317.62666 * 3 2 1 31 31 H 0.96998 * 119.99299 * 180.02562 * 8 7 5 32 32 H 1.07998 * 119.23911 * 359.97438 * 17 16 13 33 33 H 1.09004 * 115.54705 * 154.30411 * 23 22 21 34 34 H 1.09005 * 117.49883 * 359.97438 * 24 23 22 35 35 H 1.08998 * 117.50120 * 145.02052 * 24 23 22 36 36 H 1.08999 * 117.50005 * 214.97897 * 25 23 22 37 37 H 1.09000 * 117.49768 * 359.97438 * 25 23 22 38 38 H 1.08002 * 120.97036 * 359.97438 * 27 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1336 1.3173 0.4183 5 6 3.2678 2.3219 -0.5024 6 1 3.0901 3.3472 -0.2127 7 6 3.6323 2.0228 -1.8080 8 7 3.3283 2.8533 -2.7828 9 14 4.5542 0.4417 -2.1813 10 1 3.5890 -0.6079 -2.5958 11 1 5.5253 0.6823 -3.2787 12 1 5.2811 -0.0062 -0.9664 13 16 3.5226 1.5905 2.0047 14 8 3.4162 2.9928 2.2082 15 8 2.7945 0.6371 2.7664 16 6 5.2266 1.1872 2.2007 17 6 6.2009 2.1552 2.0113 18 7 7.4805 1.8803 2.1520 19 6 7.8999 0.6671 2.4805 20 8 9.1229 0.1376 2.6825 21 7 8.9944 -1.2292 3.0181 22 6 7.7402 -1.5616 3.0310 23 6 7.1810 -2.9261 3.3413 24 6 8.1518 -3.9839 3.8699 25 6 7.6112 -4.0870 2.4424 26 6 6.9687 -0.3652 2.6874 27 6 5.6038 -0.0954 2.5503 28 1 -1.0503 -0.0004 -0.0003 29 1 3.0094 -0.2193 -1.0038 30 1 3.0097 -0.7584 0.6926 31 1 3.5827 2.6441 -3.6951 32 1 5.9031 3.1578 1.7422 33 1 6.1619 -2.9398 3.7279 34 1 9.1951 -3.6929 3.9929 35 1 7.7716 -4.6937 4.6045 36 1 6.8753 -4.8647 2.2378 37 1 8.2984 -3.8637 1.6263 38 1 4.8659 -0.8680 2.7089 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491710352.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:56:50 Heat of formation + Delta-G solvation = 114.891509 kcal Electronic energy + Delta-G solvation = -28120.828799 eV Core-core repulsion = 24062.217676 eV Total energy + Delta-G solvation = -4058.611123 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.077 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.05142 -38.74539 -37.75344 -36.72338 -36.19647 -34.76304 -33.75827 -32.92791 -31.84112 -31.70447 -30.42511 -27.02449 -25.08286 -24.35493 -23.95710 -23.63451 -22.77896 -20.11612 -19.05041 -18.67006 -18.09479 -17.81555 -16.94795 -16.70909 -16.63948 -16.40250 -15.95926 -15.89202 -15.00655 -14.70474 -14.31443 -13.91502 -13.48941 -13.44020 -13.21677 -13.17438 -13.09563 -12.79151 -12.56573 -12.31703 -12.07234 -11.86495 -11.48140 -11.31637 -11.07942 -11.02800 -11.00627 -10.85792 -10.70394 -10.57020 -10.52453 -9.96235 -9.75167 -9.60363 -9.48139 -9.28627 -9.17126 -8.61507 -6.99388 -4.38932 0.39943 0.74627 1.26250 1.78103 2.00544 2.74513 2.91624 2.94546 3.20202 3.34604 3.39607 3.44480 3.50244 3.70147 3.80161 4.05833 4.36597 4.40800 4.42872 4.52708 4.55157 4.66287 4.86103 4.90438 4.92973 5.00224 5.22125 5.24360 5.43433 5.49975 5.58503 5.63277 5.70484 5.75365 5.78461 5.90483 6.26579 6.35176 6.57642 6.95432 7.09970 7.61696 7.91718 8.15061 8.50617 8.56351 10.05870 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.011700 B = 0.004384 C = 0.004283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2392.493493 B = 6384.755105 C = 6536.037126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.169 4.169 3 C 0.223 3.777 4 N -0.817 5.817 5 C -0.243 4.243 6 H 0.134 0.866 7 C 0.068 3.932 8 N -0.802 5.802 9 Si 0.869 3.131 10 H -0.261 1.261 11 H -0.277 1.277 12 H -0.257 1.257 13 S 2.528 3.472 14 O -0.962 6.962 15 O -0.991 6.991 16 C -0.742 4.742 17 C 0.264 3.736 18 N -0.493 5.493 19 C 0.314 3.686 20 O -0.083 6.083 21 N -0.285 5.285 22 C 0.183 3.817 23 C -0.109 4.109 24 C -0.157 4.157 25 C -0.152 4.152 26 C -0.268 4.268 27 C 0.097 3.903 28 H 0.215 0.785 29 H 0.082 0.918 30 H 0.094 0.906 31 H 0.287 0.713 32 H 0.193 0.807 33 H 0.140 0.860 34 H 0.105 0.895 35 H 0.109 0.891 36 H 0.112 0.888 37 H 0.101 0.899 38 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.352 -12.231 5.185 13.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.172 4.172 3 C 0.098 3.902 4 N -0.639 5.639 5 C -0.393 4.393 6 H 0.152 0.848 7 C -0.150 4.150 8 N -0.437 5.437 9 Si 0.695 3.305 10 H -0.188 1.188 11 H -0.203 1.203 12 H -0.180 1.180 13 S 2.629 3.371 14 O -0.952 6.952 15 O -0.980 6.980 16 C -0.819 4.819 17 C 0.101 3.899 18 N -0.213 5.213 19 C 0.131 3.869 20 O -0.087 6.087 21 N -0.032 5.032 22 C 0.003 3.997 23 C -0.128 4.128 24 C -0.195 4.195 25 C -0.190 4.190 26 C -0.275 4.275 27 C 0.068 3.932 28 H 0.232 0.768 29 H 0.099 0.901 30 H 0.112 0.888 31 H 0.098 0.902 32 H 0.210 0.790 33 H 0.158 0.842 34 H 0.124 0.876 35 H 0.128 0.872 36 H 0.130 0.870 37 H 0.119 0.881 38 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 5.021 -11.668 6.077 14.082 hybrid contribution -0.128 -1.186 -0.524 1.303 sum 4.893 -12.854 5.553 14.833 Atomic orbital electron populations 1.24705 0.95647 1.00106 1.01919 1.23202 0.94404 1.00125 0.99434 1.18221 0.84949 0.85683 1.01320 1.54207 1.65432 1.16250 1.28001 1.19572 1.40590 0.90731 0.88455 0.84836 1.25788 0.95041 0.98295 0.95911 1.69806 1.36715 1.36178 1.01045 0.87033 0.80620 0.82883 0.79919 1.18762 1.20316 1.18048 1.12134 0.74234 0.74398 0.76372 1.93398 1.85717 1.30659 1.85444 1.93367 1.70481 1.62732 1.71462 1.33496 1.32992 1.00698 1.14749 1.22818 0.84236 0.99325 0.83501 1.66896 1.19118 1.16940 1.18353 1.20657 0.85728 0.90452 0.90090 1.89207 1.22790 1.19892 1.76791 1.79922 1.16376 0.87178 1.19676 1.23463 0.90563 0.94678 0.91035 1.20592 1.00784 0.83287 1.08129 1.23107 0.99400 0.99644 0.97330 1.23128 1.03527 0.97875 0.94491 1.21336 0.97154 0.93318 1.15657 1.20850 0.93093 0.95258 0.83971 0.76816 0.90116 0.88841 0.90191 0.79030 0.84234 0.87649 0.87239 0.86964 0.88077 0.82747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.45 19.25 29.55 0.57 -2.88 16 2 C -0.17 -3.25 13.64 -37.12 -0.51 -3.76 16 3 C 0.22 4.26 4.78 -6.83 -0.03 4.22 16 4 N -0.82 -17.29 2.51 -62.77 -0.16 -17.45 16 5 C -0.24 -5.62 9.59 -15.06 -0.14 -5.77 16 6 H 0.13 3.33 7.53 -52.48 -0.40 2.94 16 7 C 0.07 1.56 5.32 -17.43 -0.09 1.46 16 8 N -0.80 -19.26 13.97 55.49 0.78 -18.49 16 9 Si 0.87 17.34 24.93 -169.99 -4.24 13.10 16 10 H -0.26 -4.88 6.68 56.52 0.38 -4.50 16 11 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 12 H -0.26 -4.97 7.11 56.52 0.40 -4.56 16 13 S 2.53 52.54 5.61 -107.50 -0.60 51.94 16 14 O -0.96 -22.30 16.18 -57.17 -0.93 -23.23 16 15 O -0.99 -21.23 16.32 -57.17 -0.93 -22.16 16 16 C -0.74 -13.84 5.99 -39.45 -0.24 -14.08 16 17 C 0.26 4.92 10.66 -17.49 -0.19 4.73 16 18 N -0.49 -9.45 10.38 -12.98 -0.13 -9.59 16 19 C 0.31 5.84 8.64 -16.39 -0.14 5.70 16 20 O -0.08 -1.51 12.05 7.77 0.09 -1.42 16 21 N -0.29 -4.51 12.42 34.88 0.43 -4.07 16 22 C 0.18 2.61 6.99 -80.17 -0.56 2.05 16 23 C -0.11 -1.08 6.31 -91.77 -0.58 -1.66 16 24 C -0.16 -1.25 10.14 -26.73 -0.27 -1.52 16 25 C -0.15 -1.23 10.23 -26.73 -0.27 -1.50 16 26 C -0.27 -4.48 6.34 -105.14 -0.67 -5.15 16 27 C 0.10 1.61 9.69 -39.02 -0.38 1.23 16 28 H 0.21 2.62 7.80 -54.08 -0.42 2.20 16 29 H 0.08 1.53 2.63 -51.93 -0.14 1.39 16 30 H 0.09 1.49 7.62 -51.93 -0.40 1.10 16 31 H 0.29 6.32 8.31 -40.82 -0.34 5.98 16 32 H 0.19 3.27 7.61 -52.49 -0.40 2.87 16 33 H 0.14 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.11 0.94 7.92 -51.93 -0.41 0.53 16 35 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.11 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 38 H 0.15 2.13 7.70 -52.49 -0.40 1.72 16 LS Contribution 352.53 15.07 5.31 5.31 Total: -1.00 -29.56 352.53 -7.29 -36.85 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: -3.41 Total: 6.12 kcal Atomic # 6 Polarization: -13.42 SS G_CDS: -3.50 Total: -16.92 kcal Atomic # 7 Polarization: -50.52 SS G_CDS: 0.92 Total: -49.60 kcal Atomic # 8 Polarization: -45.04 SS G_CDS: -1.76 Total: -46.81 kcal Atomic # 14 Polarization: 17.34 SS G_CDS: -4.24 Total: 13.10 kcal Atomic # 16 Polarization: 52.54 SS G_CDS: -0.60 Total: 51.94 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -29.56 -7.29 -36.85 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491710352.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.738 kcal (2) G-P(sol) polarization free energy of solvation -29.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.847 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds