Wall clock time and date at job start Wed Apr 1 2020 03:56:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17391 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46503 * 109.46863 * 197.62949 * 3 2 1 5 5 C 1.36934 * 119.99986 * 274.79925 * 4 3 2 6 6 H 1.08011 * 119.99636 * 146.42012 * 5 4 3 7 7 C 1.38811 * 120.00093 * 326.42227 * 5 4 3 8 8 N 1.31622 * 119.99670 * 156.59576 * 7 5 4 9 9 Si 1.86792 * 119.99879 * 336.59197 * 7 5 4 10 10 H 1.48495 * 109.47121 * 95.45186 * 9 7 5 11 11 H 1.48501 * 109.47085 * 215.44849 * 9 7 5 12 12 H 1.48497 * 109.47423 * 335.44740 * 9 7 5 13 13 S 1.65603 * 119.99830 * 94.80082 * 4 3 2 14 14 O 1.42102 * 106.40296 * 203.54113 * 13 4 3 15 15 O 1.42101 * 106.40450 * 336.46123 * 13 4 3 16 16 C 1.76198 * 107.21690 * 90.00170 * 13 4 3 17 17 C 1.38642 * 120.30532 * 90.00254 * 16 13 4 18 18 N 1.31634 * 121.51543 * 179.97438 * 17 16 13 19 19 C 1.32502 * 121.69452 * 0.02562 * 18 17 16 20 20 O 1.34797 * 133.15853 * 180.02562 * 19 18 17 21 21 N 1.41324 * 109.44983 * 180.02562 * 20 19 18 22 22 C 1.29760 * 109.75386 * 359.97438 * 21 20 19 23 23 C 1.50699 * 126.34349 * 179.97438 * 22 21 20 24 24 C 1.52999 * 117.49831 * 8.59983 * 23 22 21 25 25 C 1.52996 * 117.50120 * 299.97767 * 23 22 21 26 26 C 1.40556 * 119.94995 * 0.02562 * 19 18 17 27 27 C 1.38188 * 120.30188 * 269.72063 * 16 13 4 28 28 H 4.40642 * 5.51444 * 179.97438 * 4 1 2 29 29 H 1.09001 * 109.47371 * 77.63213 * 3 2 1 30 30 H 1.09003 * 109.47527 * 317.62666 * 3 2 1 31 31 H 0.96998 * 119.99299 * 180.02562 * 8 7 5 32 32 H 1.07998 * 119.23911 * 359.97438 * 17 16 13 33 33 H 1.09004 * 115.54705 * 154.30411 * 23 22 21 34 34 H 1.09005 * 117.49883 * 359.97438 * 24 23 22 35 35 H 1.08998 * 117.50120 * 145.02052 * 24 23 22 36 36 H 1.08999 * 117.50005 * 214.97897 * 25 23 22 37 37 H 1.09000 * 117.49768 * 359.97438 * 25 23 22 38 38 H 1.08002 * 120.97036 * 359.97438 * 27 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1336 1.3173 0.4183 5 6 3.2678 2.3219 -0.5024 6 1 3.0901 3.3472 -0.2127 7 6 3.6323 2.0228 -1.8080 8 7 3.3283 2.8533 -2.7828 9 14 4.5542 0.4417 -2.1813 10 1 3.5890 -0.6079 -2.5958 11 1 5.5253 0.6823 -3.2787 12 1 5.2811 -0.0062 -0.9664 13 16 3.5226 1.5905 2.0047 14 8 3.4162 2.9928 2.2082 15 8 2.7945 0.6371 2.7664 16 6 5.2266 1.1872 2.2007 17 6 6.2009 2.1552 2.0113 18 7 7.4805 1.8803 2.1520 19 6 7.8999 0.6671 2.4805 20 8 9.1229 0.1376 2.6825 21 7 8.9944 -1.2292 3.0181 22 6 7.7402 -1.5616 3.0310 23 6 7.1810 -2.9261 3.3413 24 6 8.1518 -3.9839 3.8699 25 6 7.6112 -4.0870 2.4424 26 6 6.9687 -0.3652 2.6874 27 6 5.6038 -0.0954 2.5503 28 1 -1.0503 -0.0004 -0.0003 29 1 3.0094 -0.2193 -1.0038 30 1 3.0097 -0.7584 0.6926 31 1 3.5827 2.6441 -3.6951 32 1 5.9031 3.1578 1.7422 33 1 6.1619 -2.9398 3.7279 34 1 9.1951 -3.6929 3.9929 35 1 7.7716 -4.6937 4.6045 36 1 6.8753 -4.8647 2.2378 37 1 8.2984 -3.8637 1.6263 38 1 4.8659 -0.8680 2.7089 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491710352.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:56:49 Heat of formation + Delta-G solvation = 93.517254 kcal Electronic energy + Delta-G solvation = -28121.755656 eV Core-core repulsion = 24062.217676 eV Total energy + Delta-G solvation = -4059.537980 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.077 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -43.36942 -40.11967 -38.56432 -38.29143 -38.01970 -36.62310 -35.00434 -34.48032 -33.24533 -33.16158 -31.82721 -28.51449 -26.18291 -26.04268 -25.28135 -24.98756 -23.35975 -21.20412 -20.66246 -20.16689 -19.61588 -19.09391 -18.48675 -18.26253 -18.08911 -17.74623 -17.47094 -16.96581 -16.26428 -16.05981 -15.47570 -15.34987 -15.02941 -14.83538 -14.79328 -14.66754 -14.54463 -14.33209 -13.49370 -13.40006 -13.17034 -13.06602 -13.05567 -12.90817 -12.72643 -12.53252 -12.47881 -12.41389 -12.08666 -11.61497 -11.54193 -11.41387 -11.21972 -10.97581 -10.84328 -10.75062 -10.62552 -10.28425 -8.64880 -6.16360 -0.93538 -0.72400 -0.40153 0.57328 0.66667 1.17705 1.32832 1.37195 1.72647 2.01256 2.03673 2.10255 2.30478 2.47497 2.49831 2.74965 2.81124 2.96510 3.09977 3.31143 3.51735 3.54215 3.64101 3.71249 3.79971 3.90385 4.08817 4.09536 4.17672 4.33407 4.46463 4.50100 4.71052 4.83502 4.90021 4.94509 5.02653 5.16080 5.20749 5.47733 5.65708 6.14335 6.17382 6.81084 6.83600 6.88764 8.46168 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.011700 B = 0.004384 C = 0.004283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2392.493493 B = 6384.755105 C = 6536.037126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.227 4.227 3 C 0.210 3.790 4 N -0.831 5.831 5 C -0.280 4.280 6 H 0.095 0.905 7 C 0.039 3.961 8 N -0.861 5.861 9 Si 0.908 3.092 10 H -0.239 1.239 11 H -0.286 1.286 12 H -0.245 1.245 13 S 2.593 3.407 14 O -0.988 6.988 15 O -0.987 6.987 16 C -0.758 4.758 17 C 0.259 3.741 18 N -0.510 5.510 19 C 0.301 3.699 20 O -0.108 6.108 21 N -0.294 5.294 22 C 0.200 3.800 23 C -0.130 4.130 24 C -0.146 4.146 25 C -0.142 4.142 26 C -0.269 4.269 27 C 0.111 3.889 28 H 0.254 0.746 29 H 0.081 0.919 30 H 0.125 0.875 31 H 0.288 0.712 32 H 0.197 0.803 33 H 0.166 0.834 34 H 0.091 0.909 35 H 0.139 0.861 36 H 0.141 0.859 37 H 0.088 0.912 38 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.009 -16.297 7.254 18.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.230 4.230 3 C 0.086 3.914 4 N -0.656 5.656 5 C -0.425 4.425 6 H 0.113 0.887 7 C -0.173 4.173 8 N -0.497 5.497 9 Si 0.732 3.268 10 H -0.165 1.165 11 H -0.213 1.213 12 H -0.168 1.168 13 S 2.692 3.308 14 O -0.978 6.978 15 O -0.976 6.976 16 C -0.840 4.840 17 C 0.097 3.903 18 N -0.231 5.231 19 C 0.118 3.882 20 O -0.108 6.108 21 N -0.044 5.044 22 C 0.020 3.980 23 C -0.149 4.149 24 C -0.184 4.184 25 C -0.180 4.180 26 C -0.276 4.276 27 C 0.083 3.917 28 H 0.270 0.730 29 H 0.099 0.901 30 H 0.143 0.857 31 H 0.098 0.902 32 H 0.214 0.786 33 H 0.184 0.816 34 H 0.110 0.890 35 H 0.157 0.843 36 H 0.159 0.841 37 H 0.107 0.893 38 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 4.637 -15.675 8.039 18.217 hybrid contribution 0.050 -0.078 -0.769 0.774 sum 4.688 -15.753 7.271 17.972 Atomic orbital electron populations 1.25737 0.96701 0.97762 0.99661 1.23650 0.95359 1.02325 1.01626 1.18553 0.85453 0.85134 1.02243 1.53704 1.67841 1.17180 1.26921 1.18988 1.44153 0.89588 0.89731 0.88705 1.26143 0.95150 1.00710 0.95337 1.69887 1.39638 1.38803 1.01384 0.86420 0.79888 0.80750 0.79773 1.16489 1.21333 1.16834 1.08297 0.74165 0.73413 0.74923 1.93404 1.86442 1.32279 1.85684 1.93399 1.70683 1.62700 1.70849 1.32952 1.30796 1.02283 1.17947 1.22942 0.84326 0.99783 0.83268 1.66864 1.19160 1.17890 1.19217 1.20935 0.86636 0.90849 0.89771 1.89200 1.23008 1.21469 1.77085 1.79972 1.17422 0.85649 1.21309 1.24120 0.89384 0.95704 0.88776 1.21002 1.02355 0.81253 1.10317 1.23230 0.98328 0.98693 0.98112 1.23279 1.03609 0.96968 0.94124 1.21535 0.96879 0.93886 1.15256 1.21246 0.93933 0.94874 0.81607 0.72969 0.90129 0.85733 0.90159 0.78611 0.81635 0.89006 0.84343 0.84076 0.89336 0.79008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.63 19.25 74.32 1.43 -4.20 16 2 C -0.23 -8.37 13.64 31.13 0.42 -7.95 16 3 C 0.21 7.68 4.78 84.57 0.40 8.08 16 4 N -0.83 -35.00 2.51 -352.49 -0.88 -35.88 16 5 C -0.28 -13.60 9.59 84.03 0.81 -12.79 16 6 H 0.10 5.16 7.53 -2.91 -0.02 5.13 16 7 C 0.04 1.88 5.32 84.86 0.45 2.33 16 8 N -0.86 -44.07 13.97 21.65 0.30 -43.76 16 9 Si 0.91 35.67 24.93 68.60 1.71 37.38 16 10 H -0.24 -8.46 6.68 99.48 0.66 -7.79 16 11 H -0.29 -11.52 7.11 99.48 0.71 -10.81 16 12 H -0.25 -8.98 7.11 99.48 0.71 -8.28 16 13 S 2.59 104.30 5.61 -56.49 -0.32 103.98 16 14 O -0.99 -45.95 16.18 -128.00 -2.07 -48.02 16 15 O -0.99 -39.11 16.32 -128.00 -2.09 -41.20 16 16 C -0.76 -26.89 5.99 22.35 0.13 -26.76 16 17 C 0.26 9.59 10.66 84.82 0.90 10.49 16 18 N -0.51 -19.46 10.38 -308.20 -3.20 -22.66 16 19 C 0.30 10.91 8.64 85.16 0.74 11.64 16 20 O -0.11 -3.87 12.05 30.18 0.36 -3.50 16 21 N -0.29 -8.76 12.42 -43.55 -0.54 -9.30 16 22 C 0.20 5.10 6.99 45.00 0.31 5.42 16 23 C -0.13 -1.99 6.31 -11.54 -0.07 -2.07 16 24 C -0.15 -1.68 10.14 30.59 0.31 -1.37 16 25 C -0.14 -1.64 10.23 30.59 0.31 -1.33 16 26 C -0.27 -8.27 6.34 -20.20 -0.13 -8.40 16 27 C 0.11 3.31 9.69 22.64 0.22 3.53 16 28 H 0.25 5.26 7.80 -4.40 -0.03 5.23 16 29 H 0.08 2.93 2.63 -2.39 -0.01 2.93 16 30 H 0.12 3.56 7.62 -2.39 -0.02 3.54 16 31 H 0.29 13.56 8.31 -92.71 -0.77 12.79 16 32 H 0.20 6.87 7.61 -2.91 -0.02 6.85 16 33 H 0.17 1.70 8.14 -2.38 -0.02 1.68 16 34 H 0.09 1.35 7.92 -2.38 -0.02 1.33 16 35 H 0.14 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.14 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.19 4.21 7.70 -2.91 -0.02 4.19 16 Total: -1.00 -67.22 352.53 0.61 -66.61 By element: Atomic # 1 Polarization: 18.63 SS G_CDS: 1.09 Total: 19.71 kcal Atomic # 6 Polarization: -29.61 SS G_CDS: 6.25 Total: -23.37 kcal Atomic # 7 Polarization: -107.28 SS G_CDS: -4.32 Total: -111.60 kcal Atomic # 8 Polarization: -88.93 SS G_CDS: -3.80 Total: -92.72 kcal Atomic # 14 Polarization: 35.67 SS G_CDS: 1.71 Total: 37.38 kcal Atomic # 16 Polarization: 104.30 SS G_CDS: -0.32 Total: 103.98 kcal Total: -67.22 0.61 -66.61 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491710352.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.131 kcal (2) G-P(sol) polarization free energy of solvation -67.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.614 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds