Wall clock time and date at job start Wed Apr 1 2020 04:12:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34230 * 117.00177 * 2 1 4 4 O 1.20823 * 119.99689 * 359.97438 * 3 2 1 5 5 C 1.50695 * 120.00116 * 179.97438 * 3 2 1 6 6 N 1.46498 * 109.47148 * 179.97438 * 5 3 2 7 7 C 1.36853 * 119.99885 * 269.99707 * 6 5 3 8 8 H 1.08002 * 120.00051 * 130.84390 * 7 6 5 9 9 C 1.39017 * 120.00461 * 310.84210 * 7 6 5 10 10 N 1.31386 * 120.00576 * 172.90744 * 9 7 6 11 11 Si 1.86802 * 119.99687 * 352.91140 * 9 7 6 12 12 H 1.48497 * 109.47371 * 94.97131 * 11 9 7 13 13 H 1.48500 * 109.47398 * 214.97399 * 11 9 7 14 14 H 1.48499 * 109.47160 * 334.97026 * 11 9 7 15 15 C 1.34781 * 120.00265 * 89.99928 * 6 5 3 16 16 O 1.21756 * 119.99799 * 3.98698 * 15 6 5 17 17 C 1.46446 * 120.00051 * 183.99035 * 15 6 5 18 18 C 1.37032 * 126.12595 * 173.74220 * 17 15 6 19 19 N 1.30600 * 114.00804 * 179.70664 * 18 17 15 20 20 C 1.30351 * 117.31553 * 0.50845 * 19 18 17 21 21 C 1.47772 * 124.74158 * 179.76328 * 20 19 18 22 22 C 1.40042 * 120.56175 * 359.70506 * 21 20 19 23 23 C 1.38346 * 118.28798 * 179.97438 * 22 21 20 24 24 C 1.38359 * 119.30831 * 0.02562 * 23 22 21 25 25 N 1.31922 * 121.08680 * 0.02562 * 24 23 22 26 26 C 1.31697 * 121.88401 * 359.66227 * 25 24 23 27 27 S 1.70919 * 110.51886 * 359.50817 * 20 19 18 28 28 H 1.09006 * 109.47592 * 180.02562 * 1 2 3 29 29 H 1.08992 * 109.47660 * 300.00288 * 1 2 3 30 30 H 1.09001 * 109.46812 * 60.00425 * 1 2 3 31 31 H 1.08995 * 109.47442 * 59.99563 * 5 3 2 32 32 H 1.09004 * 109.47147 * 299.99223 * 5 3 2 33 33 H 0.96997 * 120.00411 * 184.99901 * 10 9 7 34 34 H 1.08001 * 122.99588 * 359.96851 * 18 17 15 35 35 H 1.08002 * 120.85600 * 0.02562 * 22 21 20 36 36 H 1.07997 * 120.34185 * 180.02562 * 23 22 21 37 37 H 1.08000 * 119.45417 * 179.97438 * 24 23 22 38 38 H 1.07997 * 119.72162 * 180.33400 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5662 1.2748 0.0006 6 7 3.9816 2.6797 -0.0002 7 6 4.1762 3.3351 -1.1857 8 1 3.7245 4.3025 -1.3484 9 6 4.9553 2.7556 -2.1806 10 7 5.0293 3.3156 -3.3669 11 14 5.8969 1.1806 -1.8310 12 1 5.0921 0.0140 -2.2743 13 1 7.1864 1.2009 -2.5672 14 1 6.1607 1.0748 -0.3735 15 6 4.1722 3.3267 1.1667 16 8 4.0701 2.7250 2.2202 17 6 4.5021 4.7536 1.1674 18 6 4.6032 5.5589 2.2715 19 7 4.9167 6.7971 1.9992 20 6 5.0807 7.1105 0.7446 21 6 5.4311 8.4591 0.2524 22 6 5.6075 9.5206 1.1486 23 6 5.9354 10.7633 0.6366 24 6 6.0767 10.9165 -0.7312 25 7 5.9035 9.8985 -1.5521 26 6 5.5966 8.6953 -1.1132 27 16 4.8409 5.7422 -0.2511 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 3.9564 0.7805 -0.8890 32 1 3.9556 0.7810 0.8909 33 1 5.5133 2.8743 -4.0822 34 1 4.4422 5.2005 3.2776 35 1 5.4914 9.3728 2.2121 36 1 6.0795 11.6050 1.2977 37 1 6.3322 11.8857 -1.1335 38 1 5.4681 7.8855 -1.8161 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000535602852.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:12:42 Heat of formation + Delta-G solvation = -19.592115 kcal Electronic energy + Delta-G solvation = -27335.155254 eV Core-core repulsion = 23270.712484 eV Total energy + Delta-G solvation = -4064.442770 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.077 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.21688 -40.05164 -39.14932 -38.29381 -36.06851 -35.13788 -32.90095 -32.47560 -31.82345 -29.96348 -28.48973 -26.77194 -25.87187 -24.90687 -23.58658 -22.68387 -21.50151 -20.26074 -19.13786 -18.36424 -17.62498 -17.27174 -16.87474 -16.54599 -16.02622 -15.84263 -15.65726 -15.41599 -14.85274 -14.61188 -14.47409 -14.02201 -13.73488 -13.41117 -13.35729 -13.34311 -13.00888 -12.97809 -12.72791 -12.40154 -12.05654 -11.91431 -11.76343 -11.43760 -10.94967 -10.69513 -10.48600 -10.40199 -10.07647 -10.01846 -9.79666 -9.50161 -9.44931 -9.20874 -8.89971 -8.66049 -8.24906 -7.82038 -6.86827 -4.73451 0.38092 1.26913 1.56226 1.99247 2.47293 2.67166 2.79849 2.85729 2.98351 3.00143 3.20467 3.72445 3.87780 3.97401 4.03902 4.28373 4.54771 4.59121 4.89413 5.00281 5.08837 5.23323 5.29898 5.30645 5.33781 5.44244 5.60977 5.67556 5.67843 5.71987 5.82541 5.95545 6.13237 6.26974 6.62524 6.68574 6.73139 6.87090 7.57367 7.68281 7.96006 8.21059 8.22271 8.43001 8.77099 9.13957 10.14787 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.014544 B = 0.003556 C = 0.003213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1924.762341 B = 7871.915328 C = 8712.571852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.367 6.367 3 C 0.449 3.551 4 O -0.488 6.488 5 C 0.114 3.886 6 N -0.449 5.449 7 C -0.350 4.350 8 H 0.117 0.883 9 C 0.081 3.919 10 N -0.830 5.830 11 Si 0.873 3.127 12 H -0.262 1.262 13 H -0.274 1.274 14 H -0.251 1.251 15 C 0.574 3.426 16 O -0.574 6.574 17 C -0.270 4.270 18 C 0.089 3.911 19 N -0.483 5.483 20 C -0.039 4.039 21 C -0.055 4.055 22 C -0.042 4.042 23 C -0.176 4.176 24 C 0.094 3.906 25 N -0.479 5.479 26 C 0.116 3.884 27 S 0.347 5.653 28 H 0.096 0.904 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.105 0.895 32 H 0.119 0.881 33 H 0.287 0.713 34 H 0.177 0.823 35 H 0.143 0.857 36 H 0.136 0.864 37 H 0.156 0.844 38 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.064 3.383 2.667 4.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.284 6.284 3 C 0.289 3.711 4 O -0.373 6.373 5 C -0.011 4.011 6 N -0.170 5.170 7 C -0.483 4.483 8 H 0.133 0.867 9 C -0.133 4.133 10 N -0.460 5.460 11 Si 0.698 3.302 12 H -0.188 1.188 13 H -0.200 1.200 14 H -0.174 1.174 15 C 0.364 3.636 16 O -0.459 6.459 17 C -0.395 4.395 18 C -0.073 4.073 19 N -0.198 5.198 20 C -0.305 4.305 21 C -0.059 4.059 22 C -0.072 4.072 23 C -0.196 4.196 24 C -0.063 4.063 25 N -0.187 5.187 26 C -0.044 4.044 27 S 0.615 5.385 28 H 0.114 0.886 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.122 0.878 32 H 0.136 0.864 33 H 0.098 0.902 34 H 0.194 0.806 35 H 0.161 0.839 36 H 0.154 0.846 37 H 0.173 0.827 38 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 0.149 3.898 1.356 4.130 hybrid contribution -0.196 -1.201 1.747 2.129 sum -0.048 2.697 3.104 4.112 Atomic orbital electron populations 1.23161 0.77247 1.02996 1.02357 1.86509 1.22862 1.34223 1.84840 1.24595 0.92702 0.81333 0.72448 1.90636 1.66564 1.36254 1.43808 1.21290 0.86993 0.87657 1.05159 1.43094 1.59062 1.08763 1.06120 1.18967 1.32185 1.05040 0.92127 0.86687 1.25556 0.94335 0.98517 0.94912 1.69581 1.37223 1.37934 1.01307 0.86887 0.80453 0.82086 0.80813 1.18814 1.19967 1.17409 1.16991 0.78279 0.84703 0.83583 1.90715 1.56282 1.67513 1.31364 1.26011 1.16145 0.99819 0.97566 1.22095 0.99020 0.86768 0.99432 1.66296 1.15809 1.18731 1.18938 1.26363 1.06152 1.01594 0.96432 1.19024 1.01567 0.90957 0.94401 1.21774 0.93228 0.91280 1.00870 1.22102 1.02402 0.98096 0.96976 1.22841 0.95575 0.97783 0.90144 1.67682 1.11868 0.99612 1.39523 1.22961 0.94264 0.94750 0.92440 1.85594 1.54762 0.93581 1.04538 0.88576 0.92246 0.92102 0.87763 0.86351 0.90234 0.80593 0.83918 0.84629 0.82718 0.82198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.48 10.56 101.05 1.07 1.55 16 2 O -0.37 -6.28 10.56 -39.26 -0.41 -6.70 16 3 C 0.45 9.16 8.02 36.00 0.29 9.45 16 4 O -0.49 -11.32 16.18 -18.75 -0.30 -11.62 16 5 C 0.11 2.33 4.56 -5.20 -0.02 2.31 16 6 N -0.45 -10.28 1.53 -117.67 -0.18 -10.46 16 7 C -0.35 -8.22 7.45 -15.02 -0.11 -8.33 16 8 H 0.12 2.85 5.50 -31.75 -0.17 2.68 16 9 C 0.08 1.86 5.46 -17.45 -0.10 1.76 16 10 N -0.83 -19.69 13.95 55.50 0.77 -18.91 16 11 Si 0.87 17.51 24.76 -169.99 -4.21 13.30 16 12 H -0.26 -4.95 6.93 56.52 0.39 -4.56 16 13 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 14 H -0.25 -5.04 6.87 56.52 0.39 -4.66 16 15 C 0.57 13.36 7.60 -12.95 -0.10 13.26 16 16 O -0.57 -13.97 16.44 5.14 0.08 -13.89 16 17 C -0.27 -5.78 6.35 -36.72 -0.23 -6.01 16 18 C 0.09 1.75 11.16 -18.51 -0.21 1.55 16 19 N -0.48 -9.19 10.11 -11.98 -0.12 -9.31 16 20 C -0.04 -0.71 7.14 -14.28 -0.10 -0.81 16 21 C -0.05 -0.88 5.89 -104.83 -0.62 -1.49 16 22 C -0.04 -0.58 9.80 -38.87 -0.38 -0.96 16 23 C -0.18 -1.94 10.10 -39.50 -0.40 -2.34 16 24 C 0.09 1.10 11.17 -17.47 -0.20 0.91 16 25 N -0.48 -7.04 10.35 -12.90 -0.13 -7.18 16 26 C 0.12 1.80 10.74 -17.11 -0.18 1.62 16 27 S 0.35 6.79 17.37 -107.50 -1.87 4.93 16 28 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.06 0.78 8.13 -51.93 -0.42 0.36 16 30 H 0.06 0.80 8.13 -51.93 -0.42 0.38 16 31 H 0.10 2.03 3.73 -51.93 -0.19 1.84 16 32 H 0.12 2.25 7.37 -51.93 -0.38 1.86 16 33 H 0.29 6.30 8.32 -40.82 -0.34 5.96 16 34 H 0.18 3.19 8.06 -52.49 -0.42 2.77 16 35 H 0.14 1.88 7.87 -52.49 -0.41 1.47 16 36 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 37 H 0.16 1.28 8.06 -52.49 -0.42 0.86 16 38 H 0.16 2.43 7.24 -52.49 -0.38 2.05 16 LS Contribution 346.74 15.07 5.23 5.23 Total: -1.00 -29.45 346.74 -5.67 -35.12 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: -3.24 Total: 7.04 kcal Atomic # 6 Polarization: 13.74 SS G_CDS: -1.29 Total: 12.45 kcal Atomic # 7 Polarization: -46.20 SS G_CDS: 0.34 Total: -45.86 kcal Atomic # 8 Polarization: -31.57 SS G_CDS: -0.63 Total: -32.21 kcal Atomic # 14 Polarization: 17.51 SS G_CDS: -4.21 Total: 13.30 kcal Atomic # 16 Polarization: 6.79 SS G_CDS: -1.87 Total: 4.93 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -29.45 -5.67 -35.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000535602852.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.529 kcal (2) G-P(sol) polarization free energy of solvation -29.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds