Wall clock time and date at job start Wed Apr 1 2020 04:12:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34230 * 117.00177 * 2 1 4 4 O 1.20823 * 119.99689 * 359.97438 * 3 2 1 5 5 C 1.50695 * 120.00116 * 179.97438 * 3 2 1 6 6 N 1.46498 * 109.47148 * 179.97438 * 5 3 2 7 7 C 1.36853 * 119.99885 * 269.99707 * 6 5 3 8 8 H 1.08002 * 120.00051 * 130.84390 * 7 6 5 9 9 C 1.39017 * 120.00461 * 310.84210 * 7 6 5 10 10 N 1.31386 * 120.00576 * 172.90744 * 9 7 6 11 11 Si 1.86802 * 119.99687 * 352.91140 * 9 7 6 12 12 H 1.48497 * 109.47371 * 94.97131 * 11 9 7 13 13 H 1.48500 * 109.47398 * 214.97399 * 11 9 7 14 14 H 1.48499 * 109.47160 * 334.97026 * 11 9 7 15 15 C 1.34781 * 120.00265 * 89.99928 * 6 5 3 16 16 O 1.21756 * 119.99799 * 3.98698 * 15 6 5 17 17 C 1.46446 * 120.00051 * 183.99035 * 15 6 5 18 18 C 1.37032 * 126.12595 * 173.74220 * 17 15 6 19 19 N 1.30600 * 114.00804 * 179.70664 * 18 17 15 20 20 C 1.30351 * 117.31553 * 0.50845 * 19 18 17 21 21 C 1.47772 * 124.74158 * 179.76328 * 20 19 18 22 22 C 1.40042 * 120.56175 * 359.70506 * 21 20 19 23 23 C 1.38346 * 118.28798 * 179.97438 * 22 21 20 24 24 C 1.38359 * 119.30831 * 0.02562 * 23 22 21 25 25 N 1.31922 * 121.08680 * 0.02562 * 24 23 22 26 26 C 1.31697 * 121.88401 * 359.66227 * 25 24 23 27 27 S 1.70919 * 110.51886 * 359.50817 * 20 19 18 28 28 H 1.09006 * 109.47592 * 180.02562 * 1 2 3 29 29 H 1.08992 * 109.47660 * 300.00288 * 1 2 3 30 30 H 1.09001 * 109.46812 * 60.00425 * 1 2 3 31 31 H 1.08995 * 109.47442 * 59.99563 * 5 3 2 32 32 H 1.09004 * 109.47147 * 299.99223 * 5 3 2 33 33 H 0.96997 * 120.00411 * 184.99901 * 10 9 7 34 34 H 1.08001 * 122.99588 * 359.96851 * 18 17 15 35 35 H 1.08002 * 120.85600 * 0.02562 * 22 21 20 36 36 H 1.07997 * 120.34185 * 180.02562 * 23 22 21 37 37 H 1.08000 * 119.45417 * 179.97438 * 24 23 22 38 38 H 1.07997 * 119.72162 * 180.33400 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5662 1.2748 0.0006 6 7 3.9816 2.6797 -0.0002 7 6 4.1762 3.3351 -1.1857 8 1 3.7245 4.3025 -1.3484 9 6 4.9553 2.7556 -2.1806 10 7 5.0293 3.3156 -3.3669 11 14 5.8969 1.1806 -1.8310 12 1 5.0921 0.0140 -2.2743 13 1 7.1864 1.2009 -2.5672 14 1 6.1607 1.0748 -0.3735 15 6 4.1722 3.3267 1.1667 16 8 4.0701 2.7250 2.2202 17 6 4.5021 4.7536 1.1674 18 6 4.6032 5.5589 2.2715 19 7 4.9167 6.7971 1.9992 20 6 5.0807 7.1105 0.7446 21 6 5.4311 8.4591 0.2524 22 6 5.6075 9.5206 1.1486 23 6 5.9354 10.7633 0.6366 24 6 6.0767 10.9165 -0.7312 25 7 5.9035 9.8985 -1.5521 26 6 5.5966 8.6953 -1.1132 27 16 4.8409 5.7422 -0.2511 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 3.9564 0.7805 -0.8890 32 1 3.9556 0.7810 0.8909 33 1 5.5133 2.8743 -4.0822 34 1 4.4422 5.2005 3.2776 35 1 5.4914 9.3728 2.2121 36 1 6.0795 11.6050 1.2977 37 1 6.3322 11.8857 -1.1335 38 1 5.4681 7.8855 -1.8161 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000535602852.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:12:41 Heat of formation + Delta-G solvation = -38.257574 kcal Electronic energy + Delta-G solvation = -27335.964649 eV Core-core repulsion = 23270.712484 eV Total energy + Delta-G solvation = -4065.252166 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.077 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.81274 -41.22070 -40.70170 -39.83427 -37.62629 -36.86684 -34.24325 -34.10361 -32.90544 -31.48433 -29.92836 -28.05374 -27.46136 -26.45296 -24.72896 -23.92148 -23.02101 -21.87680 -20.74360 -19.85194 -19.20797 -18.84111 -18.06685 -17.91843 -17.48989 -17.27913 -17.22444 -16.71773 -16.35636 -16.18595 -15.93412 -15.40961 -15.21645 -14.83988 -14.65731 -14.61583 -14.51143 -14.31354 -14.05220 -14.00604 -13.59565 -13.14627 -13.00202 -12.98549 -12.56281 -12.25215 -12.01768 -11.84163 -11.72468 -11.47083 -11.26899 -10.94485 -10.58616 -10.54267 -10.46249 -10.22313 -9.94537 -9.27785 -8.60474 -6.53184 -1.00624 0.18383 0.31227 0.45021 0.93659 1.07789 1.21082 1.31795 1.38363 1.43874 1.71882 2.07704 2.24652 2.38157 2.80965 2.85790 2.95954 3.51376 3.77370 3.83155 3.86396 3.96930 3.98344 4.01950 4.17557 4.21248 4.29446 4.29856 4.38867 4.55305 4.64256 4.72264 5.05121 5.13495 5.19892 5.23400 5.25831 5.66107 5.82196 5.89324 6.65169 6.66608 6.68973 6.90230 7.00904 7.38874 8.43696 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.014544 B = 0.003556 C = 0.003213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1924.762341 B = 7871.915328 C = 8712.571852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.362 6.362 3 C 0.453 3.547 4 O -0.524 6.524 5 C 0.106 3.894 6 N -0.455 5.455 7 C -0.359 4.359 8 H 0.096 0.904 9 C 0.052 3.948 10 N -0.861 5.861 11 Si 0.911 3.089 12 H -0.239 1.239 13 H -0.271 1.271 14 H -0.253 1.253 15 C 0.567 3.433 16 O -0.595 6.595 17 C -0.308 4.308 18 C 0.101 3.899 19 N -0.491 5.491 20 C -0.012 4.012 21 C -0.087 4.087 22 C -0.044 4.044 23 C -0.158 4.158 24 C 0.103 3.897 25 N -0.501 5.501 26 C 0.109 3.891 27 S 0.333 5.667 28 H 0.142 0.858 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.115 0.885 32 H 0.132 0.868 33 H 0.292 0.708 34 H 0.190 0.810 35 H 0.148 0.852 36 H 0.180 0.820 37 H 0.197 0.803 38 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.610 4.574 3.212 5.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.278 6.278 3 C 0.295 3.705 4 O -0.412 6.412 5 C -0.019 4.019 6 N -0.176 5.176 7 C -0.492 4.492 8 H 0.112 0.888 9 C -0.159 4.159 10 N -0.493 5.493 11 Si 0.733 3.267 12 H -0.163 1.163 13 H -0.197 1.197 14 H -0.177 1.177 15 C 0.358 3.642 16 O -0.482 6.482 17 C -0.433 4.433 18 C -0.062 4.062 19 N -0.206 5.206 20 C -0.279 4.279 21 C -0.092 4.092 22 C -0.073 4.073 23 C -0.178 4.178 24 C -0.054 4.054 25 N -0.209 5.209 26 C -0.050 4.050 27 S 0.601 5.399 28 H 0.159 0.841 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.133 0.867 32 H 0.150 0.850 33 H 0.103 0.897 34 H 0.207 0.793 35 H 0.166 0.834 36 H 0.198 0.802 37 H 0.213 0.787 38 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 0.671 5.025 1.873 5.404 hybrid contribution -0.393 -1.278 1.607 2.090 sum 0.279 3.747 3.479 5.121 Atomic orbital electron populations 1.23571 0.74747 1.05947 1.02243 1.86484 1.25181 1.32107 1.83998 1.24507 0.92718 0.81705 0.71602 1.90619 1.67286 1.37607 1.45722 1.21448 0.87533 0.86662 1.06234 1.43139 1.59146 1.09578 1.05712 1.18853 1.32689 1.05099 0.92537 0.88767 1.26023 0.94534 1.00852 0.94468 1.69635 1.38305 1.39312 1.02044 0.86288 0.79802 0.80115 0.80479 1.16316 1.19678 1.17712 1.17270 0.77962 0.85442 0.83505 1.90668 1.57485 1.68207 1.31802 1.25960 1.19043 0.99651 0.98683 1.22361 0.97412 0.86747 0.99666 1.66389 1.16968 1.18254 1.18987 1.26664 1.03300 1.02229 0.95708 1.19058 1.04536 0.90460 0.95171 1.21988 0.92730 0.91710 1.00834 1.22536 0.99850 0.98063 0.97318 1.23622 0.92970 0.98362 0.90458 1.67732 1.12748 0.99823 1.40617 1.22857 0.94740 0.95305 0.92143 1.85564 1.55576 0.94150 1.04624 0.84051 0.92375 0.92324 0.86744 0.85037 0.89742 0.79329 0.83413 0.80220 0.78655 0.83202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.69 10.56 113.37 1.20 1.89 16 2 O -0.36 -11.98 10.56 -51.42 -0.54 -12.52 16 3 C 0.45 18.59 8.02 71.23 0.57 19.16 16 4 O -0.52 -24.95 16.18 21.97 0.36 -24.60 16 5 C 0.11 4.34 4.56 85.63 0.39 4.73 16 6 N -0.46 -21.38 1.53 -644.38 -0.98 -22.37 16 7 C -0.36 -17.52 7.45 84.10 0.63 -16.89 16 8 H 0.10 4.96 5.50 -16.10 -0.09 4.87 16 9 C 0.05 2.46 5.46 84.95 0.46 2.92 16 10 N -0.86 -41.92 13.95 21.68 0.30 -41.62 16 11 Si 0.91 35.61 24.76 68.60 1.70 37.31 16 12 H -0.24 -8.38 6.93 99.48 0.69 -7.69 16 13 H -0.27 -10.42 7.11 99.48 0.71 -9.72 16 14 H -0.25 -9.98 6.87 99.48 0.68 -9.30 16 15 C 0.57 27.24 7.60 86.38 0.66 27.90 16 16 O -0.60 -29.65 16.44 -4.53 -0.07 -29.72 16 17 C -0.31 -13.67 6.35 24.13 0.15 -13.52 16 18 C 0.10 4.04 11.16 84.59 0.94 4.98 16 19 N -0.49 -18.71 10.11 -191.83 -1.94 -20.65 16 20 C -0.01 -0.43 7.14 87.44 0.62 0.19 16 21 C -0.09 -2.74 5.89 -20.00 -0.12 -2.86 16 22 C -0.04 -1.09 9.80 22.73 0.22 -0.87 16 23 C -0.16 -2.83 10.10 22.32 0.23 -2.60 16 24 C 0.10 2.03 11.17 84.71 0.95 2.97 16 25 N -0.50 -13.85 10.35 -194.71 -2.01 -15.87 16 26 C 0.11 3.37 10.74 85.03 0.91 4.29 16 27 S 0.33 13.62 17.37 -56.49 -0.98 12.64 16 28 H 0.14 2.21 8.14 -2.38 -0.02 2.19 16 29 H 0.06 1.47 8.13 -2.39 -0.02 1.45 16 30 H 0.06 1.49 8.13 -2.39 -0.02 1.47 16 31 H 0.12 4.40 3.73 -2.39 -0.01 4.39 16 32 H 0.13 4.98 7.37 -2.39 -0.02 4.97 16 33 H 0.29 13.07 8.32 -92.71 -0.77 12.30 16 34 H 0.19 6.90 8.06 -2.91 -0.02 6.87 16 35 H 0.15 3.54 7.87 -2.91 -0.02 3.51 16 36 H 0.18 1.67 8.06 -2.91 -0.02 1.65 16 37 H 0.20 2.18 8.06 -2.91 -0.02 2.16 16 38 H 0.15 4.77 7.24 -2.91 -0.02 4.75 16 Total: -1.00 -65.88 346.74 4.66 -61.22 By element: Atomic # 1 Polarization: 22.85 SS G_CDS: 1.02 Total: 23.87 kcal Atomic # 6 Polarization: 24.48 SS G_CDS: 7.82 Total: 32.29 kcal Atomic # 7 Polarization: -95.86 SS G_CDS: -4.64 Total: -100.50 kcal Atomic # 8 Polarization: -66.58 SS G_CDS: -0.26 Total: -66.85 kcal Atomic # 14 Polarization: 35.61 SS G_CDS: 1.70 Total: 37.31 kcal Atomic # 16 Polarization: 13.62 SS G_CDS: -0.98 Total: 12.64 kcal Total: -65.88 4.66 -61.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000535602852.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.967 kcal (2) G-P(sol) polarization free energy of solvation -65.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds