Wall clock time and date at job start Wed Apr 1 2020 04:12:41
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.45194 * 1
3 3 C 1.34230 * 117.00177 * 2 1
4 4 O 1.20823 * 119.99689 * 359.97438 * 3 2 1
5 5 C 1.50695 * 120.00116 * 179.97438 * 3 2 1
6 6 N 1.46498 * 109.47148 * 179.97438 * 5 3 2
7 7 C 1.36853 * 119.99885 * 269.99707 * 6 5 3
8 8 H 1.08002 * 120.00051 * 130.84390 * 7 6 5
9 9 C 1.39017 * 120.00461 * 310.84210 * 7 6 5
10 10 N 1.31386 * 120.00576 * 172.90744 * 9 7 6
11 11 Si 1.86802 * 119.99687 * 352.91140 * 9 7 6
12 12 H 1.48497 * 109.47371 * 94.97131 * 11 9 7
13 13 H 1.48500 * 109.47398 * 214.97399 * 11 9 7
14 14 H 1.48499 * 109.47160 * 334.97026 * 11 9 7
15 15 C 1.34781 * 120.00265 * 89.99928 * 6 5 3
16 16 O 1.21756 * 119.99799 * 3.98698 * 15 6 5
17 17 C 1.46446 * 120.00051 * 183.99035 * 15 6 5
18 18 C 1.37032 * 126.12595 * 173.74220 * 17 15 6
19 19 N 1.30600 * 114.00804 * 179.70664 * 18 17 15
20 20 C 1.30351 * 117.31553 * 0.50845 * 19 18 17
21 21 C 1.47772 * 124.74158 * 179.76328 * 20 19 18
22 22 C 1.40042 * 120.56175 * 359.70506 * 21 20 19
23 23 C 1.38346 * 118.28798 * 179.97438 * 22 21 20
24 24 C 1.38359 * 119.30831 * 0.02562 * 23 22 21
25 25 N 1.31922 * 121.08680 * 0.02562 * 24 23 22
26 26 C 1.31697 * 121.88401 * 359.66227 * 25 24 23
27 27 S 1.70919 * 110.51886 * 359.50817 * 20 19 18
28 28 H 1.09006 * 109.47592 * 180.02562 * 1 2 3
29 29 H 1.08992 * 109.47660 * 300.00288 * 1 2 3
30 30 H 1.09001 * 109.46812 * 60.00425 * 1 2 3
31 31 H 1.08995 * 109.47442 * 59.99563 * 5 3 2
32 32 H 1.09004 * 109.47147 * 299.99223 * 5 3 2
33 33 H 0.96997 * 120.00411 * 184.99901 * 10 9 7
34 34 H 1.08001 * 122.99588 * 359.96851 * 18 17 15
35 35 H 1.08002 * 120.85600 * 0.02562 * 22 21 20
36 36 H 1.07997 * 120.34185 * 180.02562 * 23 22 21
37 37 H 1.08000 * 119.45417 * 179.97438 * 24 23 22
38 38 H 1.07997 * 119.72162 * 180.33400 * 26 25 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4519 0.0000 0.0000
3 6 2.0614 1.1960 0.0000
4 8 1.4033 2.2093 -0.0005
5 6 3.5662 1.2748 0.0006
6 7 3.9816 2.6797 -0.0002
7 6 4.1762 3.3351 -1.1857
8 1 3.7245 4.3025 -1.3484
9 6 4.9553 2.7556 -2.1806
10 7 5.0293 3.3156 -3.3669
11 14 5.8969 1.1806 -1.8310
12 1 5.0921 0.0140 -2.2743
13 1 7.1864 1.2009 -2.5672
14 1 6.1607 1.0748 -0.3735
15 6 4.1722 3.3267 1.1667
16 8 4.0701 2.7250 2.2202
17 6 4.5021 4.7536 1.1674
18 6 4.6032 5.5589 2.2715
19 7 4.9167 6.7971 1.9992
20 6 5.0807 7.1105 0.7446
21 6 5.4311 8.4591 0.2524
22 6 5.6075 9.5206 1.1486
23 6 5.9354 10.7633 0.6366
24 6 6.0767 10.9165 -0.7312
25 7 5.9035 9.8985 -1.5521
26 6 5.5966 8.6953 -1.1132
27 16 4.8409 5.7422 -0.2511
28 1 -0.3634 -1.0277 0.0005
29 1 -0.3634 0.5138 0.8899
30 1 -0.3633 0.5138 -0.8900
31 1 3.9564 0.7805 -0.8890
32 1 3.9556 0.7810 0.8909
33 1 5.5133 2.8743 -4.0822
34 1 4.4422 5.2005 3.2776
35 1 5.4914 9.3728 2.2121
36 1 6.0795 11.6050 1.2977
37 1 6.3322 11.8857 -1.1335
38 1 5.4681 7.8855 -1.8161
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000535602852.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:12:41
Heat of formation + Delta-G solvation = -38.257574 kcal
Electronic energy + Delta-G solvation = -27335.964649 eV
Core-core repulsion = 23270.712484 eV
Total energy + Delta-G solvation = -4065.252166 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 347.077 amu
Computer time = 0.68 seconds
Orbital eigenvalues (eV)
-41.81274 -41.22070 -40.70170 -39.83427 -37.62629 -36.86684 -34.24325 -34.10361
-32.90544 -31.48433 -29.92836 -28.05374 -27.46136 -26.45296 -24.72896 -23.92148
-23.02101 -21.87680 -20.74360 -19.85194 -19.20797 -18.84111 -18.06685 -17.91843
-17.48989 -17.27913 -17.22444 -16.71773 -16.35636 -16.18595 -15.93412 -15.40961
-15.21645 -14.83988 -14.65731 -14.61583 -14.51143 -14.31354 -14.05220 -14.00604
-13.59565 -13.14627 -13.00202 -12.98549 -12.56281 -12.25215 -12.01768 -11.84163
-11.72468 -11.47083 -11.26899 -10.94485 -10.58616 -10.54267 -10.46249 -10.22313
-9.94537 -9.27785 -8.60474 -6.53184 -1.00624 0.18383 0.31227 0.45021
0.93659 1.07789 1.21082 1.31795 1.38363 1.43874 1.71882 2.07704
2.24652 2.38157 2.80965 2.85790 2.95954 3.51376 3.77370 3.83155
3.86396 3.96930 3.98344 4.01950 4.17557 4.21248 4.29446 4.29856
4.38867 4.55305 4.64256 4.72264 5.05121 5.13495 5.19892 5.23400
5.25831 5.66107 5.82196 5.89324 6.65169 6.66608 6.68973 6.90230
7.00904 7.38874 8.43696
Molecular weight = 347.08amu
Principal moments of inertia in cm(-1)
A = 0.014544 B = 0.003556 C = 0.003213
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1924.762341 B = 7871.915328 C = 8712.571852
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.028 3.972
2 O -0.362 6.362
3 C 0.453 3.547
4 O -0.524 6.524
5 C 0.106 3.894
6 N -0.455 5.455
7 C -0.359 4.359
8 H 0.096 0.904
9 C 0.052 3.948
10 N -0.861 5.861
11 Si 0.911 3.089
12 H -0.239 1.239
13 H -0.271 1.271
14 H -0.253 1.253
15 C 0.567 3.433
16 O -0.595 6.595
17 C -0.308 4.308
18 C 0.101 3.899
19 N -0.491 5.491
20 C -0.012 4.012
21 C -0.087 4.087
22 C -0.044 4.044
23 C -0.158 4.158
24 C 0.103 3.897
25 N -0.501 5.501
26 C 0.109 3.891
27 S 0.333 5.667
28 H 0.142 0.858
29 H 0.057 0.943
30 H 0.058 0.942
31 H 0.115 0.885
32 H 0.132 0.868
33 H 0.292 0.708
34 H 0.190 0.810
35 H 0.148 0.852
36 H 0.180 0.820
37 H 0.197 0.803
38 H 0.151 0.849
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.610 4.574 3.212 5.622
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.065 4.065
2 O -0.278 6.278
3 C 0.295 3.705
4 O -0.412 6.412
5 C -0.019 4.019
6 N -0.176 5.176
7 C -0.492 4.492
8 H 0.112 0.888
9 C -0.159 4.159
10 N -0.493 5.493
11 Si 0.733 3.267
12 H -0.163 1.163
13 H -0.197 1.197
14 H -0.177 1.177
15 C 0.358 3.642
16 O -0.482 6.482
17 C -0.433 4.433
18 C -0.062 4.062
19 N -0.206 5.206
20 C -0.279 4.279
21 C -0.092 4.092
22 C -0.073 4.073
23 C -0.178 4.178
24 C -0.054 4.054
25 N -0.209 5.209
26 C -0.050 4.050
27 S 0.601 5.399
28 H 0.159 0.841
29 H 0.076 0.924
30 H 0.077 0.923
31 H 0.133 0.867
32 H 0.150 0.850
33 H 0.103 0.897
34 H 0.207 0.793
35 H 0.166 0.834
36 H 0.198 0.802
37 H 0.213 0.787
38 H 0.168 0.832
Dipole moment (debyes) X Y Z Total
from point charges 0.671 5.025 1.873 5.404
hybrid contribution -0.393 -1.278 1.607 2.090
sum 0.279 3.747 3.479 5.121
Atomic orbital electron populations
1.23571 0.74747 1.05947 1.02243 1.86484 1.25181 1.32107 1.83998
1.24507 0.92718 0.81705 0.71602 1.90619 1.67286 1.37607 1.45722
1.21448 0.87533 0.86662 1.06234 1.43139 1.59146 1.09578 1.05712
1.18853 1.32689 1.05099 0.92537 0.88767 1.26023 0.94534 1.00852
0.94468 1.69635 1.38305 1.39312 1.02044 0.86288 0.79802 0.80115
0.80479 1.16316 1.19678 1.17712 1.17270 0.77962 0.85442 0.83505
1.90668 1.57485 1.68207 1.31802 1.25960 1.19043 0.99651 0.98683
1.22361 0.97412 0.86747 0.99666 1.66389 1.16968 1.18254 1.18987
1.26664 1.03300 1.02229 0.95708 1.19058 1.04536 0.90460 0.95171
1.21988 0.92730 0.91710 1.00834 1.22536 0.99850 0.98063 0.97318
1.23622 0.92970 0.98362 0.90458 1.67732 1.12748 0.99823 1.40617
1.22857 0.94740 0.95305 0.92143 1.85564 1.55576 0.94150 1.04624
0.84051 0.92375 0.92324 0.86744 0.85037 0.89742 0.79329 0.83413
0.80220 0.78655 0.83202
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.69 10.56 113.37 1.20 1.89 16
2 O -0.36 -11.98 10.56 -51.42 -0.54 -12.52 16
3 C 0.45 18.59 8.02 71.23 0.57 19.16 16
4 O -0.52 -24.95 16.18 21.97 0.36 -24.60 16
5 C 0.11 4.34 4.56 85.63 0.39 4.73 16
6 N -0.46 -21.38 1.53 -644.38 -0.98 -22.37 16
7 C -0.36 -17.52 7.45 84.10 0.63 -16.89 16
8 H 0.10 4.96 5.50 -16.10 -0.09 4.87 16
9 C 0.05 2.46 5.46 84.95 0.46 2.92 16
10 N -0.86 -41.92 13.95 21.68 0.30 -41.62 16
11 Si 0.91 35.61 24.76 68.60 1.70 37.31 16
12 H -0.24 -8.38 6.93 99.48 0.69 -7.69 16
13 H -0.27 -10.42 7.11 99.48 0.71 -9.72 16
14 H -0.25 -9.98 6.87 99.48 0.68 -9.30 16
15 C 0.57 27.24 7.60 86.38 0.66 27.90 16
16 O -0.60 -29.65 16.44 -4.53 -0.07 -29.72 16
17 C -0.31 -13.67 6.35 24.13 0.15 -13.52 16
18 C 0.10 4.04 11.16 84.59 0.94 4.98 16
19 N -0.49 -18.71 10.11 -191.83 -1.94 -20.65 16
20 C -0.01 -0.43 7.14 87.44 0.62 0.19 16
21 C -0.09 -2.74 5.89 -20.00 -0.12 -2.86 16
22 C -0.04 -1.09 9.80 22.73 0.22 -0.87 16
23 C -0.16 -2.83 10.10 22.32 0.23 -2.60 16
24 C 0.10 2.03 11.17 84.71 0.95 2.97 16
25 N -0.50 -13.85 10.35 -194.71 -2.01 -15.87 16
26 C 0.11 3.37 10.74 85.03 0.91 4.29 16
27 S 0.33 13.62 17.37 -56.49 -0.98 12.64 16
28 H 0.14 2.21 8.14 -2.38 -0.02 2.19 16
29 H 0.06 1.47 8.13 -2.39 -0.02 1.45 16
30 H 0.06 1.49 8.13 -2.39 -0.02 1.47 16
31 H 0.12 4.40 3.73 -2.39 -0.01 4.39 16
32 H 0.13 4.98 7.37 -2.39 -0.02 4.97 16
33 H 0.29 13.07 8.32 -92.71 -0.77 12.30 16
34 H 0.19 6.90 8.06 -2.91 -0.02 6.87 16
35 H 0.15 3.54 7.87 -2.91 -0.02 3.51 16
36 H 0.18 1.67 8.06 -2.91 -0.02 1.65 16
37 H 0.20 2.18 8.06 -2.91 -0.02 2.16 16
38 H 0.15 4.77 7.24 -2.91 -0.02 4.75 16
Total: -1.00 -65.88 346.74 4.66 -61.22
By element:
Atomic # 1 Polarization: 22.85 SS G_CDS: 1.02 Total: 23.87 kcal
Atomic # 6 Polarization: 24.48 SS G_CDS: 7.82 Total: 32.29 kcal
Atomic # 7 Polarization: -95.86 SS G_CDS: -4.64 Total: -100.50 kcal
Atomic # 8 Polarization: -66.58 SS G_CDS: -0.26 Total: -66.85 kcal
Atomic # 14 Polarization: 35.61 SS G_CDS: 1.70 Total: 37.31 kcal
Atomic # 16 Polarization: 13.62 SS G_CDS: -0.98 Total: 12.64 kcal
Total: -65.88 4.66 -61.22 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000535602852.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 22.967 kcal
(2) G-P(sol) polarization free energy of solvation -65.881 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.914 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.657 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.224 kcal
(6) G-S(sol) free energy of system = (1) + (5) -38.258 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.68 seconds