Wall clock time and date at job start Wed Apr 1 2020 04:16:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86799 * 119.99821 * 2 1 4 4 H 1.48507 * 109.46724 * 240.00053 * 3 2 1 5 5 H 1.48497 * 109.47161 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46852 * 120.00374 * 3 2 1 7 7 C 1.37875 * 119.99869 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99826 * 179.97438 * 7 2 1 9 9 C 1.50705 * 120.00094 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.46840 * 180.02562 * 9 7 2 11 11 N 1.46504 * 109.46783 * 180.02562 * 10 9 7 12 12 C 1.34768 * 119.99842 * 179.97438 * 11 10 9 13 13 O 1.21365 * 120.00545 * 359.72245 * 12 11 10 14 14 C 1.49325 * 119.99870 * 179.97438 * 12 11 10 15 15 O 1.21384 * 120.00098 * 359.72468 * 14 12 11 16 16 N 1.34785 * 119.99909 * 179.72514 * 14 12 11 17 17 C 1.39439 * 119.99701 * 175.49214 * 16 14 12 18 18 C 1.37820 * 120.25430 * 34.75749 * 17 16 14 19 19 C 1.39247 * 120.81266 * 180.02562 * 18 17 16 20 20 Cl 1.73606 * 119.52282 * 179.97438 * 19 18 17 21 21 C 1.36331 * 120.94584 * 359.97438 * 19 18 17 22 22 C 1.40388 * 119.91097 * 0.02562 * 21 19 18 23 23 C 1.40822 * 121.28369 * 179.97438 * 22 21 19 24 24 C 1.36572 * 118.16084 * 179.97438 * 23 22 21 25 25 C 1.39325 * 119.92589 * 0.02562 * 24 23 22 26 26 N 1.31104 * 121.71597 * 0.02562 * 25 24 23 27 27 C 1.33545 * 121.34544 * 359.65499 * 26 25 24 28 28 H 0.97001 * 119.99692 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.46746 * 60.00257 * 9 7 2 30 30 H 1.08999 * 109.46907 * 299.99960 * 9 7 2 31 31 H 1.08993 * 109.47446 * 60.00248 * 10 9 7 32 32 H 1.08995 * 109.46844 * 299.99509 * 10 9 7 33 33 H 0.96998 * 119.99789 * 359.97438 * 11 10 9 34 34 H 0.96993 * 120.00027 * 355.48134 * 16 14 12 35 35 H 1.08004 * 119.59208 * 359.97438 * 18 17 16 36 36 H 1.08002 * 120.04197 * 180.02562 * 21 19 18 37 37 H 1.08002 * 120.91929 * 0.02562 * 23 22 21 38 38 H 1.07999 * 120.03968 * 180.02562 * 24 23 22 39 39 H 1.07995 * 119.14073 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6963 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 7 1.5128 -4.9308 -0.0012 12 6 2.1866 -6.0980 -0.0018 13 8 3.4003 -6.0981 -0.0069 14 6 1.4400 -7.3911 -0.0018 15 8 0.2262 -7.3912 0.0037 16 7 2.1139 -8.5584 -0.0081 17 6 1.4203 -9.7643 0.0868 18 6 0.1801 -9.9000 -0.4988 19 6 -0.5229 -11.0987 -0.4108 20 17 -2.0831 -11.2325 -1.1605 21 6 -0.0036 -12.1688 0.2555 22 6 1.2571 -12.0692 0.8651 23 6 1.8207 -13.1560 1.5611 24 6 3.0513 -12.9891 2.1294 25 6 3.7116 -11.7680 2.0112 26 7 3.1828 -10.7584 1.3632 27 6 1.9859 -10.8579 0.7794 28 1 -0.4850 0.8401 0.0004 29 1 0.6241 -2.5567 -0.8903 30 1 0.6247 -2.5571 0.8897 31 1 2.8719 -3.6044 0.8894 32 1 2.8719 -3.6043 -0.8905 33 1 0.5428 -4.9308 -0.0011 34 1 3.0813 -8.5595 -0.0787 35 1 -0.2522 -9.0660 -1.0318 36 1 -0.5614 -13.0917 0.3143 37 1 1.2947 -14.0958 1.6425 38 1 3.5120 -13.8027 2.6698 39 1 4.6844 -11.6500 2.4652 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000542286311.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:16:21 Heat of formation + Delta-G solvation = -22.664018 kcal Electronic energy + Delta-G solvation = -26029.934074 eV Core-core repulsion = 21963.314390 eV Total energy + Delta-G solvation = -4066.619684 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.082 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.67078 -40.52624 -38.71332 -37.75403 -36.59123 -35.63556 -34.92287 -33.10255 -32.83881 -30.93262 -29.97597 -29.61054 -26.00437 -24.88555 -24.18452 -23.99446 -22.04038 -21.06649 -20.45215 -19.00092 -18.76345 -17.74842 -17.29873 -16.86131 -16.35636 -16.08958 -15.75027 -15.33821 -15.08305 -14.92555 -14.61608 -14.51981 -14.17740 -14.07803 -13.60524 -13.54904 -13.25378 -13.03679 -12.88454 -12.33671 -12.33156 -11.69483 -11.53837 -11.32236 -11.25131 -11.17974 -11.06239 -10.69978 -10.42091 -10.18036 -10.04700 -9.83788 -9.51710 -9.28067 -9.13334 -8.76622 -8.43512 -8.24016 -6.11287 -4.15215 -0.18998 0.26308 1.20975 1.60315 1.68120 2.24545 2.40132 3.24807 3.30089 3.34346 3.36821 3.57091 3.64206 3.74907 4.18280 4.25228 4.38223 4.39912 4.50552 4.59320 4.61176 4.87174 5.04611 5.20962 5.25546 5.29695 5.55408 5.58237 5.66120 5.81026 6.07100 6.13196 6.20177 6.29908 6.51667 6.64168 6.82182 7.35771 7.41775 7.52873 7.55214 7.75347 7.85282 8.13626 8.27172 8.90040 9.49758 11.00099 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.016122 B = 0.002075 C = 0.001865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1736.351978 B =13489.760389 C =15008.610685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.060 3.940 3 Si 0.899 3.101 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.524 4.524 8 H 0.060 0.940 9 C 0.011 3.989 10 C 0.118 3.882 11 N -0.682 5.682 12 C 0.502 3.498 13 O -0.525 6.525 14 C 0.508 3.492 15 O -0.497 6.497 16 N -0.632 5.632 17 C 0.187 3.813 18 C -0.112 4.112 19 C -0.004 4.004 20 Cl -0.056 7.056 21 C -0.107 4.107 22 C -0.076 4.076 23 C -0.055 4.055 24 C -0.168 4.168 25 C 0.134 3.866 26 N -0.467 5.467 27 C 0.114 3.886 28 H 0.263 0.737 29 H 0.026 0.974 30 H 0.025 0.975 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.411 0.589 34 H 0.432 0.568 35 H 0.161 0.839 36 H 0.143 0.857 37 H 0.144 0.856 38 H 0.142 0.858 39 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.735 -31.420 1.830 31.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.143 4.143 3 Si 0.726 3.274 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.563 4.563 8 H 0.078 0.922 9 C -0.026 4.026 10 C -0.003 4.003 11 N -0.333 5.333 12 C 0.281 3.719 13 O -0.402 6.402 14 C 0.291 3.709 15 O -0.370 6.370 16 N -0.278 5.278 17 C 0.089 3.911 18 C -0.135 4.135 19 C -0.031 4.031 20 Cl -0.027 7.027 21 C -0.127 4.127 22 C -0.079 4.079 23 C -0.081 4.081 24 C -0.187 4.187 25 C -0.039 4.039 26 N -0.175 5.175 27 C -0.009 4.009 28 H 0.073 0.927 29 H 0.044 0.956 30 H 0.044 0.956 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.247 0.753 34 H 0.272 0.728 35 H 0.179 0.821 36 H 0.161 0.839 37 H 0.162 0.838 38 H 0.159 0.841 39 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 1.843 -30.291 1.645 30.392 hybrid contribution -0.192 0.069 0.085 0.221 sum 1.651 -30.223 1.730 30.317 Atomic orbital electron populations 1.69950 1.06094 1.27100 1.49897 1.25003 0.94911 0.99454 0.94899 0.86547 0.79490 0.82572 0.78775 1.20081 1.21230 1.20093 1.20964 0.93192 0.90205 1.51949 0.92186 1.19359 0.94173 0.90809 0.98292 1.21987 0.96319 0.80473 1.01519 1.46232 1.11850 1.05644 1.69581 1.19588 0.87642 0.84736 0.79976 1.90771 1.12918 1.87220 1.49303 1.20794 0.87860 0.85537 0.76699 1.90770 1.13316 1.87278 1.45625 1.42948 1.12536 1.02630 1.69711 1.17186 0.92776 0.84822 0.96307 1.21166 0.94322 0.97840 1.00145 1.20365 0.88757 0.94931 0.99055 1.98398 1.25614 1.98079 1.80601 1.20804 0.94826 0.98728 0.98377 1.18419 0.95112 0.94450 0.99926 1.21445 0.95087 0.97750 0.93804 1.21955 0.96089 0.99482 1.01218 1.23027 0.99353 0.88004 0.93495 1.67909 1.10033 1.31324 1.08245 1.18621 0.92222 0.92515 0.97590 0.92692 0.95606 0.95635 0.91686 0.91659 0.75282 0.72805 0.82108 0.83916 0.83826 0.84058 0.81872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.98 13.29 55.43 0.74 -25.24 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 21.19 29.54 -169.99 -5.02 16.17 16 4 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.52 -14.30 9.11 -34.44 -0.31 -14.61 16 8 H 0.06 1.58 7.74 -52.48 -0.41 1.18 16 9 C 0.01 0.27 5.09 -27.88 -0.14 0.13 16 10 C 0.12 2.43 5.61 -4.04 -0.02 2.40 16 11 N -0.68 -12.10 5.55 -60.77 -0.34 -12.43 16 12 C 0.50 8.49 7.88 -11.65 -0.09 8.40 16 13 O -0.52 -9.81 16.48 5.48 0.09 -9.72 16 14 C 0.51 7.60 7.72 -11.64 -0.09 7.51 16 15 O -0.50 -7.96 13.89 5.47 0.08 -7.89 16 16 N -0.63 -8.24 5.16 -10.06 -0.05 -8.29 16 17 C 0.19 2.30 6.34 -83.41 -0.53 1.77 16 18 C -0.11 -1.33 8.44 -39.36 -0.33 -1.66 16 19 C 0.00 -0.04 6.27 -39.89 -0.25 -0.29 16 20 Cl -0.06 -0.53 28.91 -51.86 -1.50 -2.03 16 21 C -0.11 -0.88 9.50 -39.46 -0.37 -1.26 16 22 C -0.08 -0.67 5.74 -106.82 -0.61 -1.29 16 23 C -0.05 -0.33 9.89 -39.21 -0.39 -0.71 16 24 C -0.17 -0.89 10.03 -39.78 -0.40 -1.29 16 25 C 0.13 0.97 11.15 -17.46 -0.19 0.78 16 26 N -0.47 -5.00 9.91 -10.85 -0.11 -5.10 16 27 C 0.11 1.27 6.62 -84.68 -0.56 0.71 16 28 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 29 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 32 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 33 H 0.41 6.89 7.94 -40.82 -0.32 6.56 16 34 H 0.43 5.33 8.06 -40.82 -0.33 5.00 16 35 H 0.16 2.08 6.15 -52.48 -0.32 1.76 16 36 H 0.14 0.79 8.06 -52.49 -0.42 0.36 16 37 H 0.14 0.42 8.06 -52.49 -0.42 0.00 16 38 H 0.14 0.31 8.06 -52.49 -0.42 -0.11 16 39 H 0.16 0.72 8.06 -52.49 -0.42 0.30 16 LS Contribution 361.92 15.07 5.45 5.45 Total: -1.00 -31.94 361.92 -8.96 -40.90 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: -3.90 Total: 6.03 kcal Atomic # 6 Polarization: 6.55 SS G_CDS: -4.40 Total: 2.15 kcal Atomic # 7 Polarization: -51.31 SS G_CDS: 0.24 Total: -51.07 kcal Atomic # 8 Polarization: -17.77 SS G_CDS: 0.17 Total: -17.61 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Atomic # 17 Polarization: -0.53 SS G_CDS: -1.50 Total: -2.03 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.94 -8.96 -40.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000542286311.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.238 kcal (2) G-P(sol) polarization free energy of solvation -31.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds