Wall clock time and date at job start Wed Apr 1 2020 04:24:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86806 * 119.99989 * 2 1 4 4 H 1.48503 * 109.46898 * 270.00246 * 3 2 1 5 5 H 1.48493 * 109.47039 * 29.99790 * 3 2 1 6 6 H 1.48494 * 109.47074 * 149.99953 * 3 2 1 7 7 C 1.37871 * 119.99904 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99922 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00047 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.47374 * 179.97438 * 9 7 2 11 11 S 1.81394 * 109.47261 * 180.02562 * 10 9 7 12 12 O 1.42101 * 110.54602 * 68.37499 * 11 10 9 13 13 O 1.42104 * 110.54356 * 291.62172 * 11 10 9 14 14 N 1.65601 * 104.44920 * 180.02562 * 11 10 9 15 15 C 1.46494 * 120.00318 * 64.99452 * 14 11 10 16 16 C 1.53002 * 109.47345 * 165.00060 * 15 14 11 17 17 H 1.09002 * 109.47070 * 305.00306 * 16 15 14 18 18 C 1.52997 * 109.46817 * 65.00126 * 16 15 14 19 19 O 1.42904 * 109.47396 * 184.99807 * 18 16 15 20 20 C 1.50701 * 109.47419 * 185.00232 * 16 15 14 21 21 C 1.38239 * 119.98421 * 299.73127 * 20 16 15 22 22 C 1.38215 * 120.01290 * 179.72824 * 21 20 16 23 23 C 1.38353 * 119.98302 * 0.53970 * 22 21 20 24 24 Cl 1.73603 * 120.01230 * 179.74899 * 23 22 21 25 25 C 1.38353 * 119.97682 * 359.73414 * 23 22 21 26 26 C 1.38211 * 119.98231 * 359.97438 * 25 23 22 27 27 H 0.97005 * 119.99931 * 359.97438 * 1 2 3 28 28 H 1.09005 * 109.47180 * 60.00430 * 9 7 2 29 29 H 1.08995 * 109.47735 * 300.00085 * 9 7 2 30 30 H 1.08997 * 109.46696 * 59.99803 * 10 9 7 31 31 H 1.09004 * 109.46641 * 300.00471 * 10 9 7 32 32 H 0.97004 * 120.00090 * 245.00102 * 14 11 10 33 33 H 1.09008 * 109.47020 * 45.00291 * 15 14 11 34 34 H 1.08997 * 109.47417 * 285.00286 * 15 14 11 35 35 H 1.09001 * 109.47630 * 305.00128 * 18 16 15 36 36 H 1.09004 * 109.47346 * 65.00258 * 18 16 15 37 37 H 0.96691 * 114.00252 * 179.97438 * 19 18 16 38 38 H 1.08001 * 119.99800 * 359.97438 * 21 20 16 39 39 H 1.07995 * 120.00911 * 180.27092 * 22 21 20 40 40 H 1.08002 * 120.00831 * 179.97438 * 25 23 22 41 41 H 1.08001 * 119.99375 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 16 1.3382 -5.2330 -0.0026 12 8 0.6636 -5.4187 -1.2394 13 8 0.6648 -5.4206 1.2346 14 7 2.5203 -6.3927 -0.0032 15 6 3.4189 -6.5234 1.1464 16 6 4.1499 -7.8655 1.0723 17 1 3.4211 -8.6725 0.9963 18 6 5.0604 -7.8830 -0.1571 19 8 5.6540 -9.1760 -0.2919 20 6 4.9806 -8.0544 2.3154 21 6 5.9809 -7.1508 2.6218 22 6 6.7394 -7.3203 3.7647 23 6 6.5047 -8.4008 4.5963 24 17 7.4613 -8.6181 6.0286 25 6 5.5072 -9.3080 4.2862 26 6 4.7454 -9.1340 3.1462 27 1 -0.4850 0.8401 0.0004 28 1 0.6240 -2.5566 -0.8904 29 1 0.6247 -2.5571 0.8896 30 1 2.8725 -3.6047 0.8877 31 1 2.8712 -3.6038 -0.8923 32 1 2.6179 -6.9854 -0.7649 33 1 2.8388 -6.4760 2.0681 34 1 4.1466 -5.7121 1.1329 35 1 4.4732 -7.6583 -1.0475 36 1 5.8437 -7.1341 -0.0399 37 1 6.2449 -9.2601 -1.0526 38 1 6.1671 -6.3099 1.9701 39 1 7.5179 -6.6119 4.0063 40 1 5.3239 -10.1519 4.9348 41 1 3.9664 -9.8418 2.9041 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588144935.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:24:17 Heat of formation + Delta-G solvation = -121.517339 kcal Electronic energy + Delta-G solvation = -25466.537754 eV Core-core repulsion = 21498.782668 eV Total energy + Delta-G solvation = -3967.755086 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.079 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.10318 -37.80200 -36.64923 -36.63339 -35.74341 -35.45078 -33.93147 -32.59275 -31.38975 -31.20216 -28.87465 -25.71987 -25.62594 -23.62321 -22.90057 -21.72702 -20.55001 -19.10916 -17.94609 -17.67772 -17.20600 -16.49854 -16.39302 -15.88798 -15.54927 -15.48524 -14.99759 -14.73052 -14.62809 -14.54253 -13.79808 -13.72524 -13.71415 -13.43640 -12.96197 -12.56041 -12.50304 -12.14822 -11.97115 -11.79880 -11.64701 -11.60437 -11.55460 -11.28975 -11.23175 -11.11247 -11.05503 -10.99828 -10.46018 -10.42466 -10.32414 -9.84877 -9.56636 -9.32601 -9.09699 -8.84804 -8.53451 -6.15569 -4.21416 0.69422 0.85526 1.00656 1.85309 3.04348 3.23617 3.30147 3.31504 3.32502 3.74784 4.16328 4.25326 4.34653 4.44951 4.58226 4.62831 4.67528 4.83129 4.94644 5.00195 5.09679 5.15084 5.19755 5.19950 5.37562 5.40305 5.54985 5.60593 5.63265 5.68381 5.84288 5.93268 5.95716 6.24152 6.43444 6.48258 6.95772 7.26415 7.27287 7.32459 7.77094 8.13818 8.81977 9.43615 10.95450 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.010980 B = 0.002570 C = 0.002263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2549.425341 B =10892.054012 C =12367.403247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.900 3.100 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.521 4.521 8 H 0.061 0.939 9 C 0.028 3.972 10 C -0.589 4.589 11 S 2.592 3.408 12 O -0.966 6.966 13 O -0.965 6.965 14 N -1.130 6.130 15 C 0.124 3.876 16 C -0.056 4.056 17 H 0.098 0.902 18 C 0.080 3.920 19 O -0.569 6.569 20 C -0.060 4.060 21 C -0.103 4.103 22 C -0.107 4.107 23 C -0.038 4.038 24 Cl -0.076 7.076 25 C -0.109 4.109 26 C -0.093 4.093 27 H 0.265 0.735 28 H 0.033 0.967 29 H 0.034 0.966 30 H 0.119 0.881 31 H 0.121 0.879 32 H 0.412 0.588 33 H 0.091 0.909 34 H 0.071 0.929 35 H 0.055 0.945 36 H 0.053 0.947 37 H 0.380 0.620 38 H 0.133 0.867 39 H 0.133 0.867 40 H 0.132 0.868 41 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.400 -19.532 4.263 25.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.145 4.145 3 Si 0.727 3.273 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.560 4.560 8 H 0.079 0.921 9 C -0.011 4.011 10 C -0.722 4.722 11 S 2.690 3.310 12 O -0.956 6.956 13 O -0.955 6.955 14 N -0.887 5.887 15 C -0.002 4.002 16 C -0.075 4.075 17 H 0.117 0.883 18 C 0.002 3.998 19 O -0.374 6.374 20 C -0.061 4.061 21 C -0.121 4.121 22 C -0.126 4.126 23 C -0.065 4.065 24 Cl -0.047 7.047 25 C -0.127 4.127 26 C -0.111 4.111 27 H 0.075 0.925 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.137 0.863 31 H 0.139 0.861 32 H 0.246 0.754 33 H 0.109 0.891 34 H 0.089 0.911 35 H 0.073 0.927 36 H 0.071 0.929 37 H 0.227 0.773 38 H 0.151 0.849 39 H 0.151 0.849 40 H 0.150 0.850 41 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 14.002 -19.638 5.108 24.654 hybrid contribution 1.567 1.124 -0.693 2.049 sum 15.568 -18.515 4.416 24.590 Atomic orbital electron populations 1.69954 1.06125 1.27241 1.49478 1.25069 0.94970 0.99558 0.94882 0.86470 0.79714 0.82873 0.78228 1.20477 1.20992 1.19751 1.20988 0.93032 0.89764 1.52259 0.92056 1.18965 0.92693 0.90535 0.98939 1.30444 1.13738 1.18022 1.10045 1.05594 0.74639 0.76600 0.74173 1.93560 1.71467 1.85347 1.45252 1.93547 1.71326 1.84922 1.45664 1.55900 1.53103 1.52532 1.27215 1.21294 0.92957 0.96235 0.89764 1.20364 0.96425 0.98975 0.91773 0.88325 1.22257 0.95587 0.85135 0.96812 1.86485 1.65787 1.32358 1.52818 1.19662 0.96017 0.94952 0.95479 1.20996 0.95118 0.99321 0.96689 1.21026 1.00481 0.96839 0.94230 1.20944 0.96559 0.98261 0.90687 1.98372 1.71191 1.96991 1.38157 1.21034 0.94875 0.98990 0.97828 1.21019 0.99250 0.97354 0.93487 0.92493 0.94832 0.94773 0.86290 0.86080 0.75440 0.89053 0.91126 0.92682 0.92905 0.77305 0.84925 0.84873 0.84965 0.84994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.14 13.29 55.43 0.74 -25.40 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.90 20.84 29.54 -169.99 -5.02 15.82 16 4 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 7 C -0.52 -14.05 9.11 -34.45 -0.31 -14.36 16 8 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 9 C 0.03 0.69 4.98 -27.88 -0.14 0.55 16 10 C -0.59 -10.51 6.01 37.16 0.22 -10.29 16 11 S 2.59 43.16 5.46 -107.50 -0.59 42.57 16 12 O -0.97 -19.05 18.08 -57.54 -1.04 -20.09 16 13 O -0.96 -19.13 17.49 -57.54 -1.01 -20.13 16 14 N -1.13 -12.76 5.74 -10.61 -0.06 -12.82 16 15 C 0.12 1.22 5.26 -4.04 -0.02 1.19 16 16 C -0.06 -0.47 2.38 -91.77 -0.22 -0.69 16 17 H 0.10 0.85 7.88 -51.93 -0.41 0.44 16 18 C 0.08 0.58 6.25 37.16 0.23 0.81 16 19 O -0.57 -4.39 13.41 -35.23 -0.47 -4.86 16 20 C -0.06 -0.54 4.55 -104.62 -0.48 -1.01 16 21 C -0.10 -0.87 8.70 -39.59 -0.34 -1.22 16 22 C -0.11 -0.93 9.83 -39.55 -0.39 -1.32 16 23 C -0.04 -0.35 6.32 -39.50 -0.25 -0.60 16 24 Cl -0.08 -0.68 28.96 -51.86 -1.50 -2.18 16 25 C -0.11 -0.95 9.83 -39.55 -0.39 -1.34 16 26 C -0.09 -0.82 9.67 -39.59 -0.38 -1.20 16 27 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 28 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.12 1.86 8.14 -51.93 -0.42 1.44 16 31 H 0.12 1.91 8.14 -51.92 -0.42 1.49 16 32 H 0.41 3.81 7.34 -34.47 -0.25 3.56 16 33 H 0.09 0.99 7.69 -51.92 -0.40 0.59 16 34 H 0.07 0.57 7.58 -51.93 -0.39 0.18 16 35 H 0.06 0.35 6.79 -51.93 -0.35 0.00 16 36 H 0.05 0.33 7.21 -51.93 -0.37 -0.04 16 37 H 0.38 1.39 9.12 45.56 0.42 1.80 16 38 H 0.13 0.89 7.13 -52.49 -0.37 0.52 16 39 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 40 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 41 H 0.13 0.98 7.95 -52.49 -0.42 0.56 16 LS Contribution 375.06 15.07 5.65 5.65 Total: -1.00 -36.09 375.06 -10.50 -46.59 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: -4.64 Total: 2.83 kcal Atomic # 6 Polarization: -25.41 SS G_CDS: -2.56 Total: -27.97 kcal Atomic # 7 Polarization: -38.90 SS G_CDS: 0.68 Total: -38.23 kcal Atomic # 8 Polarization: -42.56 SS G_CDS: -2.52 Total: -45.08 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Atomic # 16 Polarization: 43.16 SS G_CDS: -0.59 Total: 42.57 kcal Atomic # 17 Polarization: -0.68 SS G_CDS: -1.50 Total: -2.18 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -36.09 -10.50 -46.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588144935.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.928 kcal (2) G-P(sol) polarization free energy of solvation -36.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds