Wall clock time and date at job start Wed Apr 1 2020 04:24:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86806 * 119.99989 * 2 1 4 4 H 1.48503 * 109.46898 * 270.00246 * 3 2 1 5 5 H 1.48493 * 109.47039 * 29.99790 * 3 2 1 6 6 H 1.48494 * 109.47074 * 149.99953 * 3 2 1 7 7 C 1.37871 * 119.99904 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99922 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00047 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.47374 * 179.97438 * 9 7 2 11 11 S 1.81394 * 109.47261 * 180.02562 * 10 9 7 12 12 O 1.42101 * 110.54602 * 68.37499 * 11 10 9 13 13 O 1.42104 * 110.54356 * 291.62172 * 11 10 9 14 14 N 1.65601 * 104.44920 * 180.02562 * 11 10 9 15 15 C 1.46494 * 120.00318 * 64.99452 * 14 11 10 16 16 C 1.53002 * 109.47345 * 165.00060 * 15 14 11 17 17 H 1.09002 * 109.47070 * 305.00306 * 16 15 14 18 18 C 1.52997 * 109.46817 * 65.00126 * 16 15 14 19 19 O 1.42904 * 109.47396 * 184.99807 * 18 16 15 20 20 C 1.50701 * 109.47419 * 185.00232 * 16 15 14 21 21 C 1.38239 * 119.98421 * 299.73127 * 20 16 15 22 22 C 1.38215 * 120.01290 * 179.72824 * 21 20 16 23 23 C 1.38353 * 119.98302 * 0.53970 * 22 21 20 24 24 Cl 1.73603 * 120.01230 * 179.74899 * 23 22 21 25 25 C 1.38353 * 119.97682 * 359.73414 * 23 22 21 26 26 C 1.38211 * 119.98231 * 359.97438 * 25 23 22 27 27 H 0.97005 * 119.99931 * 359.97438 * 1 2 3 28 28 H 1.09005 * 109.47180 * 60.00430 * 9 7 2 29 29 H 1.08995 * 109.47735 * 300.00085 * 9 7 2 30 30 H 1.08997 * 109.46696 * 59.99803 * 10 9 7 31 31 H 1.09004 * 109.46641 * 300.00471 * 10 9 7 32 32 H 0.97004 * 120.00090 * 245.00102 * 14 11 10 33 33 H 1.09008 * 109.47020 * 45.00291 * 15 14 11 34 34 H 1.08997 * 109.47417 * 285.00286 * 15 14 11 35 35 H 1.09001 * 109.47630 * 305.00128 * 18 16 15 36 36 H 1.09004 * 109.47346 * 65.00258 * 18 16 15 37 37 H 0.96691 * 114.00252 * 179.97438 * 19 18 16 38 38 H 1.08001 * 119.99800 * 359.97438 * 21 20 16 39 39 H 1.07995 * 120.00911 * 180.27092 * 22 21 20 40 40 H 1.08002 * 120.00831 * 179.97438 * 25 23 22 41 41 H 1.08001 * 119.99375 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 16 1.3382 -5.2330 -0.0026 12 8 0.6636 -5.4187 -1.2394 13 8 0.6648 -5.4206 1.2346 14 7 2.5203 -6.3927 -0.0032 15 6 3.4189 -6.5234 1.1464 16 6 4.1499 -7.8655 1.0723 17 1 3.4211 -8.6725 0.9963 18 6 5.0604 -7.8830 -0.1571 19 8 5.6540 -9.1760 -0.2919 20 6 4.9806 -8.0544 2.3154 21 6 5.9809 -7.1508 2.6218 22 6 6.7394 -7.3203 3.7647 23 6 6.5047 -8.4008 4.5963 24 17 7.4613 -8.6181 6.0286 25 6 5.5072 -9.3080 4.2862 26 6 4.7454 -9.1340 3.1462 27 1 -0.4850 0.8401 0.0004 28 1 0.6240 -2.5566 -0.8904 29 1 0.6247 -2.5571 0.8896 30 1 2.8725 -3.6047 0.8877 31 1 2.8712 -3.6038 -0.8923 32 1 2.6179 -6.9854 -0.7649 33 1 2.8388 -6.4760 2.0681 34 1 4.1466 -5.7121 1.1329 35 1 4.4732 -7.6583 -1.0475 36 1 5.8437 -7.1341 -0.0399 37 1 6.2449 -9.2601 -1.0526 38 1 6.1671 -6.3099 1.9701 39 1 7.5179 -6.6119 4.0063 40 1 5.3239 -10.1519 4.9348 41 1 3.9664 -9.8418 2.9041 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588144935.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:24:17 Heat of formation + Delta-G solvation = -149.156493 kcal Electronic energy + Delta-G solvation = -25467.736278 eV Core-core repulsion = 21498.782668 eV Total energy + Delta-G solvation = -3968.953610 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.079 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.73640 -38.46191 -38.09994 -37.27642 -36.99286 -36.45086 -35.86407 -33.36811 -33.09258 -32.01244 -29.55057 -27.56304 -26.40105 -24.26755 -23.63131 -23.49779 -21.21800 -20.34890 -19.14566 -18.55173 -18.28715 -17.81230 -17.30765 -17.04151 -16.72720 -16.50826 -16.19329 -15.92941 -15.62909 -15.29644 -15.00452 -14.48507 -14.41361 -14.39632 -14.33616 -13.72736 -13.61645 -13.39997 -13.17143 -13.06653 -12.97375 -12.90707 -12.76065 -12.68801 -12.26888 -12.20594 -12.13757 -12.08098 -11.89437 -11.72990 -11.66400 -11.14444 -10.81918 -10.62714 -10.35621 -9.95831 -9.51127 -8.24135 -6.37737 -0.65899 0.17658 0.37294 1.18824 1.42704 1.44097 1.55094 1.86892 2.39569 2.66446 2.84793 3.09847 3.18825 3.32754 3.62852 3.85361 3.91251 3.98942 4.06094 4.18741 4.23529 4.35601 4.41525 4.46376 4.56897 4.59442 4.71876 4.78220 4.81337 4.85675 5.02864 5.10970 5.29432 5.29993 5.31418 5.32598 5.60443 5.71040 5.86305 6.08310 6.11844 6.76775 6.95393 7.32634 8.88131 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.010980 B = 0.002570 C = 0.002263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2549.425341 B =10892.054012 C =12367.403247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.005 4.005 3 Si 0.972 3.028 4 H -0.272 1.272 5 H -0.286 1.286 6 H -0.256 1.256 7 C -0.536 4.536 8 H 0.079 0.921 9 C 0.018 3.982 10 C -0.587 4.587 11 S 2.621 3.379 12 O -0.999 6.999 13 O -0.999 6.999 14 N -1.107 6.107 15 C 0.115 3.885 16 C -0.050 4.050 17 H 0.094 0.906 18 C 0.078 3.922 19 O -0.587 6.587 20 C -0.067 4.067 21 C -0.107 4.107 22 C -0.115 4.115 23 C -0.051 4.051 24 Cl -0.078 7.078 25 C -0.116 4.116 26 C -0.104 4.104 27 H 0.266 0.734 28 H 0.005 0.995 29 H 0.006 0.994 30 H 0.145 0.855 31 H 0.147 0.853 32 H 0.425 0.575 33 H 0.080 0.920 34 H 0.096 0.904 35 H 0.065 0.935 36 H 0.066 0.934 37 H 0.397 0.603 38 H 0.153 0.847 39 H 0.145 0.855 40 H 0.143 0.857 41 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.957 -19.598 3.908 26.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.203 4.203 3 Si 0.796 3.204 4 H -0.197 1.197 5 H -0.212 1.212 6 H -0.179 1.179 7 C -0.575 4.575 8 H 0.097 0.903 9 C -0.021 4.021 10 C -0.719 4.719 11 S 2.718 3.282 12 O -0.989 6.989 13 O -0.989 6.989 14 N -0.870 5.870 15 C -0.011 4.011 16 C -0.070 4.070 17 H 0.112 0.888 18 C 0.001 3.999 19 O -0.395 6.395 20 C -0.068 4.068 21 C -0.125 4.125 22 C -0.133 4.133 23 C -0.078 4.078 24 Cl -0.050 7.050 25 C -0.135 4.135 26 C -0.122 4.122 27 H 0.075 0.925 28 H 0.024 0.976 29 H 0.024 0.976 30 H 0.163 0.837 31 H 0.165 0.835 32 H 0.262 0.738 33 H 0.098 0.902 34 H 0.115 0.885 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.246 0.754 38 H 0.170 0.830 39 H 0.163 0.837 40 H 0.160 0.840 41 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 16.583 -19.716 4.734 26.194 hybrid contribution 0.803 1.031 -0.565 1.424 sum 17.386 -18.686 4.168 25.861 Atomic orbital electron populations 1.70106 1.08112 1.28241 1.51102 1.26111 0.95807 1.03882 0.94532 0.85336 0.78732 0.77780 0.78560 1.19705 1.21160 1.17935 1.21539 0.94083 0.90721 1.51150 0.90331 1.18827 0.93708 0.93185 0.96332 1.30327 1.12751 1.16106 1.12706 1.04428 0.74645 0.76542 0.72619 1.93509 1.72994 1.85863 1.46557 1.93506 1.72793 1.85446 1.47121 1.55311 1.52351 1.50956 1.28381 1.21549 0.92991 0.98174 0.88374 1.20282 0.96479 0.97818 0.92447 0.88764 1.22292 0.95921 0.85385 0.96336 1.86439 1.66390 1.32646 1.54071 1.19783 0.96285 0.95153 0.95607 1.21240 0.94691 0.99731 0.96795 1.21250 1.00867 0.96908 0.94287 1.21123 0.96923 0.98819 0.90921 1.98367 1.71248 1.97027 1.38318 1.21211 0.94807 0.99353 0.98083 1.21226 0.99591 0.97827 0.93591 0.92492 0.97626 0.97578 0.83659 0.83463 0.73758 0.90177 0.88549 0.91710 0.91540 0.75364 0.82982 0.83706 0.83961 0.84153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.25 13.29 21.45 0.28 -55.97 16 2 C -0.01 -0.28 5.46 84.65 0.46 0.18 16 3 Si 0.97 42.28 29.54 68.60 2.03 44.30 16 4 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 5 H -0.29 -12.39 7.11 99.48 0.71 -11.68 16 6 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 7 C -0.54 -28.65 9.11 25.60 0.23 -28.41 16 8 H 0.08 3.81 7.74 -2.91 -0.02 3.79 16 9 C 0.02 0.92 4.98 29.85 0.15 1.07 16 10 C -0.59 -20.03 6.01 71.98 0.43 -19.60 16 11 S 2.62 85.21 5.46 -56.49 -0.31 84.90 16 12 O -1.00 -39.20 18.08 -127.65 -2.31 -41.51 16 13 O -1.00 -39.64 17.49 -127.65 -2.23 -41.87 16 14 N -1.11 -22.49 5.74 -187.49 -1.08 -23.57 16 15 C 0.12 1.95 5.26 86.38 0.45 2.40 16 16 C -0.05 -0.73 2.38 -11.54 -0.03 -0.76 16 17 H 0.09 1.45 7.88 -2.39 -0.02 1.43 16 18 C 0.08 0.89 6.25 71.98 0.45 1.34 16 19 O -0.59 -7.57 13.41 -148.98 -2.00 -9.57 16 20 C -0.07 -1.07 4.55 -19.86 -0.09 -1.16 16 21 C -0.11 -1.54 8.70 22.26 0.19 -1.35 16 22 C -0.11 -1.80 9.83 22.29 0.22 -1.58 16 23 C -0.05 -0.89 6.32 22.32 0.14 -0.75 16 24 Cl -0.08 -1.33 28.96 -2.72 -0.08 -1.41 16 25 C -0.12 -1.91 9.83 22.29 0.22 -1.69 16 26 C -0.10 -1.71 9.67 22.26 0.22 -1.49 16 27 H 0.27 15.01 8.31 -92.70 -0.77 14.24 16 28 H 0.01 0.30 8.14 -2.38 -0.02 0.28 16 29 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 30 H 0.15 4.15 8.14 -2.39 -0.02 4.13 16 31 H 0.15 4.23 8.14 -2.39 -0.02 4.21 16 32 H 0.43 6.75 7.34 -96.74 -0.71 6.04 16 33 H 0.08 1.59 7.69 -2.38 -0.02 1.58 16 34 H 0.10 1.18 7.58 -2.39 -0.02 1.16 16 35 H 0.06 0.60 6.79 -2.39 -0.02 0.58 16 36 H 0.07 0.58 7.21 -2.39 -0.02 0.56 16 37 H 0.40 1.89 9.12 -74.06 -0.68 1.22 16 38 H 0.15 1.51 7.13 -2.91 -0.02 1.49 16 39 H 0.15 1.83 8.06 -2.91 -0.02 1.81 16 40 H 0.14 1.92 8.06 -2.91 -0.02 1.90 16 41 H 0.14 1.94 7.95 -2.91 -0.02 1.92 16 Total: -1.00 -78.90 375.06 -2.96 -81.85 By element: Atomic # 1 Polarization: 14.96 SS G_CDS: -0.32 Total: 14.64 kcal Atomic # 6 Polarization: -54.85 SS G_CDS: 3.05 Total: -51.80 kcal Atomic # 7 Polarization: -78.75 SS G_CDS: -0.79 Total: -79.54 kcal Atomic # 8 Polarization: -86.41 SS G_CDS: -6.54 Total: -92.95 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 2.03 Total: 44.30 kcal Atomic # 16 Polarization: 85.21 SS G_CDS: -0.31 Total: 84.90 kcal Atomic # 17 Polarization: -1.33 SS G_CDS: -0.08 Total: -1.41 kcal Total: -78.90 -2.96 -81.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588144935.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.305 kcal (2) G-P(sol) polarization free energy of solvation -78.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds