Wall clock time and date at job start Wed Apr 1 2020 04:40:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86802 * 120.00129 * 2 1 4 4 H 1.48506 * 109.47183 * 240.00241 * 3 2 1 5 5 H 1.48501 * 109.46994 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.46852 * 120.00403 * 3 2 1 7 7 C 1.39945 * 119.99736 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99740 * 197.70645 * 7 2 1 9 9 C 1.41396 * 120.00086 * 17.71288 * 7 2 1 10 10 C 1.40733 * 120.24499 * 24.52826 * 9 7 2 11 11 C 1.37599 * 119.74056 * 180.27552 * 10 9 7 12 12 C 1.38657 * 120.25212 * 359.49921 * 11 10 9 13 13 C 1.38616 * 120.50082 * 0.22992 * 12 11 10 14 14 S 1.76199 * 119.87529 * 180.02562 * 13 12 11 15 15 O 1.42101 * 106.39922 * 203.53821 * 14 13 12 16 16 O 1.42101 * 106.40103 * 336.46424 * 14 13 12 17 17 N 1.65602 * 107.21561 * 90.00349 * 14 13 12 18 18 C 1.50107 * 120.63718 * 89.99851 * 17 14 13 19 19 C 1.46922 * 106.77856 * 111.34449 * 18 17 14 20 20 O 1.42376 * 113.78828 * 56.80314 * 19 18 17 21 21 C 1.39645 * 108.63759 * 267.45623 * 20 19 18 22 22 C 1.55194 * 110.56981 * 101.17363 * 21 20 19 23 23 F 1.39898 * 109.57188 * 81.95626 * 22 21 20 24 24 F 1.39893 * 109.57303 * 202.20544 * 22 21 20 25 25 C 1.43430 * 120.63384 * 269.71956 * 17 14 13 26 26 C 1.37640 * 120.24452 * 0.02562 * 13 12 11 27 27 H 0.96996 * 120.00028 * 359.97438 * 1 2 3 28 28 H 1.07993 * 120.13026 * 0.03276 * 10 9 7 29 29 H 1.07999 * 119.87011 * 179.77375 * 11 10 9 30 30 H 1.08003 * 119.74809 * 180.25865 * 12 11 10 31 31 H 1.08994 * 109.99556 * 230.65751 * 18 17 14 32 32 H 1.09006 * 109.99101 * 351.93545 * 18 17 14 33 33 H 1.08995 * 108.62303 * 177.91753 * 19 18 17 34 34 H 1.09000 * 108.61911 * 295.69476 * 19 18 17 35 35 H 1.09001 * 109.25895 * 221.45132 * 21 20 19 36 36 H 1.08998 * 109.25843 * 340.89386 * 21 20 19 37 37 H 1.09002 * 108.12603 * 31.11480 * 25 17 14 38 38 H 1.08993 * 108.12585 * 147.59318 * 25 17 14 39 39 H 1.07999 * 120.12335 * 180.02562 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0961 1.6964 -1.2126 5 1 1.2773 2.7465 0.0006 6 1 3.0961 1.6963 1.2124 7 6 2.0080 -1.2120 -0.0005 8 1 3.0496 -1.2343 0.2839 9 6 1.3512 -2.4073 -0.3736 10 6 0.2198 -2.3633 -1.2094 11 6 -0.4147 -3.5325 -1.5614 12 6 0.0628 -4.7514 -1.1043 13 6 1.1797 -4.8070 -0.2853 14 16 1.7727 -6.3649 0.2855 15 8 2.5076 -6.1037 1.4734 16 8 0.6683 -7.2576 0.2352 17 7 2.8672 -6.9116 -0.8306 18 6 4.3231 -6.5679 -0.7064 19 6 5.0270 -7.8154 -0.3795 20 8 4.8206 -8.8568 -1.3281 21 6 3.7379 -9.6334 -0.9099 22 6 2.4588 -9.2587 -1.7049 23 9 2.4645 -9.9170 -2.9393 24 9 1.3264 -9.6383 -0.9765 25 6 2.4429 -7.7275 -1.9313 26 6 1.8271 -3.6498 0.0838 27 1 -0.4850 0.8400 0.0004 28 1 -0.1513 -1.4154 -1.5700 29 1 -1.2853 -3.5009 -2.1997 30 1 -0.4390 -5.6643 -1.3891 31 1 4.6934 -6.1675 -1.6501 32 1 4.4669 -5.8376 0.0900 33 1 6.0950 -7.6067 -0.3186 34 1 4.6868 -8.1614 0.5966 35 1 3.9667 -10.6866 -1.0728 36 1 3.5633 -9.4642 0.1526 37 1 1.4252 -7.4394 -2.1945 38 1 3.0836 -7.5055 -2.7847 39 1 2.6974 -3.6955 0.7217 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588905847.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:40:23 Heat of formation + Delta-G solvation = -182.348814 kcal Electronic energy + Delta-G solvation = -29602.320988 eV Core-core repulsion = 25080.131372 eV Total energy + Delta-G solvation = -4522.189617 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.084 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -48.89683 -46.94506 -39.89763 -37.71848 -36.89140 -35.89727 -35.43161 -33.91394 -32.10645 -30.15417 -29.88748 -28.37698 -26.74356 -25.55544 -22.82167 -22.03765 -21.75830 -21.05944 -19.08039 -18.30833 -17.72846 -17.50510 -17.48089 -16.89578 -16.38568 -15.95670 -15.49536 -15.21759 -15.15144 -14.78634 -14.47941 -14.14433 -13.88238 -13.56304 -13.43435 -13.39093 -13.25230 -12.98867 -12.65697 -12.52611 -12.27821 -11.99697 -11.80386 -11.69325 -11.68638 -11.46568 -11.44767 -11.37776 -11.15302 -11.03256 -10.92879 -10.67555 -10.00526 -9.88555 -9.75562 -9.40585 -9.17257 -8.12084 -7.78140 -6.98384 -4.60539 0.72525 2.09247 2.57242 2.95624 2.96935 3.01906 3.10670 3.33714 3.58993 3.77527 3.83726 4.13352 4.26087 4.30809 4.44963 4.64495 4.73188 4.88620 4.99755 5.03499 5.18980 5.24580 5.32476 5.42198 5.53715 5.61754 5.79355 5.95657 6.09760 6.33204 6.56689 6.62414 6.68894 6.80825 6.97567 7.13839 7.29355 7.65197 7.72369 7.86695 8.32324 8.60038 8.64122 9.97191 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.020038 B = 0.003371 C = 0.003162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.038472 B = 8304.192343 C = 8852.711215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.792 5.792 2 C 0.075 3.925 3 Si 0.913 3.087 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.263 1.263 7 C -0.461 4.461 8 H 0.083 0.917 9 C 0.093 3.907 10 C -0.116 4.116 11 C -0.120 4.120 12 C -0.148 4.148 13 C -0.629 4.629 14 S 2.675 3.325 15 O -0.964 6.964 16 O -0.954 6.954 17 N -0.994 5.994 18 C 0.092 3.908 19 C 0.025 3.975 20 O -0.335 6.335 21 C 0.021 3.979 22 C 0.236 3.764 23 F -0.189 7.189 24 F -0.180 7.180 25 C 0.096 3.904 26 C -0.129 4.129 27 H 0.285 0.715 28 H 0.126 0.874 29 H 0.099 0.901 30 H 0.106 0.894 31 H 0.093 0.907 32 H 0.116 0.884 33 H 0.103 0.897 34 H 0.068 0.932 35 H 0.104 0.896 36 H 0.088 0.912 37 H 0.098 0.902 38 H 0.108 0.892 39 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.154 -11.290 -3.502 14.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C -0.144 4.144 3 Si 0.737 3.263 4 H -0.187 1.187 5 H -0.202 1.202 6 H -0.188 1.188 7 C -0.490 4.490 8 H 0.101 0.899 9 C 0.089 3.911 10 C -0.136 4.136 11 C -0.139 4.139 12 C -0.169 4.169 13 C -0.721 4.721 14 S 2.773 3.227 15 O -0.954 6.954 16 O -0.945 6.945 17 N -0.828 5.828 18 C -0.032 4.032 19 C -0.052 4.052 20 O -0.252 6.252 21 C -0.058 4.058 22 C 0.196 3.804 23 F -0.171 7.171 24 F -0.161 7.161 25 C -0.034 4.034 26 C -0.151 4.151 27 H 0.096 0.904 28 H 0.143 0.857 29 H 0.118 0.882 30 H 0.124 0.876 31 H 0.111 0.889 32 H 0.134 0.866 33 H 0.121 0.879 34 H 0.086 0.914 35 H 0.122 0.878 36 H 0.106 0.894 37 H 0.116 0.884 38 H 0.126 0.874 39 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 7.830 -11.634 -2.892 14.319 hybrid contribution -0.222 1.362 -0.342 1.421 sum 7.608 -10.273 -3.235 13.186 Atomic orbital electron populations 1.69768 1.07703 1.29881 1.34348 1.25952 0.94791 1.01620 0.91997 0.86278 0.80123 0.79737 0.80163 1.18662 1.20189 1.18772 1.19577 0.98327 0.90984 1.40082 0.89916 1.17672 0.91847 0.91988 0.89591 1.21670 0.97443 0.97165 0.97274 1.20824 0.99301 0.93105 1.00695 1.20098 0.97173 0.97541 1.02091 1.29671 1.09134 1.17502 1.15832 1.02317 0.72685 0.74772 0.72961 1.93528 1.72527 1.86399 1.42975 1.93581 1.51105 1.63814 1.85959 1.57935 1.19550 1.61986 1.43324 1.21726 0.78260 0.98014 1.05168 1.22132 1.02011 0.89086 0.91994 1.87767 1.46943 1.41884 1.48589 1.23576 0.85657 0.97687 0.98895 1.23196 0.85774 0.93567 0.77850 1.93002 1.96911 1.82438 1.44702 1.93112 1.53068 1.92648 1.77223 1.21333 1.04118 0.86785 0.91146 1.20709 1.01184 0.91720 1.01455 0.90388 0.85664 0.88248 0.87584 0.88872 0.86586 0.87890 0.91361 0.87828 0.89440 0.88385 0.87404 0.87115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.33 10.95 55.55 0.61 -18.72 16 2 C 0.08 1.77 5.14 -17.34 -0.09 1.68 16 3 Si 0.91 17.49 29.60 -169.99 -5.03 12.46 16 4 H -0.26 -4.95 7.11 56.52 0.40 -4.55 16 5 H -0.28 -5.19 7.11 56.52 0.40 -4.79 16 6 H -0.26 -5.00 7.11 56.52 0.40 -4.60 16 7 C -0.46 -11.40 9.05 -37.74 -0.34 -11.75 16 8 H 0.08 1.93 7.91 -52.49 -0.41 1.52 16 9 C 0.09 2.31 5.57 -106.82 -0.60 1.72 16 10 C -0.12 -2.81 8.70 -38.87 -0.34 -3.15 16 11 C -0.12 -2.64 10.02 -39.66 -0.40 -3.03 16 12 C -0.15 -3.15 9.53 -39.29 -0.37 -3.52 16 13 C -0.63 -13.30 5.97 -39.66 -0.24 -13.54 16 14 S 2.67 48.44 5.64 -107.50 -0.61 47.83 16 15 O -0.96 -18.84 16.06 -57.17 -0.92 -19.75 16 16 O -0.95 -19.06 15.24 -57.17 -0.87 -19.93 16 17 N -0.99 -13.75 2.91 -115.89 -0.34 -14.08 16 18 C 0.09 0.99 6.27 -4.94 -0.03 0.96 16 19 C 0.03 0.23 6.01 34.25 0.21 0.44 16 20 O -0.34 -3.52 10.24 -31.95 -0.33 -3.85 16 21 C 0.02 0.23 5.89 38.32 0.23 0.45 16 22 C 0.24 3.08 2.56 -24.63 -0.06 3.02 16 23 F -0.19 -2.50 17.10 2.25 0.04 -2.46 16 24 F -0.18 -2.81 15.99 2.25 0.04 -2.77 16 25 C 0.10 1.25 4.40 -4.72 -0.02 1.23 16 26 C -0.13 -2.97 9.26 -38.87 -0.36 -3.33 16 27 H 0.29 6.32 8.30 -40.82 -0.34 5.98 16 28 H 0.13 3.09 6.16 -52.49 -0.32 2.77 16 29 H 0.10 1.91 8.06 -52.49 -0.42 1.49 16 30 H 0.11 2.05 7.60 -52.48 -0.40 1.65 16 31 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.12 1.24 7.27 -51.93 -0.38 0.86 16 33 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.07 0.63 6.77 -51.93 -0.35 0.27 16 35 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.09 0.89 6.66 -51.93 -0.35 0.54 16 37 H 0.10 1.32 7.72 -51.93 -0.40 0.92 16 38 H 0.11 1.18 7.99 -51.93 -0.41 0.76 16 39 H 0.11 2.38 7.60 -52.49 -0.40 1.99 16 LS Contribution 339.88 15.07 5.12 5.12 Total: -1.00 -30.06 339.88 -8.95 -39.01 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: -4.25 Total: 5.97 kcal Atomic # 6 Polarization: -26.41 SS G_CDS: -2.42 Total: -28.83 kcal Atomic # 7 Polarization: -33.08 SS G_CDS: 0.27 Total: -32.81 kcal Atomic # 8 Polarization: -41.42 SS G_CDS: -2.12 Total: -43.53 kcal Atomic # 9 Polarization: -5.31 SS G_CDS: 0.07 Total: -5.23 kcal Atomic # 14 Polarization: 17.49 SS G_CDS: -5.03 Total: 12.46 kcal Atomic # 16 Polarization: 48.44 SS G_CDS: -0.61 Total: 47.83 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -30.06 -8.95 -39.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588905847.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -143.336 kcal (2) G-P(sol) polarization free energy of solvation -30.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds