Wall clock time and date at job start Wed Apr 1 2020 04:40:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86802 * 120.00129 * 2 1 4 4 H 1.48506 * 109.47183 * 240.00241 * 3 2 1 5 5 H 1.48501 * 109.46994 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.46852 * 120.00403 * 3 2 1 7 7 C 1.39945 * 119.99736 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99740 * 197.70645 * 7 2 1 9 9 C 1.41396 * 120.00086 * 17.71288 * 7 2 1 10 10 C 1.40733 * 120.24499 * 24.52826 * 9 7 2 11 11 C 1.37599 * 119.74056 * 180.27552 * 10 9 7 12 12 C 1.38657 * 120.25212 * 359.49921 * 11 10 9 13 13 C 1.38616 * 120.50082 * 0.22992 * 12 11 10 14 14 S 1.76199 * 119.87529 * 180.02562 * 13 12 11 15 15 O 1.42101 * 106.39922 * 203.53821 * 14 13 12 16 16 O 1.42101 * 106.40103 * 336.46424 * 14 13 12 17 17 N 1.65602 * 107.21561 * 90.00349 * 14 13 12 18 18 C 1.50107 * 120.63718 * 89.99851 * 17 14 13 19 19 C 1.46922 * 106.77856 * 111.34449 * 18 17 14 20 20 O 1.42376 * 113.78828 * 56.80314 * 19 18 17 21 21 C 1.39645 * 108.63759 * 267.45623 * 20 19 18 22 22 C 1.55194 * 110.56981 * 101.17363 * 21 20 19 23 23 F 1.39898 * 109.57188 * 81.95626 * 22 21 20 24 24 F 1.39893 * 109.57303 * 202.20544 * 22 21 20 25 25 C 1.43430 * 120.63384 * 269.71956 * 17 14 13 26 26 C 1.37640 * 120.24452 * 0.02562 * 13 12 11 27 27 H 0.96996 * 120.00028 * 359.97438 * 1 2 3 28 28 H 1.07993 * 120.13026 * 0.03276 * 10 9 7 29 29 H 1.07999 * 119.87011 * 179.77375 * 11 10 9 30 30 H 1.08003 * 119.74809 * 180.25865 * 12 11 10 31 31 H 1.08994 * 109.99556 * 230.65751 * 18 17 14 32 32 H 1.09006 * 109.99101 * 351.93545 * 18 17 14 33 33 H 1.08995 * 108.62303 * 177.91753 * 19 18 17 34 34 H 1.09000 * 108.61911 * 295.69476 * 19 18 17 35 35 H 1.09001 * 109.25895 * 221.45132 * 21 20 19 36 36 H 1.08998 * 109.25843 * 340.89386 * 21 20 19 37 37 H 1.09002 * 108.12603 * 31.11480 * 25 17 14 38 38 H 1.08993 * 108.12585 * 147.59318 * 25 17 14 39 39 H 1.07999 * 120.12335 * 180.02562 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0961 1.6964 -1.2126 5 1 1.2773 2.7465 0.0006 6 1 3.0961 1.6963 1.2124 7 6 2.0080 -1.2120 -0.0005 8 1 3.0496 -1.2343 0.2839 9 6 1.3512 -2.4073 -0.3736 10 6 0.2198 -2.3633 -1.2094 11 6 -0.4147 -3.5325 -1.5614 12 6 0.0628 -4.7514 -1.1043 13 6 1.1797 -4.8070 -0.2853 14 16 1.7727 -6.3649 0.2855 15 8 2.5076 -6.1037 1.4734 16 8 0.6683 -7.2576 0.2352 17 7 2.8672 -6.9116 -0.8306 18 6 4.3231 -6.5679 -0.7064 19 6 5.0270 -7.8154 -0.3795 20 8 4.8206 -8.8568 -1.3281 21 6 3.7379 -9.6334 -0.9099 22 6 2.4588 -9.2587 -1.7049 23 9 2.4645 -9.9170 -2.9393 24 9 1.3264 -9.6383 -0.9765 25 6 2.4429 -7.7275 -1.9313 26 6 1.8271 -3.6498 0.0838 27 1 -0.4850 0.8400 0.0004 28 1 -0.1513 -1.4154 -1.5700 29 1 -1.2853 -3.5009 -2.1997 30 1 -0.4390 -5.6643 -1.3891 31 1 4.6934 -6.1675 -1.6501 32 1 4.4669 -5.8376 0.0900 33 1 6.0950 -7.6067 -0.3186 34 1 4.6868 -8.1614 0.5966 35 1 3.9667 -10.6866 -1.0728 36 1 3.5633 -9.4642 0.1526 37 1 1.4252 -7.4394 -2.1945 38 1 3.0836 -7.5055 -2.7847 39 1 2.6974 -3.6955 0.7217 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588905847.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:40:22 Heat of formation + Delta-G solvation = -201.702685 kcal Electronic energy + Delta-G solvation = -29603.160235 eV Core-core repulsion = 25080.131372 eV Total energy + Delta-G solvation = -4523.028864 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.084 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.94838 -48.01700 -40.72861 -39.47125 -38.41575 -37.01983 -36.85306 -35.68245 -32.98854 -31.93995 -31.62816 -29.29615 -27.69709 -27.35134 -23.75449 -23.60978 -22.90196 -22.76817 -20.43184 -19.74057 -18.97242 -18.57470 -18.50680 -18.04885 -17.71405 -17.30308 -16.94152 -16.57879 -16.48757 -16.13746 -15.67629 -15.25351 -15.12458 -14.98407 -14.92270 -14.39699 -14.33742 -14.29783 -14.02157 -13.77224 -13.69063 -13.34026 -13.30021 -13.12788 -13.09473 -13.04593 -12.87876 -12.60733 -12.57752 -12.43057 -12.22045 -11.92219 -11.58419 -11.40827 -11.13943 -10.83553 -10.35245 -9.87748 -9.58727 -8.73874 -6.46235 -0.70898 0.36628 0.82467 1.38430 1.47339 1.51245 1.81579 2.17562 2.44659 2.51892 2.57539 2.80027 2.95969 3.20093 3.37143 3.42080 3.52386 3.78932 4.12172 4.18288 4.22741 4.25810 4.29842 4.39198 4.44956 4.54086 4.62835 4.81257 4.84202 4.87673 4.88660 5.01424 5.17760 5.32984 5.40516 5.53108 5.85375 5.86611 5.91849 6.07344 6.50717 6.78780 6.82693 8.24071 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.020038 B = 0.003371 C = 0.003162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.038472 B = 8304.192343 C = 8852.711215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.036 3.964 3 Si 0.985 3.015 4 H -0.257 1.257 5 H -0.269 1.269 6 H -0.259 1.259 7 C -0.495 4.495 8 H 0.086 0.914 9 C 0.064 3.936 10 C -0.141 4.141 11 C -0.123 4.123 12 C -0.153 4.153 13 C -0.637 4.637 14 S 2.703 3.297 15 O -0.978 6.978 16 O -0.972 6.972 17 N -0.985 5.985 18 C 0.083 3.917 19 C 0.021 3.979 20 O -0.336 6.336 21 C 0.022 3.978 22 C 0.228 3.772 23 F -0.191 7.191 24 F -0.198 7.198 25 C 0.088 3.912 26 C -0.143 4.143 27 H 0.292 0.708 28 H 0.113 0.887 29 H 0.124 0.876 30 H 0.126 0.874 31 H 0.114 0.886 32 H 0.116 0.884 33 H 0.137 0.863 34 H 0.069 0.931 35 H 0.124 0.876 36 H 0.092 0.908 37 H 0.090 0.910 38 H 0.132 0.868 39 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.876 -11.936 -3.918 15.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.180 4.180 3 Si 0.805 3.195 4 H -0.181 1.181 5 H -0.194 1.194 6 H -0.183 1.183 7 C -0.524 4.524 8 H 0.104 0.896 9 C 0.060 3.940 10 C -0.161 4.161 11 C -0.142 4.142 12 C -0.174 4.174 13 C -0.726 4.726 14 S 2.798 3.202 15 O -0.968 6.968 16 O -0.963 6.963 17 N -0.822 5.822 18 C -0.039 4.039 19 C -0.056 4.056 20 O -0.253 6.253 21 C -0.057 4.057 22 C 0.188 3.812 23 F -0.172 7.172 24 F -0.179 7.179 25 C -0.041 4.041 26 C -0.164 4.164 27 H 0.103 0.897 28 H 0.131 0.869 29 H 0.142 0.858 30 H 0.144 0.856 31 H 0.132 0.868 32 H 0.134 0.866 33 H 0.154 0.846 34 H 0.087 0.913 35 H 0.142 0.858 36 H 0.110 0.890 37 H 0.108 0.892 38 H 0.150 0.850 39 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 9.534 -12.259 -3.315 15.880 hybrid contribution -0.748 1.416 -0.254 1.622 sum 8.786 -10.843 -3.569 14.405 Atomic orbital electron populations 1.69824 1.09150 1.31119 1.34947 1.26810 0.95486 1.04747 0.90956 0.85198 0.78758 0.75230 0.80288 1.18066 1.19384 1.18284 1.19885 0.98795 0.92033 1.41640 0.89587 1.18049 0.92581 0.93100 0.90242 1.21663 0.98350 0.97510 0.98559 1.21130 0.99747 0.92739 1.00598 1.20431 0.97188 0.98037 1.01722 1.30229 1.08760 1.19020 1.14634 1.01474 0.72529 0.73307 0.72934 1.93503 1.72701 1.86367 1.44264 1.93554 1.52799 1.63474 1.86442 1.57592 1.20249 1.61456 1.42910 1.22114 0.76062 0.99232 1.06485 1.22267 1.03725 0.87959 0.91669 1.87779 1.46400 1.42043 1.49040 1.23652 0.84559 0.98881 0.98622 1.23473 0.86271 0.93408 0.78016 1.92995 1.96929 1.82408 1.44859 1.93073 1.54348 1.92803 1.77688 1.21502 1.04393 0.86888 0.91332 1.20847 1.01791 0.91842 1.01929 0.89744 0.86913 0.85790 0.85584 0.86758 0.86628 0.84551 0.91277 0.85817 0.88978 0.89205 0.84983 0.86459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -41.19 10.95 21.83 0.24 -40.95 16 2 C 0.04 1.70 5.14 85.26 0.44 2.13 16 3 Si 0.99 35.82 29.60 68.60 2.03 37.85 16 4 H -0.26 -9.02 7.11 99.48 0.71 -8.31 16 5 H -0.27 -9.36 7.11 99.48 0.71 -8.65 16 6 H -0.26 -9.14 7.11 99.48 0.71 -8.43 16 7 C -0.49 -25.11 9.05 23.46 0.21 -24.89 16 8 H 0.09 4.11 7.91 -2.91 -0.02 4.09 16 9 C 0.06 3.27 5.57 -21.29 -0.12 3.15 16 10 C -0.14 -7.04 8.70 22.73 0.20 -6.85 16 11 C -0.12 -5.45 10.02 22.22 0.22 -5.22 16 12 C -0.15 -6.47 9.53 22.46 0.21 -6.25 16 13 C -0.64 -26.88 5.97 22.22 0.13 -26.75 16 14 S 2.70 95.43 5.64 -56.49 -0.32 95.11 16 15 O -0.98 -37.37 16.06 -128.00 -2.06 -39.43 16 16 O -0.97 -38.06 15.24 -128.00 -1.95 -40.01 16 17 N -0.98 -25.45 2.91 -520.58 -1.51 -26.96 16 18 C 0.08 1.57 6.27 83.79 0.53 2.10 16 19 C 0.02 0.32 6.01 70.10 0.42 0.74 16 20 O -0.34 -5.95 10.24 -137.24 -1.40 -7.35 16 21 C 0.02 0.42 5.89 72.73 0.43 0.85 16 22 C 0.23 5.54 2.56 31.96 0.08 5.62 16 23 F -0.19 -4.69 17.10 44.97 0.77 -3.92 16 24 F -0.20 -5.99 15.99 44.97 0.72 -5.27 16 25 C 0.09 2.12 4.40 87.56 0.39 2.51 16 26 C -0.14 -6.68 9.26 22.73 0.21 -6.47 16 27 H 0.29 13.16 8.30 -92.71 -0.77 12.39 16 28 H 0.11 5.80 6.16 -2.91 -0.02 5.79 16 29 H 0.12 4.71 8.06 -2.91 -0.02 4.69 16 30 H 0.13 4.74 7.60 -2.91 -0.02 4.72 16 31 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.12 2.24 7.27 -2.38 -0.02 2.22 16 33 H 0.14 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.07 1.07 6.77 -2.39 -0.02 1.05 16 35 H 0.12 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.09 1.65 6.66 -2.39 -0.02 1.63 16 37 H 0.09 2.31 7.72 -2.39 -0.02 2.29 16 38 H 0.13 2.54 7.99 -2.39 -0.02 2.52 16 39 H 0.12 5.14 7.60 -2.91 -0.02 5.11 16 Total: -1.00 -65.43 339.88 0.96 -64.47 By element: Atomic # 1 Polarization: 24.71 SS G_CDS: 1.10 Total: 25.80 kcal Atomic # 6 Polarization: -62.69 SS G_CDS: 3.35 Total: -59.33 kcal Atomic # 7 Polarization: -66.64 SS G_CDS: -1.27 Total: -67.91 kcal Atomic # 8 Polarization: -81.38 SS G_CDS: -5.41 Total: -86.79 kcal Atomic # 9 Polarization: -10.68 SS G_CDS: 1.49 Total: -9.19 kcal Atomic # 14 Polarization: 35.82 SS G_CDS: 2.03 Total: 37.85 kcal Atomic # 16 Polarization: 95.43 SS G_CDS: -0.32 Total: 95.11 kcal Total: -65.43 0.96 -64.47 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588905847.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.236 kcal (2) G-P(sol) polarization free energy of solvation -65.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -202.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -201.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds