Wall clock time and date at job start Wed Apr 1 2020 04:47:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42904 * 113.99923 * 2 1 4 4 C 1.53005 * 109.46924 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47503 * 64.99590 * 4 3 2 6 6 C 1.46495 * 120.00036 * 275.00526 * 5 4 3 7 7 C 1.50708 * 109.47018 * 279.12876 * 6 5 4 8 8 H 1.07998 * 119.99571 * 0.02562 * 7 6 5 9 9 C 1.37871 * 120.00307 * 180.02562 * 7 6 5 10 10 N 1.31509 * 120.00236 * 179.97438 * 9 7 6 11 11 Si 1.86802 * 119.99814 * 0.02562 * 9 7 6 12 12 H 1.48502 * 109.47295 * 90.00161 * 11 9 7 13 13 H 1.48502 * 109.46901 * 209.99935 * 11 9 7 14 14 H 1.48498 * 109.47261 * 329.99887 * 11 9 7 15 15 S 1.65603 * 119.99687 * 94.99755 * 5 4 3 16 16 O 1.42100 * 106.39943 * 164.54614 * 15 5 4 17 17 O 1.42097 * 106.40411 * 31.62799 * 15 5 4 18 18 C 1.76204 * 107.21917 * 278.08490 * 15 5 4 19 19 C 1.38231 * 120.00467 * 272.23428 * 18 15 5 20 20 C 1.50705 * 119.99668 * 0.02562 * 19 18 15 21 21 C 1.38219 * 120.01275 * 179.97438 * 19 18 15 22 22 C 1.38264 * 120.02693 * 0.02678 * 21 19 18 23 23 C 1.38189 * 120.01075 * 0.23033 * 22 21 19 24 24 C 1.38322 * 120.00529 * 92.21632 * 18 15 5 25 25 Cl 1.73599 * 120.01705 * 0.04231 * 24 18 15 26 26 H 1.08997 * 109.47064 * 59.99965 * 1 2 3 27 27 H 1.08992 * 109.47143 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46892 * 300.00441 * 1 2 3 29 29 H 1.08998 * 109.47571 * 59.99850 * 3 2 1 30 30 H 1.09000 * 109.47040 * 299.99833 * 3 2 1 31 31 H 1.09000 * 109.46920 * 304.99291 * 4 3 2 32 32 H 1.08997 * 109.47066 * 185.00120 * 4 3 2 33 33 H 1.08998 * 109.47898 * 39.12593 * 6 5 4 34 34 H 1.09006 * 109.47358 * 159.13267 * 6 5 4 35 35 H 0.97001 * 120.00302 * 180.02562 * 10 9 7 36 36 H 1.09004 * 109.46918 * 276.77393 * 20 19 18 37 37 H 1.08995 * 109.46893 * 36.77640 * 20 19 18 38 38 H 1.09004 * 109.47186 * 156.77645 * 20 19 18 39 39 H 1.08000 * 119.99098 * 179.97438 * 21 19 18 40 40 H 1.07998 * 119.99545 * 179.97438 * 22 21 19 41 41 H 1.07998 * 120.01001 * 179.74833 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9758 0.5643 -1.2526 6 6 4.0004 -0.8950 -1.3780 7 6 5.2533 -1.4333 -0.7362 8 1 5.9601 -0.7560 -0.2802 9 6 5.4970 -2.7903 -0.7312 10 7 6.5905 -3.2599 -0.1716 11 14 4.2747 -3.9617 -1.5206 12 1 4.6268 -4.1552 -2.9502 13 1 4.3183 -5.2696 -0.8187 14 1 2.9071 -3.3916 -1.4205 15 16 4.4455 1.5129 -2.5262 16 8 5.1420 0.6611 -3.4255 17 8 5.0194 2.6848 -1.9636 18 6 2.9816 2.0274 -3.3612 19 6 2.4401 1.2370 -4.3576 20 6 3.1016 -0.0651 -4.7295 21 6 1.2915 1.6401 -5.0123 22 6 0.6837 2.8343 -4.6714 23 6 1.2271 3.6278 -3.6791 24 6 2.3738 3.2220 -3.0193 25 17 3.0535 4.2154 -1.7685 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.6886 1.8465 0.8899 30 1 1.6886 1.8464 -0.8900 31 1 3.8515 0.5683 0.8410 32 1 3.9786 2.1765 0.0889 33 1 3.1273 -1.3173 -0.8807 34 1 3.9859 -1.1694 -2.4329 35 1 6.7622 -4.2146 -0.1684 36 1 3.9143 0.1274 -5.4300 37 1 3.4997 -0.5395 -3.8326 38 1 2.3692 -0.7248 -5.1950 39 1 0.8690 1.0225 -5.7911 40 1 -0.2135 3.1490 -5.1836 41 1 0.7546 4.5625 -3.4156 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591324603.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:47:18 Heat of formation + Delta-G solvation = -98.888354 kcal Electronic energy + Delta-G solvation = -28364.783010 eV Core-core repulsion = 24398.009190 eV Total energy + Delta-G solvation = -3966.773820 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.079 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.54171 -39.11649 -38.53705 -37.51769 -37.08046 -36.82101 -34.56013 -33.88422 -32.13352 -31.38482 -28.88747 -28.10706 -27.00098 -24.43676 -24.26843 -23.22483 -22.90286 -20.00506 -19.12528 -18.98438 -18.26600 -17.64064 -17.14451 -17.04916 -16.97178 -16.48901 -16.02573 -15.82028 -15.65366 -15.28452 -15.15340 -14.53912 -14.46617 -14.20546 -13.95712 -13.78823 -13.71059 -13.45666 -13.39183 -13.17813 -13.08683 -12.95345 -12.73290 -12.53684 -12.49038 -12.39287 -12.10807 -11.93775 -11.91486 -11.80210 -11.60456 -11.28183 -10.73592 -10.58836 -10.38190 -9.76631 -9.73196 -8.25672 -6.29582 -0.67668 -0.34626 0.05780 0.91212 1.37854 1.40682 1.51247 1.97858 2.38260 2.39230 2.81600 2.94011 3.09276 3.22046 3.61073 3.83344 3.89193 4.08239 4.12701 4.18803 4.23310 4.37072 4.41206 4.44674 4.56349 4.58801 4.61768 4.71990 4.77576 4.87414 4.89256 4.95483 5.11018 5.15422 5.21800 5.31054 5.44524 5.54777 5.69740 5.74804 6.34064 6.36229 6.72475 7.32611 8.91668 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.012372 B = 0.005393 C = 0.005306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2262.636436 B = 5190.829476 C = 5275.438840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.403 6.403 3 C 0.048 3.952 4 C 0.115 3.885 5 N -0.974 5.974 6 C 0.235 3.765 7 C -0.538 4.538 8 H 0.031 0.969 9 C 0.011 3.989 10 N -0.948 5.948 11 Si 0.932 3.068 12 H -0.264 1.264 13 H -0.279 1.279 14 H -0.232 1.232 15 S 2.674 3.326 16 O -0.980 6.980 17 O -0.973 6.973 18 C -0.689 4.689 19 C 0.022 3.978 20 C -0.156 4.156 21 C -0.135 4.135 22 C -0.036 4.036 23 C -0.137 4.137 24 C 0.035 3.965 25 Cl -0.041 7.041 26 H 0.046 0.954 27 H 0.088 0.912 28 H 0.055 0.945 29 H 0.083 0.917 30 H 0.051 0.949 31 H 0.082 0.918 32 H 0.103 0.897 33 H 0.059 0.941 34 H 0.040 0.960 35 H 0.267 0.733 36 H 0.090 0.910 37 H 0.062 0.938 38 H 0.107 0.893 39 H 0.171 0.829 40 H 0.186 0.814 41 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.269 13.410 -8.597 26.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.323 6.323 3 C -0.030 4.030 4 C -0.011 4.011 5 N -0.812 5.812 6 C 0.111 3.889 7 C -0.577 4.577 8 H 0.049 0.951 9 C -0.187 4.187 10 N -0.589 5.589 11 Si 0.754 3.246 12 H -0.189 1.189 13 H -0.204 1.204 14 H -0.155 1.155 15 S 2.767 3.233 16 O -0.970 6.970 17 O -0.964 6.964 18 C -0.779 4.779 19 C 0.020 3.980 20 C -0.212 4.212 21 C -0.154 4.154 22 C -0.054 4.054 23 C -0.156 4.156 24 C 0.007 3.993 25 Cl -0.012 7.012 26 H 0.065 0.935 27 H 0.107 0.893 28 H 0.073 0.927 29 H 0.101 0.899 30 H 0.069 0.931 31 H 0.100 0.900 32 H 0.121 0.879 33 H 0.077 0.923 34 H 0.058 0.942 35 H 0.076 0.924 36 H 0.109 0.891 37 H 0.081 0.919 38 H 0.126 0.874 39 H 0.188 0.812 40 H 0.203 0.797 41 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -20.136 13.392 -8.636 25.679 hybrid contribution -0.125 -0.419 0.196 0.479 sum -20.261 12.973 -8.440 25.496 Atomic orbital electron populations 1.22904 0.80180 1.03375 1.00725 1.88020 1.20909 1.27884 1.95458 1.23105 0.93169 0.85231 1.01466 1.21496 0.93292 0.99090 0.87197 1.56993 1.82506 1.16444 1.25211 1.19392 0.96636 0.75961 0.96947 1.21694 1.06192 0.92821 1.37035 0.95079 1.25819 0.97317 1.00062 0.95463 1.70061 1.27904 1.14322 1.46577 0.85935 0.81178 0.78274 0.79201 1.18851 1.20424 1.15473 1.02179 0.75058 0.72738 0.73322 1.93561 1.71825 1.66907 1.64703 1.93579 1.76256 1.48474 1.78044 1.30466 1.25744 1.05777 1.15918 1.19808 0.93970 0.93876 0.90347 1.21551 1.01897 0.93782 1.03998 1.21698 0.94401 0.98376 1.00910 1.21937 0.98862 0.91640 0.92930 1.21575 0.94159 1.02580 0.97332 1.20752 0.95321 0.90750 0.92472 1.98454 1.83987 1.68389 1.50361 0.93508 0.89307 0.92675 0.89906 0.93055 0.90000 0.87937 0.92313 0.94231 0.92430 0.89147 0.91902 0.87405 0.81202 0.79694 0.81343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.53 11.01 113.37 1.25 1.77 16 2 O -0.40 -12.74 9.00 -148.98 -1.34 -14.08 16 3 C 0.05 1.39 6.28 71.98 0.45 1.84 16 4 C 0.11 4.18 6.11 86.38 0.53 4.70 16 5 N -0.97 -41.45 2.77 -519.84 -1.44 -42.89 16 6 C 0.23 11.39 4.07 85.64 0.35 11.74 16 7 C -0.54 -32.13 9.90 25.60 0.25 -31.88 16 8 H 0.03 2.07 8.06 -2.91 -0.02 2.05 16 9 C 0.01 0.66 5.47 84.65 0.46 1.12 16 10 N -0.95 -60.96 13.96 21.44 0.30 -60.66 16 11 Si 0.93 43.93 27.47 68.60 1.88 45.81 16 12 H -0.26 -11.98 7.11 99.48 0.71 -11.27 16 13 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 14 H -0.23 -9.81 6.54 99.48 0.65 -9.16 16 15 S 2.67 110.36 5.10 -56.49 -0.29 110.07 16 16 O -0.98 -46.42 13.43 -128.00 -1.72 -48.14 16 17 O -0.97 -41.61 13.38 -128.00 -1.71 -43.32 16 18 C -0.69 -21.54 5.68 22.29 0.13 -21.42 16 19 C 0.02 0.58 5.88 -19.87 -0.12 0.46 16 20 C -0.16 -4.55 8.33 71.24 0.59 -3.96 16 21 C -0.14 -2.30 9.67 22.27 0.22 -2.08 16 22 C -0.04 -0.46 10.05 22.26 0.22 -0.23 16 23 C -0.14 -2.34 9.83 22.29 0.22 -2.12 16 24 C 0.04 0.92 5.22 22.32 0.12 1.04 16 25 Cl -0.04 -1.14 25.02 -2.72 -0.07 -1.21 16 26 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 28 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 30 H 0.05 1.36 6.39 -2.39 -0.02 1.34 16 31 H 0.08 3.24 8.11 -2.39 -0.02 3.22 16 32 H 0.10 3.48 6.86 -2.39 -0.02 3.46 16 33 H 0.06 2.77 5.63 -2.39 -0.01 2.75 16 34 H 0.04 1.91 4.16 -2.38 -0.01 1.90 16 35 H 0.27 15.93 8.31 -92.71 -0.77 15.16 16 36 H 0.09 2.71 7.80 -2.38 -0.02 2.70 16 37 H 0.06 2.30 3.47 -2.39 -0.01 2.29 16 38 H 0.11 2.26 8.04 -2.38 -0.02 2.24 16 39 H 0.17 1.70 8.06 -2.91 -0.02 1.68 16 40 H 0.19 0.64 8.06 -2.91 -0.02 0.62 16 41 H 0.17 1.82 8.06 -2.91 -0.02 1.79 16 Total: -1.00 -80.60 351.93 1.29 -79.31 By element: Atomic # 1 Polarization: 13.11 SS G_CDS: 1.00 Total: 14.12 kcal Atomic # 6 Polarization: -43.68 SS G_CDS: 4.67 Total: -39.01 kcal Atomic # 7 Polarization: -102.41 SS G_CDS: -1.14 Total: -103.55 kcal Atomic # 8 Polarization: -100.77 SS G_CDS: -4.77 Total: -105.54 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 1.88 Total: 45.81 kcal Atomic # 16 Polarization: 110.36 SS G_CDS: -0.29 Total: 110.07 kcal Atomic # 17 Polarization: -1.14 SS G_CDS: -0.07 Total: -1.21 kcal Total: -80.60 1.29 -79.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591324603.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.577 kcal (2) G-P(sol) polarization free energy of solvation -80.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds