Wall clock time and date at job start Wed Apr 1 2020 04:23:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86804 * 119.99952 * 2 1 4 4 H 1.48499 * 109.46824 * 274.99533 * 3 2 1 5 5 H 1.48496 * 109.47205 * 34.99494 * 3 2 1 6 6 H 1.48497 * 109.46951 * 154.99661 * 3 2 1 7 7 C 1.37876 * 119.99752 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99746 * 184.92370 * 7 2 1 9 9 C 1.50702 * 120.00153 * 4.92358 * 7 2 1 10 10 O 1.42895 * 110.88724 * 298.63219 * 9 7 2 11 11 C 1.55157 * 111.03408 * 62.53645 * 9 7 2 12 12 C 1.54333 * 103.02103 * 153.39531 * 11 9 7 13 13 N 1.47021 * 107.26581 * 338.13756 * 12 11 9 14 14 S 1.65599 * 125.65055 * 178.84798 * 13 12 11 15 15 O 1.42100 * 106.40335 * 156.15131 * 14 13 12 16 16 O 1.42101 * 106.40140 * 23.23247 * 14 13 12 17 17 C 1.76195 * 107.21971 * 269.69583 * 14 13 12 18 18 C 1.38233 * 120.00316 * 89.99495 * 17 14 13 19 19 C 1.38232 * 120.00228 * 180.27665 * 18 17 14 20 20 C 1.38237 * 120.00095 * 359.46877 * 19 18 17 21 21 C 1.50701 * 120.00381 * 180.27976 * 20 19 18 22 22 F 1.39899 * 109.47267 * 120.28021 * 21 20 19 23 23 F 1.39906 * 109.46938 * 240.28023 * 21 20 19 24 24 C 1.38238 * 119.99785 * 0.55517 * 20 19 18 25 25 C 1.38238 * 119.99872 * 359.70326 * 24 20 19 26 26 C 1.47430 * 108.70006 * 358.58979 * 13 12 11 27 27 H 0.97007 * 120.00050 * 0.02562 * 1 2 3 28 28 H 0.96701 * 114.00360 * 56.11494 * 10 9 7 29 29 H 1.09007 * 110.71675 * 271.95507 * 11 9 7 30 30 H 1.09003 * 110.72376 * 35.04691 * 11 9 7 31 31 H 1.08996 * 109.99131 * 218.66319 * 12 11 9 32 32 H 1.09000 * 109.77880 * 97.49362 * 12 11 9 33 33 H 1.07999 * 119.99908 * 0.02562 * 18 17 14 34 34 H 1.08003 * 120.00474 * 179.72906 * 19 18 17 35 35 H 1.09002 * 109.46926 * 0.27625 * 21 20 19 36 36 H 1.07998 * 120.00256 * 179.71727 * 24 20 19 37 37 H 1.08000 * 119.99959 * 180.02562 * 25 24 20 38 38 H 1.09001 * 110.36898 * 143.19948 * 26 13 12 39 39 H 1.09006 * 110.36031 * 265.40337 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.3910 2.1074 -1.3948 5 1 1.5034 2.6199 0.8029 6 1 3.5955 1.4120 0.5918 7 6 2.0045 -1.1941 0.0005 8 1 3.0815 -1.1958 0.0808 9 6 1.2551 -2.4968 -0.1109 10 8 0.3617 -2.6665 0.9913 11 6 0.4964 -2.5891 -1.4612 12 6 0.4025 -4.1103 -1.7040 13 7 1.4669 -4.7450 -0.9129 14 16 1.7602 -6.3721 -0.8193 15 8 3.1257 -6.5132 -0.4522 16 8 1.2081 -6.9477 -1.9954 17 6 0.8150 -6.9957 0.5306 18 6 -0.4742 -7.4484 0.3210 19 6 -1.2177 -7.9323 1.3811 20 6 -0.6682 -7.9738 2.6489 21 6 -1.4766 -8.5072 3.8035 22 9 -0.8188 -9.6070 4.3647 23 9 -1.6230 -7.5077 4.7714 24 6 0.6208 -7.5207 2.8587 25 6 1.3625 -7.0318 1.7995 26 6 2.2337 -3.6925 -0.2217 27 1 -0.4850 0.8401 -0.0004 28 1 -0.2699 -1.9425 1.1008 29 1 -0.4967 -2.1477 -1.3764 30 1 1.0646 -2.1069 -2.2566 31 1 0.5469 -4.3284 -2.7621 32 1 -0.5708 -4.4766 -1.3773 33 1 -0.9019 -7.4202 -0.6702 34 1 -2.2265 -8.2819 1.2182 35 1 -2.4598 -8.8148 3.4473 36 1 1.0486 -7.5488 3.8499 37 1 2.3697 -6.6782 1.9633 38 1 2.5333 -4.0308 0.7702 39 1 3.1099 -3.4148 -0.8077 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592077438.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:23:12 Heat of formation + Delta-G solvation = -192.243430 kcal Electronic energy + Delta-G solvation = -28896.181916 eV Core-core repulsion = 24373.563237 eV Total energy + Delta-G solvation = -4522.618680 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.084 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.27336 -47.25536 -39.42264 -38.10807 -37.07519 -35.69051 -34.32829 -32.55274 -32.21612 -31.33877 -29.31105 -28.33949 -26.67933 -24.91688 -23.23454 -22.34621 -21.55374 -19.87909 -18.98755 -18.16280 -17.70960 -17.57722 -17.48168 -17.02928 -16.96078 -15.74509 -15.02606 -14.97878 -14.88233 -14.52732 -14.25396 -14.20163 -13.95432 -13.74873 -13.62209 -13.48295 -13.12910 -12.97296 -12.75512 -12.48294 -12.00138 -11.94668 -11.87695 -11.83460 -11.60825 -11.44895 -11.39147 -11.08761 -10.84839 -10.81418 -10.56243 -10.48602 -10.06573 -9.71971 -9.45528 -9.25406 -8.73141 -8.45493 -8.24106 -6.33655 -4.41177 0.31444 0.65309 1.07651 2.98777 3.16880 3.25439 3.28608 3.31838 3.38953 3.81706 3.93601 4.16018 4.22141 4.33911 4.63647 4.71936 4.74093 4.93453 5.04661 5.21739 5.33611 5.37273 5.66061 5.74826 5.77860 5.83593 5.89921 5.96071 5.98215 6.13022 6.30168 6.52565 6.53012 6.71273 6.88016 6.97144 7.30143 7.32703 7.69824 7.96841 8.61777 9.27064 9.40751 10.73942 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.012893 B = 0.003561 C = 0.003064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2171.258377 B = 7860.409345 C = 9136.019232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.074 3.926 3 Si 0.902 3.098 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.538 4.538 8 H 0.066 0.934 9 C 0.251 3.749 10 O -0.585 6.585 11 C -0.134 4.134 12 C 0.122 3.878 13 N -1.001 6.001 14 S 2.706 3.294 15 O -0.956 6.956 16 O -0.960 6.960 17 C -0.652 4.652 18 C -0.021 4.021 19 C -0.108 4.108 20 C -0.123 4.123 21 C 0.311 3.689 22 F -0.198 7.198 23 F -0.195 7.195 24 C -0.100 4.100 25 C -0.014 4.014 26 C 0.135 3.865 27 H 0.269 0.731 28 H 0.385 0.615 29 H 0.083 0.917 30 H 0.068 0.932 31 H 0.059 0.941 32 H 0.054 0.946 33 H 0.146 0.854 34 H 0.138 0.862 35 H 0.122 0.878 36 H 0.137 0.863 37 H 0.147 0.853 38 H 0.066 0.934 39 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.517 -13.864 2.527 14.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.129 4.129 3 Si 0.730 3.270 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.196 1.196 7 C -0.577 4.577 8 H 0.085 0.915 9 C 0.209 3.791 10 O -0.395 6.395 11 C -0.174 4.174 12 C -0.002 4.002 13 N -0.840 5.840 14 S 2.796 3.204 15 O -0.946 6.946 16 O -0.950 6.950 17 C -0.737 4.737 18 C -0.040 4.040 19 C -0.127 4.127 20 C -0.125 4.125 21 C 0.257 3.743 22 F -0.180 7.180 23 F -0.176 7.176 24 C -0.119 4.119 25 C -0.034 4.034 26 C 0.011 3.989 27 H 0.079 0.921 28 H 0.236 0.764 29 H 0.101 0.899 30 H 0.087 0.913 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.164 0.836 34 H 0.156 0.844 35 H 0.139 0.861 36 H 0.155 0.845 37 H 0.164 0.836 38 H 0.085 0.915 39 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -3.772 -14.898 2.121 15.514 hybrid contribution -0.465 1.511 0.708 1.732 sum -4.237 -13.387 2.829 14.324 Atomic orbital electron populations 1.69634 1.06017 1.27726 1.50080 1.24986 0.94975 0.99537 0.93429 0.86412 0.79976 0.82517 0.78134 1.20485 1.21088 1.19636 1.21506 0.94160 0.90294 1.51729 0.91548 1.19608 0.85973 0.90451 0.83048 1.86073 1.51155 1.50628 1.51658 1.23165 1.03003 0.90339 1.00875 1.21844 0.88530 0.96372 0.93496 1.58416 1.44101 1.21568 1.59961 1.01539 0.73635 0.71648 0.73599 1.93569 1.31105 1.85499 1.84456 1.93550 1.80288 1.76495 1.44716 1.31483 1.10022 1.14797 1.17375 1.20896 0.91467 0.91917 0.99722 1.21011 1.00269 1.00008 0.91444 1.20629 0.96054 1.00924 0.94849 1.20477 0.96062 0.75400 0.82362 1.93023 1.83773 1.54368 1.86786 1.93051 1.96571 1.62112 1.65854 1.21087 0.93366 0.97513 0.99933 1.20954 0.99680 0.92271 0.90456 1.22207 0.94342 0.86977 0.95372 0.92134 0.76421 0.89859 0.91331 0.92250 0.92806 0.83614 0.84371 0.86064 0.84544 0.83555 0.91526 0.90426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.27 10.77 55.43 0.60 -21.67 16 2 C 0.07 1.81 5.26 -17.82 -0.09 1.72 16 3 Si 0.90 19.55 29.54 -169.99 -5.02 14.53 16 4 H -0.28 -6.03 7.11 56.52 0.40 -5.62 16 5 H -0.29 -6.20 7.11 56.52 0.40 -5.80 16 6 H -0.27 -5.91 7.11 56.52 0.40 -5.50 16 7 C -0.54 -13.36 8.26 -34.44 -0.28 -13.64 16 8 H 0.07 1.64 7.79 -52.49 -0.41 1.23 16 9 C 0.25 5.69 0.89 -89.63 -0.08 5.61 16 10 O -0.59 -13.97 13.19 -35.23 -0.46 -14.43 16 11 C -0.13 -2.77 5.50 -24.89 -0.14 -2.91 16 12 C 0.12 2.17 6.99 -3.06 -0.02 2.15 16 13 N -1.00 -18.04 3.70 -111.42 -0.41 -18.45 16 14 S 2.71 44.92 5.94 -107.50 -0.64 44.28 16 15 O -0.96 -17.56 16.87 -57.17 -0.96 -18.53 16 16 O -0.96 -16.91 16.86 -57.17 -0.96 -17.87 16 17 C -0.65 -9.63 5.97 -39.58 -0.24 -9.87 16 18 C -0.02 -0.27 9.52 -39.59 -0.38 -0.64 16 19 C -0.11 -1.16 9.67 -39.58 -0.38 -1.54 16 20 C -0.12 -1.41 5.37 -104.62 -0.56 -1.98 16 21 C 0.31 2.93 5.45 36.01 0.20 3.13 16 22 F -0.20 -2.12 17.26 2.25 0.04 -2.08 16 23 F -0.19 -2.28 17.26 2.25 0.04 -2.24 16 24 C -0.10 -1.27 9.60 -39.58 -0.38 -1.65 16 25 C -0.01 -0.20 9.52 -39.58 -0.38 -0.58 16 26 C 0.14 2.72 6.15 -2.53 -0.02 2.70 16 27 H 0.27 6.44 8.31 -40.82 -0.34 6.10 16 28 H 0.38 9.42 7.18 45.56 0.33 9.75 16 29 H 0.08 1.80 7.71 -51.93 -0.40 1.40 16 30 H 0.07 1.43 8.03 -51.93 -0.42 1.01 16 31 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 32 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.15 1.63 7.62 -52.49 -0.40 1.23 16 34 H 0.14 0.95 7.95 -52.48 -0.42 0.53 16 35 H 0.12 0.67 7.88 -51.93 -0.41 0.26 16 36 H 0.14 1.50 8.06 -52.49 -0.42 1.08 16 37 H 0.15 1.93 7.62 -52.49 -0.40 1.53 16 38 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 39 H 0.08 1.51 8.03 -51.93 -0.42 1.09 16 LS Contribution 351.47 15.07 5.30 5.30 Total: -1.00 -29.52 351.47 -9.01 -38.53 By element: Atomic # 1 Polarization: 13.91 SS G_CDS: -3.77 Total: 10.14 kcal Atomic # 6 Polarization: -14.76 SS G_CDS: -2.75 Total: -17.51 kcal Atomic # 7 Polarization: -40.31 SS G_CDS: 0.18 Total: -40.12 kcal Atomic # 8 Polarization: -48.44 SS G_CDS: -2.39 Total: -50.83 kcal Atomic # 9 Polarization: -4.40 SS G_CDS: 0.08 Total: -4.32 kcal Atomic # 14 Polarization: 19.55 SS G_CDS: -5.02 Total: 14.53 kcal Atomic # 16 Polarization: 44.92 SS G_CDS: -0.64 Total: 44.28 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -29.52 -9.01 -38.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592077438.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -153.712 kcal (2) G-P(sol) polarization free energy of solvation -29.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds