Wall clock time and date at job start Wed Apr 1 2020 04:23:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86804 * 119.99952 * 2 1 4 4 H 1.48499 * 109.46824 * 274.99533 * 3 2 1 5 5 H 1.48496 * 109.47205 * 34.99494 * 3 2 1 6 6 H 1.48497 * 109.46951 * 154.99661 * 3 2 1 7 7 C 1.37876 * 119.99752 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99746 * 184.92370 * 7 2 1 9 9 C 1.50702 * 120.00153 * 4.92358 * 7 2 1 10 10 O 1.42895 * 110.88724 * 298.63219 * 9 7 2 11 11 C 1.55157 * 111.03408 * 62.53645 * 9 7 2 12 12 C 1.54333 * 103.02103 * 153.39531 * 11 9 7 13 13 N 1.47021 * 107.26581 * 338.13756 * 12 11 9 14 14 S 1.65599 * 125.65055 * 178.84798 * 13 12 11 15 15 O 1.42100 * 106.40335 * 156.15131 * 14 13 12 16 16 O 1.42101 * 106.40140 * 23.23247 * 14 13 12 17 17 C 1.76195 * 107.21971 * 269.69583 * 14 13 12 18 18 C 1.38233 * 120.00316 * 89.99495 * 17 14 13 19 19 C 1.38232 * 120.00228 * 180.27665 * 18 17 14 20 20 C 1.38237 * 120.00095 * 359.46877 * 19 18 17 21 21 C 1.50701 * 120.00381 * 180.27976 * 20 19 18 22 22 F 1.39899 * 109.47267 * 120.28021 * 21 20 19 23 23 F 1.39906 * 109.46938 * 240.28023 * 21 20 19 24 24 C 1.38238 * 119.99785 * 0.55517 * 20 19 18 25 25 C 1.38238 * 119.99872 * 359.70326 * 24 20 19 26 26 C 1.47430 * 108.70006 * 358.58979 * 13 12 11 27 27 H 0.97007 * 120.00050 * 0.02562 * 1 2 3 28 28 H 0.96701 * 114.00360 * 56.11494 * 10 9 7 29 29 H 1.09007 * 110.71675 * 271.95507 * 11 9 7 30 30 H 1.09003 * 110.72376 * 35.04691 * 11 9 7 31 31 H 1.08996 * 109.99131 * 218.66319 * 12 11 9 32 32 H 1.09000 * 109.77880 * 97.49362 * 12 11 9 33 33 H 1.07999 * 119.99908 * 0.02562 * 18 17 14 34 34 H 1.08003 * 120.00474 * 179.72906 * 19 18 17 35 35 H 1.09002 * 109.46926 * 0.27625 * 21 20 19 36 36 H 1.07998 * 120.00256 * 179.71727 * 24 20 19 37 37 H 1.08000 * 119.99959 * 180.02562 * 25 24 20 38 38 H 1.09001 * 110.36898 * 143.19948 * 26 13 12 39 39 H 1.09006 * 110.36031 * 265.40337 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.3910 2.1074 -1.3948 5 1 1.5034 2.6199 0.8029 6 1 3.5955 1.4120 0.5918 7 6 2.0045 -1.1941 0.0005 8 1 3.0815 -1.1958 0.0808 9 6 1.2551 -2.4968 -0.1109 10 8 0.3617 -2.6665 0.9913 11 6 0.4964 -2.5891 -1.4612 12 6 0.4025 -4.1103 -1.7040 13 7 1.4669 -4.7450 -0.9129 14 16 1.7602 -6.3721 -0.8193 15 8 3.1257 -6.5132 -0.4522 16 8 1.2081 -6.9477 -1.9954 17 6 0.8150 -6.9957 0.5306 18 6 -0.4742 -7.4484 0.3210 19 6 -1.2177 -7.9323 1.3811 20 6 -0.6682 -7.9738 2.6489 21 6 -1.4766 -8.5072 3.8035 22 9 -0.8188 -9.6070 4.3647 23 9 -1.6230 -7.5077 4.7714 24 6 0.6208 -7.5207 2.8587 25 6 1.3625 -7.0318 1.7995 26 6 2.2337 -3.6925 -0.2217 27 1 -0.4850 0.8401 -0.0004 28 1 -0.2699 -1.9425 1.1008 29 1 -0.4967 -2.1477 -1.3764 30 1 1.0646 -2.1069 -2.2566 31 1 0.5469 -4.3284 -2.7621 32 1 -0.5708 -4.4766 -1.3773 33 1 -0.9019 -7.4202 -0.6702 34 1 -2.2265 -8.2819 1.2182 35 1 -2.4598 -8.8148 3.4473 36 1 1.0486 -7.5488 3.8499 37 1 2.3697 -6.6782 1.9633 38 1 2.5333 -4.0308 0.7702 39 1 3.1099 -3.4148 -0.8077 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592077438.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:23:11 Heat of formation + Delta-G solvation = -212.647817 kcal Electronic energy + Delta-G solvation = -28897.066717 eV Core-core repulsion = 24373.563237 eV Total energy + Delta-G solvation = -4523.503480 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.084 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -50.05040 -48.04813 -40.36329 -39.74315 -38.45175 -37.07361 -36.04408 -34.11521 -33.48928 -32.27871 -30.94058 -29.97433 -27.53147 -26.71871 -24.17517 -23.38289 -22.95884 -21.60846 -20.24073 -19.45299 -18.93531 -18.58294 -18.43676 -18.25937 -18.16155 -17.04401 -16.87674 -16.28309 -15.93088 -15.80216 -15.77079 -15.13744 -15.03283 -14.99593 -14.68446 -14.51634 -14.42358 -14.20290 -14.06262 -13.64477 -13.60918 -13.45141 -13.36282 -13.26699 -13.16504 -12.79304 -12.53352 -12.51394 -12.38297 -12.29106 -12.16899 -11.87533 -11.79297 -11.21796 -10.70768 -10.57526 -10.20134 -10.09559 -9.89619 -8.21451 -6.34890 -0.84849 -0.49083 0.13166 1.43772 1.48012 1.56102 1.79166 2.24813 2.41937 2.57951 2.66425 3.03084 3.07589 3.16917 3.42039 3.72994 3.75358 3.85378 3.97709 4.12876 4.15505 4.23746 4.36058 4.42106 4.44888 4.59874 4.72430 4.77340 4.81725 4.87854 4.95418 5.05285 5.20164 5.25208 5.40314 5.54075 5.59469 5.60118 5.82649 6.12739 6.70026 7.36045 7.49666 8.84534 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.012893 B = 0.003561 C = 0.003064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2171.258377 B = 7860.409345 C = 9136.019232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.038 3.962 3 Si 0.956 3.044 4 H -0.275 1.275 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.562 4.562 8 H 0.059 0.941 9 C 0.236 3.764 10 O -0.590 6.590 11 C -0.127 4.127 12 C 0.124 3.876 13 N -1.005 6.005 14 S 2.721 3.279 15 O -0.980 6.980 16 O -0.970 6.970 17 C -0.665 4.665 18 C -0.033 4.033 19 C -0.097 4.097 20 C -0.126 4.126 21 C 0.310 3.690 22 F -0.207 7.207 23 F -0.210 7.210 24 C -0.114 4.114 25 C -0.036 4.036 26 C 0.138 3.862 27 H 0.270 0.730 28 H 0.379 0.621 29 H 0.070 0.930 30 H 0.060 0.940 31 H 0.078 0.922 32 H 0.070 0.930 33 H 0.162 0.838 34 H 0.186 0.814 35 H 0.173 0.827 36 H 0.145 0.855 37 H 0.143 0.857 38 H 0.065 0.935 39 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.119 -14.990 2.566 16.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.164 4.164 3 Si 0.782 3.218 4 H -0.201 1.201 5 H -0.209 1.209 6 H -0.199 1.199 7 C -0.600 4.600 8 H 0.077 0.923 9 C 0.195 3.805 10 O -0.399 6.399 11 C -0.167 4.167 12 C -0.001 4.001 13 N -0.843 5.843 14 S 2.814 3.186 15 O -0.971 6.971 16 O -0.961 6.961 17 C -0.754 4.754 18 C -0.052 4.052 19 C -0.115 4.115 20 C -0.128 4.128 21 C 0.257 3.743 22 F -0.188 7.188 23 F -0.191 7.191 24 C -0.133 4.133 25 C -0.055 4.055 26 C 0.013 3.987 27 H 0.080 0.920 28 H 0.229 0.771 29 H 0.088 0.912 30 H 0.079 0.921 31 H 0.096 0.904 32 H 0.089 0.911 33 H 0.180 0.820 34 H 0.203 0.797 35 H 0.190 0.810 36 H 0.163 0.837 37 H 0.161 0.839 38 H 0.084 0.916 39 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -5.351 -16.015 2.124 17.018 hybrid contribution 0.000 1.797 0.759 1.950 sum -5.350 -14.219 2.883 15.463 Atomic orbital electron populations 1.69701 1.06681 1.28273 1.50104 1.25570 0.95717 1.01887 0.93182 0.85577 0.78736 0.79405 0.78069 1.20102 1.20940 1.19858 1.21781 0.94148 0.91766 1.52309 0.92260 1.19786 0.86420 0.90745 0.83554 1.86066 1.51177 1.50247 1.52458 1.22976 1.01685 0.92533 0.99498 1.21856 0.89321 0.94229 0.94686 1.58378 1.44034 1.21796 1.60117 1.00867 0.73166 0.70862 0.73681 1.93531 1.33062 1.85577 1.84888 1.93527 1.80360 1.76304 1.45866 1.31092 1.11107 1.16715 1.16443 1.21266 0.90799 0.91766 1.01358 1.21510 1.01888 0.98014 0.90139 1.21028 0.95636 0.99845 0.96247 1.20942 0.97656 0.74616 0.81105 1.93008 1.84257 1.54669 1.86876 1.93024 1.96635 1.62955 1.66484 1.21318 0.94334 0.97681 0.99962 1.21051 1.00081 0.93451 0.90935 1.22033 0.94047 0.86863 0.95716 0.92024 0.77123 0.91168 0.92086 0.90365 0.91133 0.82040 0.79679 0.81002 0.83685 0.83930 0.91608 0.90286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -45.32 10.77 21.45 0.23 -45.09 16 2 C 0.04 1.87 5.26 84.65 0.45 2.31 16 3 Si 0.96 40.12 29.54 68.60 2.03 42.14 16 4 H -0.28 -11.33 7.11 99.48 0.71 -10.63 16 5 H -0.28 -11.77 7.11 99.48 0.71 -11.07 16 6 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 7 C -0.56 -28.24 8.26 25.60 0.21 -28.03 16 8 H 0.06 2.98 7.79 -2.91 -0.02 2.95 16 9 C 0.24 10.83 0.89 -10.15 -0.01 10.82 16 10 O -0.59 -28.47 13.19 -148.98 -1.96 -30.44 16 11 C -0.13 -5.26 5.50 31.79 0.17 -5.09 16 12 C 0.12 4.26 6.99 86.73 0.61 4.87 16 13 N -1.00 -35.85 3.70 -506.41 -1.87 -37.72 16 14 S 2.72 89.23 5.94 -56.49 -0.34 88.89 16 15 O -0.98 -36.43 16.87 -128.00 -2.16 -38.59 16 16 O -0.97 -33.07 16.86 -128.00 -2.16 -35.23 16 17 C -0.67 -19.06 5.97 22.27 0.13 -18.93 16 18 C -0.03 -0.76 9.52 22.27 0.21 -0.54 16 19 C -0.10 -1.71 9.67 22.27 0.22 -1.49 16 20 C -0.13 -2.54 5.37 -19.86 -0.11 -2.65 16 21 C 0.31 4.80 5.45 71.24 0.39 5.18 16 22 F -0.21 -3.90 17.26 44.97 0.78 -3.13 16 23 F -0.21 -4.42 17.26 44.97 0.78 -3.64 16 24 C -0.11 -2.79 9.60 22.27 0.21 -2.58 16 25 C -0.04 -1.01 9.52 22.27 0.21 -0.80 16 26 C 0.14 5.63 6.15 86.85 0.53 6.16 16 27 H 0.27 12.91 8.31 -92.70 -0.77 12.14 16 28 H 0.38 18.85 7.18 -74.06 -0.53 18.32 16 29 H 0.07 3.06 7.71 -2.38 -0.02 3.04 16 30 H 0.06 2.56 8.03 -2.39 -0.02 2.54 16 31 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 32 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 33 H 0.16 3.14 7.62 -2.91 -0.02 3.11 16 34 H 0.19 1.44 7.95 -2.91 -0.02 1.41 16 35 H 0.17 0.98 7.88 -2.39 -0.02 0.96 16 36 H 0.15 3.13 8.06 -2.91 -0.02 3.11 16 37 H 0.14 3.92 7.62 -2.91 -0.02 3.90 16 38 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 39 H 0.08 3.13 8.03 -2.38 -0.02 3.11 16 Total: -1.00 -63.42 351.47 -0.88 -64.30 By element: Atomic # 1 Polarization: 28.70 SS G_CDS: 0.57 Total: 29.27 kcal Atomic # 6 Polarization: -33.99 SS G_CDS: 3.23 Total: -30.76 kcal Atomic # 7 Polarization: -81.18 SS G_CDS: -1.64 Total: -82.82 kcal Atomic # 8 Polarization: -97.98 SS G_CDS: -6.28 Total: -104.26 kcal Atomic # 9 Polarization: -8.32 SS G_CDS: 1.55 Total: -6.77 kcal Atomic # 14 Polarization: 40.12 SS G_CDS: 2.03 Total: 42.14 kcal Atomic # 16 Polarization: 89.23 SS G_CDS: -0.34 Total: 88.89 kcal Total: -63.42 -0.88 -64.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592077438.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -148.349 kcal (2) G-P(sol) polarization free energy of solvation -63.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -211.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -212.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds